Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G150000 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 1.0e-195 686.4 322 100.0
VMungo1215G3242 Vigna mungo HOM05D005241 ORTHO05D005862 4.5e-183 644.4 314 95.5
Glyma.17G067600 Glycine max HOM05D005241 ORTHO05D005862 1.7e-182 642.5 322 92.9
Glyma.13G092900 Glycine max HOM05D005241 ORTHO05D005862 3.4e-170 601.7 322 89.1
Medtr4g129180 Medicago truncatula HOM05D005241 ORTHO05D005862 2.4e-168 595.5 322 85.7
Psat4g010840 Pisum sativum HOM05D005241 ORTHO05D005862 2.7e-167 592.0 322 85.1
Ca_21190_v3 Cicer arietinum L. HOM05D005241 ORTHO05D005862 6.6e-166 587.4 319 85.0
Lj4g0014860 Lotus japonicus HOM05D005241 ORTHO05D005862 1.1e-165 586.6 314 86.9
Lalb_Chr07g0180171 Lupinus albus HOM05D005241 ORTHO05D005862 4.0e-163 578.2 316 83.9
Manes.06G028800 Manihot esculenta HOM05D005241 ORTHO05D005862 6.0e-159 564.3 322 80.4
CiPaw.07G187700 Carya illinoinensis HOM05D005241 ORTHO05D005862 1.1e-157 560.1 316 81.6
Ciclev10008429m.g Citrus clementina HOM05D005241 ORTHO05D005862 1.9e-157 559.3 322 80.7
Duzib150G1634 Durio zibethinus HOM05D005241 ORTHO05D005862 1.9e-157 559.3 322 79.8
Glyma.13G092800 Glycine max HOM05D005241 ORTHO05D005862 2.5e-157 558.9 314 81.2
Medtr4g129200 Medicago truncatula HOM05D005241 ORTHO05D005862 7.3e-157 557.4 315 81.6
Lalb_Chr07g0180161 Lupinus albus HOM05D005241 ORTHO05D005862 1.2e-156 556.6 318 80.5
Actinidia24021 Actinidia chinensis HOM05D005241 ORTHO05D005862 3.6e-156 555.1 318 80.5
TPR.G5349 Trifolium pratense HOM05D005241 ORTHO05D005862 6.2e-156 554.3 314 80.3
COL.COLO4_16078 Corchorus olitorius HOM05D005241 ORTHO05D005862 1.1e-155 553.5 314 81.2
MD13G1261500 Malus domestica HOM05D005241 ORTHO05D005862 1.1e-155 553.5 320 79.7
FvH4_4g09810 Fragaria vesca HOM05D005241 ORTHO05D005862 1.8e-155 552.7 322 79.8
FAN12G0682 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.8e-155 552.7 322 79.8
Dinv41292 Davidia involucrata HOM05D005241 ORTHO05D005862 3.1e-155 552.0 318 79.6
RcHm_v2.0_Chr4g0404611 Rosa chinensis HOM05D005241 ORTHO05D005862 3.1e-155 552.0 322 79.8
Thecc.09G163500 Theobroma cacao HOM05D005241 ORTHO05D005862 3.1e-155 552.0 321 78.8
Atru.chr7.554 Acer truncatum HOM05D005241 ORTHO05D005862 4.0e-155 551.6 321 78.5
Potri.018G097100 Populus trichocarpa HOM05D005241 ORTHO05D005862 1.2e-154 550.1 322 78.9
CSS0029475 Camellia sinensis var. sinensis HOM05D005241 ORTHO05D005862 1.5e-154 549.7 310 82.3
Gohir.A06G047300 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.5e-154 549.7 322 78.0
Gohir.D06G047501 Gossypium hirsutum HOM05D005241 ORTHO05D005862 2.6e-154 548.9 322 78.3
FAN07G2217 Fragaria x ananassa HOM05D005241 ORTHO05D005862 4.4e-154 548.1 322 79.2
FAN17G0752 Fragaria x ananassa HOM05D005241 ORTHO05D005862 9.9e-154 547.0 322 78.9
THA.LOC104813533 Tarenaya hassleriana HOM05D005241 ORTHO05D005862 9.9e-154 547.0 319 78.1
Gorai.010G053100 Gossypium raimondii HOM05D005241 ORTHO05D005862 1.7e-153 546.2 323 78.3
arahy.Tifrunner.gnm1.ann1.RWXM46 Arachis hypogaea HOM05D005241 ORTHO05D005862 2.9e-153 545.4 314 79.0
Haze_22151 Corylus avellana HOM05D005241 ORTHO05D005862 2.9e-153 545.4 314 80.3
