Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G148000 Phaseolus vulgaris HOM05D000306 ORTHO05D007657 0.0e+00 1116.3 578 100.0
VMungo1215G2115 Vigna mungo HOM05D000306 ORTHO05D007657 1.1e-307 1059.3 578 91.0
Glyma.17G065600 Glycine max HOM05D000306 ORTHO05D007657 1.0e-302 1042.7 577 92.5
Lj4g0000904 Lotus japonicus HOM05D000306 ORTHO05D007657 3.1e-291 1004.6 580 88.8
Lalb_Chr07g0180291 Lupinus albus HOM05D000306 ORTHO05D007657 1.3e-289 999.2 579 87.9
Ca_21206_v3 Cicer arietinum L. HOM05D000306 ORTHO05D007657 2.2e-289 998.4 576 88.9
arahy.Tifrunner.gnm1.ann1.2QW3Q9 Arachis hypogaea HOM05D000306 ORTHO05D007657 1.6e-287 992.3 588 82.7
Medtr4g128640 Medicago truncatula HOM05D000306 ORTHO05D007657 7.9e-287 989.9 576 88.0
Glyma.13G094600 Glycine max HOM05D000306 ORTHO05D007657 3.3e-277 958.0 540 91.3
CiPaw.07G190000 Carya illinoinensis HOM05D000306 ORTHO05D007657 1.6e-274 949.1 581 79.7
PGR142G2969 Punica granatum HOM05D000306 ORTHO05D007657 8.0e-271 936.8 571 80.4
CANSAT11G0744 Cannabis sativa HOM05D000306 ORTHO05D007657 1.0e-270 936.4 580 82.1
QL02p097271 Quercus lobata HOM05D000306 ORTHO05D007657 1.0e-270 936.4 585 78.3
GSVIVG01029150001 Vitis vinifera HOM05D000306 ORTHO05D007657 1.1e-269 932.9 582 77.7
Manes.06G026700 Manihot esculenta HOM05D000306 ORTHO05D007657 1.5e-269 932.6 580 78.3
Potri.018G095700 Populus trichocarpa HOM05D000306 ORTHO05D007657 4.4e-269 931.0 580 77.6
Hma1.2p1_3301F.1_g335020 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 2.8e-268 928.3 570 79.3
TWI34G1080 Tripterygium wilfordii HOM05D000306 ORTHO05D007657 2.8e-268 928.3 569 82.4
Ciclev10007754m.g Citrus clementina HOM05D000306 ORTHO05D007657 1.8e-267 925.6 580 80.9
FvH4_4g09080 Fragaria vesca HOM05D000306 ORTHO05D007657 5.3e-267 924.1 580 78.3
Prupe.1G089400 Prunus persica HOM05D000306 ORTHO05D007657 7.0e-267 923.7 577 78.0
THA.LOC104803506 Tarenaya hassleriana HOM05D000306 ORTHO05D007657 7.0e-267 923.7 569 78.6
CsaV3_2G008000 Cucumis sativus L. HOM05D000306 ORTHO05D007657 2.0e-266 922.2 580 77.6
Sabra18G0081600 Salix brachista HOM05D000306 ORTHO05D007657 2.0e-266 922.2 607 74.5
RcHm_v2.0_Chr4g0403081 Rosa chinensis HOM05D000306 ORTHO05D007657 3.5e-266 921.4 579 82.2
Carub.0007s1029 Capsella rubella HOM05D000306 ORTHO05D007657 7.7e-266 920.2 569 77.2
Cpa.g.sc95.65 Carica papaya HOM05D000306 ORTHO05D007657 7.7e-266 920.2 571 78.6
Gorai.009G006500 Gossypium raimondii HOM05D000306 ORTHO05D007657 1.3e-265 919.5 577 78.0
PSO063G6265 Papaver somniferum HOM05D000306 ORTHO05D007657 1.5e-264 916.0 571 77.1
Eucgr.C00188 Eucalyptus grandis HOM05D000306 ORTHO05D007657 1.9e-264 915.6 578 77.3
Thhalv10024769m.g Eutrema salsugineum HOM05D000306 ORTHO05D007657 1.9e-264 915.6 571 77.2
PSO782G2546 Papaver somniferum HOM05D000306 ORTHO05D007657 2.5e-264 915.2 571 76.9