HanXRQChr06g0178861 Helianthus annuus HOM05D005241 ORTHO05D005862 1.1e-152 543.5 318 79.2
COL.COLO4_16080 Corchorus olitorius HOM05D005241 ORTHO05D005862 2.4e-152 542.3 320 77.2
Phvul.003G150200 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 4.2e-152 541.6 313 78.9
vmacro13085 Vaccinium macrocarpon HOM05D005241 ORTHO05D005862 4.2e-152 541.6 319 76.8
Psat4g010800 Pisum sativum HOM05D005241 ORTHO05D005862 7.1e-152 540.8 309 79.6
TAR629G1464 Trochodendron aralioides HOM05D005241 ORTHO05D005862 7.1e-152 540.8 316 78.2
Dinv42767 Davidia involucrata HOM05D005241 ORTHO05D005862 9.3e-152 540.4 320 79.4
Dinv43336 Davidia involucrata HOM05D005241 ORTHO05D005862 9.3e-152 540.4 320 79.4
Oeu043521.1 Olea europaea HOM05D005241 ORTHO05D005862 9.3e-152 540.4 322 77.0
QL02p096102 Quercus lobata HOM05D005241 ORTHO05D005862 9.3e-152 540.4 314 79.3
Thecc.09G163700 Theobroma cacao HOM05D005241 ORTHO05D005862 1.2e-151 540.0 317 77.3
unitig_0.g567 Utricularia gibba HOM05D005241 ORTHO05D005862 1.6e-151 539.7 313 77.6
Sopen12g007320 Solanum pennellii HOM05D005241 ORTHO05D005862 2.1e-151 539.3 313 79.2
Solyc12g014440.2 Solanum lycopersicum HOM05D005241 ORTHO05D005862 4.6e-151 538.1 313 79.6
Sabra18G0084300 Salix brachista HOM05D005241 ORTHO05D005862 6.0e-151 537.7 316 77.8
TWI34G1734 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 7.8e-151 537.3 319 78.1
CsaV3_1G029530 Cucumis sativus L. HOM05D005241 ORTHO05D005862 1.3e-150 536.6 319 76.2
SGA_v2.0_scaffold66G22503 Striga asiatica HOM05D005241 ORTHO05D005862 1.3e-150 536.6 314 77.7
arahy.Tifrunner.gnm1.ann1.4YP8RP Arachis hypogaea HOM05D005241 ORTHO05D005862 1.7e-150 536.2 308 78.9
SalBow6G2881 Salvia bowleyana HOM05D005241 ORTHO05D005862 2.3e-150 535.8 312 77.9
TWI34G0564 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 2.3e-150 535.8 319 78.1
Lsat_1_v5_gn_8_65460 Lactuca sativa HOM05D005241 ORTHO05D005862 3.9e-150 535.0 311 78.8
MSTRG.19688 Avicennia marina HOM05D005241 ORTHO05D005862 1.9e-149 532.7 313 77.6
PGR102G1178 Punica granatum HOM05D005241 ORTHO05D005862 2.5e-149 532.3 317 74.8
Gohir.A05G345818 Gossypium hirsutum HOM05D005241 ORTHO05D005862 4.3e-149 531.6 322 75.2
BolC3t13925H Brassica oleracea HOM05D005241 ORTHO05D005862 5.6e-149 531.2 309 78.6
MBI18_g28946_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 5.6e-149 531.2 311 77.2
Lj9A730T54 Lonicera japonica HOM05D005241 ORTHO05D005862 7.3e-149 530.8 314 77.4
Rhsim01G0009500 Rhododendron simsii HOM05D005241 ORTHO05D005862 7.3e-149 530.8 314 77.7
A03p12620 Brassica napus HOM05D005241 ORTHO05D005862 1.3e-148 530.0 309 78.3
CARHR271450 Cardamine hirsuta HOM05D005241 ORTHO05D005862 1.6e-148 529.6 307 78.2
CANSAT11G2449 Cannabis sativa HOM05D005241 ORTHO05D005862 3.6e-148 528.5 319 76.2
Sp6g19390 Schrenkiella parvula HOM05D005241 ORTHO05D005862 3.6e-148 528.5 309 77.7
BraA03t10577Z Brassica rapa HOM05D005241 ORTHO05D005862 4.8e-148 528.1 309 78.3
Lj4g0023001 Lotus japonicus HOM05D005241 ORTHO05D005862 6.2e-148 527.7 325 76.0
AL8G33730 Arabidopsis lyrata HOM05D005241 ORTHO05D005862 1.4e-147 526.6 307 78.2
DCAR_014714 Daucus carota HOM05D005241 ORTHO05D005862 2.4e-147 525.8 309 77.7
Nn7g37052 Nelumbo nucifera HOM05D005241 ORTHO05D005862 2.4e-147 525.8 313 76.4