Sp7g28180 Schrenkiella parvula HOM05D000306 ORTHO05D007657 5.5e-264 914.1 571 77.1
AL7G21840 Arabidopsis lyrata HOM05D000306 ORTHO05D007657 7.2e-264 913.7 571 76.7
Dinv42746 Davidia involucrata HOM05D000306 ORTHO05D007657 9.4e-264 913.3 571 78.3
Dinv43355 Davidia involucrata HOM05D000306 ORTHO05D007657 9.4e-264 913.3 571 78.3
Actinidia17107 Actinidia chinensis HOM05D000306 ORTHO05D007657 2.7e-263 911.8 580 77.2
Gohir.D05G006400 Gossypium hirsutum HOM05D000306 ORTHO05D007657 6.1e-263 910.6 577 77.8
ClCG11G012530 Citrullus lanatus HOM05D000306 ORTHO05D007657 1.4e-262 909.4 616 73.5
Sed0007717 Sechium edule HOM05D000306 ORTHO05D007657 1.2e-261 906.4 567 77.8
MD13G1267100 Malus domestica HOM05D000306 ORTHO05D007657 9.8e-261 903.3 574 77.9
Nn2g12665 Nelumbo nucifera HOM05D000306 ORTHO05D007657 9.8e-261 903.3 570 76.3
FAN22G1929 Fragaria x ananassa HOM05D000306 ORTHO05D007657 3.7e-260 901.4 603 74.5
Oeu042129.1 Olea europaea HOM05D000306 ORTHO05D007657 3.7e-260 901.4 569 76.6
CSS0004024 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D007657 6.3e-260 900.6 568 77.1
Aqoxy7G03118 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 1.4e-259 899.4 568 76.6
BraA03t15029Z Brassica rapa HOM05D000306 ORTHO05D007657 4.1e-259 897.9 583 75.8
BolC7t46241H Brassica oleracea HOM05D000306 ORTHO05D007657 5.4e-259 897.5 583 75.8
A03p59750 Brassica napus HOM05D000306 ORTHO05D007657 7.0e-259 897.1 583 75.6
C07p57810 Brassica napus HOM05D000306 ORTHO05D007657 7.0e-259 897.1 583 75.8
CAN.G584.11 Capsicum annuum HOM05D000306 ORTHO05D007657 1.0e-257 893.3 579 74.6
Migut.J01462 Erythranthe guttata HOM05D000306 ORTHO05D007657 2.2e-257 892.1 581 75.0
Solyc07g006780.3 Solanum lycopersicum HOM05D000306 ORTHO05D007657 6.5e-257 890.6 579 74.4
Nitab4.5_0000937g0030 Nicotiana tabacum HOM05D000306 ORTHO05D007657 1.5e-256 889.4 570 74.9
FAN12G4153 Fragaria x ananassa HOM05D000306 ORTHO05D007657 1.9e-256 889.0 645 70.5
HanXRQChr03g0068931 Helianthus annuus HOM05D000306 ORTHO05D007657 1.9e-256 889.0 570 75.3
Sopen07g002880 Solanum pennellii HOM05D000306 ORTHO05D007657 3.2e-256 888.3 579 74.3
ECA240G1428 Erigeron canadensis HOM05D000306 ORTHO05D005993 5.5e-256 887.5 578 74.4
PGSC0003DMG400018753 Solanum tuberosum HOM05D000306 ORTHO05D007657 1.2e-255 886.3 568 75.4
Zm00001eb069070 Zea mays HOM05D000306 ORTHO05D007657 6.1e-255 884.0 568 75.9
Haze_22120 Corylus avellana HOM05D000306 ORTHO05D007657 1.4e-254 882.9 599 74.6
Lsat_1_v5_gn_7_54281 Lactuca sativa HOM05D000306 ORTHO05D007657 2.0e-253 879.0 579 74.3
ATR0580G308 Amborella trichopoda HOM05D000306 ORTHO05D007657 5.7e-253 877.5 586 72.9
HPP92_013461 Vanilla planifolia HOM05D000306 ORTHO05D007657 1.7e-252 875.9 580 72.8
BcaNung00538 Brassica carinata HOM05D000306 ORTHO05D007657 2.2e-252 875.5 572 75.3
EL10Ac8g18267 Beta vulgaris HOM05D000306 ORTHO05D007657 5.4e-251 870.9 578 73.7
Cc06_g13490 Coffea canephora HOM05D000306 ORTHO05D007657 1.6e-250 869.4 574 74.4
Sc14g0001220 Simmondsia chinensis HOM05D000306 ORTHO05D007657 2.3e-249 865.5 530 79.6
vmacro13107 Vaccinium macrocarpon HOM05D000306 ORTHO05D007657 2.3e-249 865.5 692 65.5
Peaxi162Scf00050g00633 Petunia axillaris HOM05D000306 ORTHO05D007657 2.9e-249 865.1 566 74.0
Gohir.A05G005700 Gossypium hirsutum HOM05D000306 ORTHO05D007657 3.3e-248 861.7 537 78.2
Hund00645 Selenicereus undatus HOM05D000306 ORTHO05D007657 9.5e-248 860.1 667 65.4
Rhsim01G0007000 Rhododendron simsii HOM05D000306 ORTHO05D007657 4.7e-247 857.8 613 71.0
Aa31LG2G20220 Aethionema arabicum HOM05D000306 ORTHO05D007657 1.2e-245 853.2 531 79.8
Nitab4.5_0000244g0290 Nicotiana tabacum HOM05D000306 ORTHO05D007657 1.5e-245 852.8 583 71.7
TPR.G5313 Trifolium pratense HOM05D000306 ORTHO05D007657 5.7e-245 850.9 485 88.2
AUR62040301 Chenopodium quinoa HOM05D000306 ORTHO05D007657 1.1e-243 846.7 593 71.2
AUR62039995 Chenopodium quinoa HOM05D000306 ORTHO05D007657 7.0e-243 844.0 604 69.4
Cfa013520 Carpinus fangiana HOM05D000306 ORTHO05D007657 2.0e-242 842.4 589 72.7
FAN17G2452 Fragaria x ananassa HOM05D000306 ORTHO05D007657 5.9e-242 840.9 591 71.6
MBI16_g41815_MAGBIO Magnolia biondii HOM05D000306 ORTHO05D007657 3.0e-241 838.6 579 71.8
CDE04G1293 Ceratophyllum demersum HOM05D000306 ORTHO05D007657 6.6e-241 837.4 568 71.7
Hma1.2p1_1423F.1_g282590 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 1.9e-240 835.9 575 72.9
Duzib150G0020 Durio zibethinus HOM05D000306 ORTHO05D007657 5.6e-240 834.3 580 72.1
Psat4g012000 Pisum sativum HOM05D000306 ORTHO05D007657 2.3e-233 812.4 469 86.1
Atru.chr7.723 Acer truncatum HOM05D000306 ORTHO05D007657 2.1e-231 805.8 499 80.2
Mapoly0003s0282 Marchantia polymorpha HOM05D000306 ORTHO05D007657 1.6e-226 789.6 587 62.9
ECA240G0310 Erigeron canadensis HOM05D000306 ORTHO05D007657 2.1e-226 789.3 619 64.8
Pp3c23_15560 Physcomitrium patens HOM05D000306 ORTHO05D007657 4.3e-224 781.6 571 65.5
TAR383G0632 Trochodendron aralioides HOM05D000306 ORTHO05D007657 1.3e-220 770.0 469 78.9
Thecc.09G168500 Theobroma cacao HOM05D000306 ORTHO05D007657 3.5e-218 761.9 462 79.4
AT4G30310 Arabidopsis thaliana HOM05D000306 ORTHO05D007657 1.9e-211 739.6 462 75.5
SGA_v2.0_scaffold69G23280 Striga asiatica HOM05D000306 ORTHO05D007657 2.9e-196 689.1 470 71.7
Lj9A688T83 Lonicera japonica HOM05D000306 ORTHO05D007657 1.9e-187 659.8 465 71.4
DCAR_020115 Daucus carota HOM05D000306 ORTHO05D007657 4.2e-187 658.7 440 74.1
Hund00646 Selenicereus undatus HOM05D000306 ORTHO05D007657 2.3e-177 626.3 598 57.5
Hma1.2p1_0342F.1_g130620 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 3.3e-176 622.5 606 58.7
AagrBONN_evm.TU.Sc2ySwM_117.626 Anthoceros agrestis HOM05D000306 ORTHO05D007657 9.7e-176 620.9 531 56.7