Thhalv10013983m.g Eutrema salsugineum HOM05D005241 ORTHO05D005862 3.1e-147 525.4 309 78.0
SalBow6G2671 Salvia bowleyana HOM05D005241 ORTHO05D005862 4.0e-147 525.0 305 78.4
ClCG06G012960 Citrullus lanatus HOM05D005241 ORTHO05D005862 5.3e-147 524.6 319 75.2
CDE10G0441 Ceratophyllum demersum HOM05D005241 ORTHO05D005862 9.0e-147 523.9 316 74.7
C03p14830 Brassica napus HOM05D005241 ORTHO05D005862 1.5e-146 523.1 309 77.7
ATR0796G313 Amborella trichopoda HOM05D005241 ORTHO05D005862 2.6e-146 522.3 310 76.1
Gorai.012G095700 Gossypium raimondii HOM05D005241 ORTHO05D005862 3.4e-146 521.9 316 75.9
ECA236G3445 Erigeron canadensis HOM05D005241 ORTHO05D005862 5.8e-146 521.2 308 77.6
Gohir.D04G085700 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.7e-145 519.6 316 75.3
PSO135G0092 Papaver somniferum HOM05D005241 ORTHO05D005862 4.9e-145 518.1 308 76.0
AT5G57700 Arabidopsis thaliana HOM05D005241 ORTHO05D005862 6.4e-145 517.7 307 76.5
Os07g0516000 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 8.4e-145 517.3 311 76.2
Cc06_g13790 Coffea canephora HOM05D005241 ORTHO05D005862 1.1e-144 516.9 306 78.4
Hund09015 Selenicereus undatus HOM05D005241 ORTHO05D005862 1.1e-144 516.9 310 75.5
PSO384G1775 Papaver somniferum HOM05D005241 ORTHO05D005862 1.9e-144 516.2 308 76.0
Aqoxy4G03021 Aquilegia oxysepala HOM05D005241 ORTHO05D005862 2.4e-144 515.8 309 76.7
Eucgr.C02440 Eucalyptus grandis HOM05D005241 ORTHO05D005862 1.6e-143 513.1 318 71.4
Aa31LG3G13540 Aethionema arabicum HOM05D005241 ORTHO05D005862 2.1e-143 512.7 309 75.1
PSO135G0726 Papaver somniferum HOM05D005241 ORTHO05D005862 4.6e-143 511.5 308 74.7
HPP92_013485 Vanilla planifolia HOM05D005241 ORTHO05D005862 1.0e-142 510.4 311 75.2
PSO135G0552 Papaver somniferum HOM05D005241 ORTHO05D005862 5.1e-142 508.1 308 75.0
PSO384G2580 Papaver somniferum HOM05D005241 ORTHO05D005862 2.4e-139 499.2 308 73.7
AUR62040288 Chenopodium quinoa HOM05D005241 ORTHO05D005862 5.8e-138 494.6 304 74.7
SEGI_10163 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 3.2e-136 488.8 309 71.8
Peaxi162Scf00078g00547 Petunia axillaris HOM05D005241 ORTHO05D005862 3.0e-134 482.3 305 75.4
EL10Ac8g18255 Beta vulgaris HOM05D005241 ORTHO05D005862 1.5e-133 479.9 304 72.0
Os07g0516050 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 4.3e-133 478.4 311 66.9
SMO351G0057 Selaginella moellendorffii HOM05D005241 ORTHO05D005862 1.4e-128 463.4 306 66.3
Nitab4.5_0000168g0090 Nicotiana tabacum HOM05D005241 ORTHO05D005862 2.5e-128 462.6 313 71.2
Nitab4.5_0006743g0030 Nicotiana tabacum HOM05D005241 ORTHO05D005862 6.0e-127 458.0 313 71.6
HPP92_026039 Vanilla planifolia HOM05D005241 ORTHO05D005862 2.3e-126 456.1 311 69.1
Mapoly0080s0044 Marchantia polymorpha HOM05D005241 ORTHO05D005862 4.1e-123 445.3 312 63.1
Peaxi162Scf00339g00098 Petunia axillaris HOM05D005241 ORTHO05D005862 4.1e-123 445.3 305 70.8
PGSC0003DMG400012851 Solanum tuberosum HOM05D005241 ORTHO05D005862 3.8e-121 438.7 305 69.8
Sc08g0005390 Simmondsia chinensis HOM05D005241 ORTHO05D005862 3.2e-120 435.6 309 67.0
AUR62039979 Chenopodium quinoa HOM05D005241 ORTHO05D005862 1.2e-119 433.7 316 61.7
Hma1.2p1_0921F.1_g236680 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 1.6e-119 433.3 339 63.7
Hma1.2p1_2604F.1_g325280 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 1.6e-119 433.3 339 63.7
Zm00001eb105960 Zea mays HOM05D005241 ORTHO05D005862 1.6e-119 433.3 276 71.0
Pp3c3_37310 Physcomitrium patens HOM05D005241 ORTHO05D005862 3.5e-119 432.2 304 62.8
Zm00001eb105910 Zea mays HOM05D005241 ORTHO05D005862 4.6e-119 431.8 286 67.8
FAN22G1361 Fragaria x ananassa HOM05D005241 ORTHO05D005862 3.9e-118 428.7 451 51.9
EL10Ac8g18254 Beta vulgaris HOM05D005241 ORTHO05D005862 1.5e-117 426.8 311 60.8
Sed0027242 Sechium edule HOM05D005241 ORTHO05D005862 4.1e-115 418.7 241 77.6
Hund26388 Selenicereus undatus HOM05D005241 ORTHO05D005862 2.0e-114 416.4 313 61.7
Migut.J01437 Erythranthe guttata HOM05D005241 ORTHO05D005862 3.5e-98 362.5 212 77.4
Carub.0008s1821 Capsella rubella HOM05D005241 ORTHO05D005862 8.0e-95 351.3 198 81.8
TPR.G40451 Trifolium pratense HOM05D005241 ORTHO05D005862 1.8e-94 350.1 176 90.3
Cpa.g.sc450.6 Carica papaya HOM05D005241 ORTHO05D005862 4.0e-94 349.0 211 77.3
MELO3C029512.2 Cucumis melo HOM05D005241 ORTHO05D005862 1.8e-91 340.1 251 66.1
TPR.G5299 Trifolium pratense HOM05D005241 ORTHO05D005862 1.8e-91 340.1 186 84.9
SEGI_04095 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 2.9e-89 332.8 214 70.6
Prupe.1G095300 Prunus persica HOM05D005241 ORTHO05D005862 1.2e-85 320.9 175 83.4
EL10Ac9g22414 Beta vulgaris HOM05D005241 ORTHO05D005862 7.0e-83 311.6 304 49.7
Nitab4.5_0000692g0020 Nicotiana tabacum HOM05D005241 ORTHO05D005862 5.4e-67 258.8 305 48.5
EL10Ac7g17876 Beta vulgaris HOM05D005241 ORTHO05D005862 3.1e-46 189.9 208 46.2
MELO3C017513.2 Cucumis melo HOM05D005241 ORTHO05D005862 8.4e-44 181.8 107 71.0
MBI18_g46216_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 8.1e-39 165.2 99 76.8
Glyma.17G067650 Glycine max HOM05D005241 ORTHO05D005862 1.5e-37 161.0 87 78.2
Hund09002 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.2e-34 151.4 96 70.8
FAN12G2859 Fragaria x ananassa HOM05D005241 ORTHO05D005862 2.6e-29 133.7 73 83.6
Nn8g41235 Nelumbo nucifera HOM05D005241 ORTHO05D005862 4.5e-29 132.9 78 73.1
MBI18_g29570_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 3.2e-27 126.7 91 63.7
Sc08g0005370 Simmondsia chinensis HOM05D005241 ORTHO05D005862 7.1e-27 125.6 79 75.9
SHI03002 Sapria himalayana HOM05D005241 ORTHO05D005862 6.7e-25 119.0 318 28.3
AagrBONN_evm.TU.Sc2ySwM_228.5641 Anthoceros agrestis HOM05D005241 ORTHO05D005862 7.4e-24 115.5 311 28.0
Peaxi162Scf00014g00192 Petunia axillaris HOM05D005241 ORTHO05D005862 5.1e-17 92.8 90 60.0
CBR_g30241 Chara braunii HOM05D005241 ORTHO05D005862 1.2e-13 81.6 295 26.4
CBR_g30152 Chara braunii HOM05D010403 ORTHO05D005862 1.4e-11 74.7 159 30.8
MBI18_g11928_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 4.6e-10 69.7 49 69.4
MBI19_g36862_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.0e-09 68.6 49 59.2
Peaxi162Scf00013g00004 Petunia axillaris HOM05D000090 ORTHO05D001322 8.7e-09 65.5 41 65.9
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 1.8e-06 57.8 40 72.5


User provided reference genes

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