CARHR238220 Cardamine hirsuta HOM05D000306 ORTHO05D007657 6.3e-175 618.2 399 73.7
SMO239G0169 Selaginella moellendorffii HOM05D000306 ORTHO05D007657 9.7e-152 541.2 474 56.8
MELO3C004085.2 Cucumis melo HOM05D000306 ORTHO05D007657 1.3e-148 530.8 578 51.7
Os02g0177900 Oryza sativa ssp. japonica HOM05D000306 ORTHO05D007657 3.7e-143 512.7 353 70.5
RcHm_v2.0_Chr4g0405011 Rosa chinensis HOM05D000306 ORTHO05D007657 2.3e-140 503.4 358 69.8
Nn8g40502 Nelumbo nucifera HOM05D000306 ORTHO05D007657 5.0e-132 475.7 287 80.1
SEGI_13713 Sequoiadendron giganteum HOM05D000306 ORTHO05D007657 5.4e-126 455.7 310 69.4
Nn2g14416 Nelumbo nucifera HOM05D000306 ORTHO05D007657 9.2e-118 428.3 243 84.4
Haze_26997 Corylus avellana HOM05D000306 ORTHO05D007657 4.7e-114 416.0 559 41.7
Aqoxy3G01085 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 7.1e-110 402.1 265 73.6
CSS0008880 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D007657 8.4e-103 378.6 240 76.2
SHI02941 Sapria himalayana HOM05D000306 ORTHO05D007657 5.1e-100 369.4 241 73.0
Cfa026537 Carpinus fangiana HOM05D000306 ORTHO05D007657 6.6e-92 342.4 594 35.2
Aqoxy1G02891 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 8.4e-71 272.3 208 66.3
Aqoxy3G01524 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 2.6e-64 250.8 175 68.6
Lj9A687T77 Lonicera japonica HOM05D000306 ORTHO05D007657 2.3e-60 237.7 143 80.4
arahy.Tifrunner.gnm1.ann1.ID2I7H Arachis hypogaea HOM05D000306 ORTHO05D007657 2.9e-55 220.7 128 85.2
HanXRQChr09g0255811 Helianthus annuus HOM05D000306 ORTHO05D007657 5.9e-48 196.4 125 76.8
SEGI_25583 Sequoiadendron giganteum HOM05D000306 ORTHO05D007657 1.1e-46 192.2 134 68.7
Aqoxy1G03516 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 1.5e-43 181.8 189 56.1
MELO3C000682.2 Cucumis melo HOM05D000306 ORTHO05D007657 1.4e-41 175.3 87 88.5
Cre12.g543902 Chlamydomonas reinhardtii HOM05D000306 ORTHO05D007657 6.5e-39 166.4 525 27.4
Aqoxy3G01525 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 3.2e-38 164.1 88 83.0
MCO11G321 Micromonas commoda HOM05D002248 ORTHO05D006121 7.2e-38 162.9 559 25.8
MELO3C028573.2 Cucumis melo HOM05D000306 ORTHO05D007657 4.8e-34 150.2 105 66.7
Pp3s30_470 Physcomitrium patens HOM05D000306 ORTHO05D317356 1.0e-28 132.5 533 27.6
arahy.Tifrunner.gnm1.ann1.MK7H36 Arachis hypogaea HOM05D000306 ORTHO05D007657 4.1e-25 120.6 64 81.2
DCAR_020114 Daucus carota HOM05D000306 ORTHO05D007657 2.0e-24 118.2 82 73.2
SEGI_34135 Sequoiadendron giganteum HOM05D000306 ORTHO05D030075 1.1e-22 112.5 69 79.7
CAN.G790.37 Capsicum annuum HOM05D000306 ORTHO05D007657 4.5e-16 90.5 53 77.4
arahy.Tifrunner.gnm1.ann1.QZT5UT Arachis hypogaea HOM05D000200 ORTHO05D010534 1.7e-15 88.6 50 86.0
RcHm_v2.0_Chr4g0405021 Rosa chinensis HOM05D000306 ORTHO05D030075 8.6e-15 86.3 59 71.2
TPR.G18960 Trifolium pratense HOM05D000306 ORTHO05D007657 1.9e-14 85.1 52 84.6
MD07G1169000 Malus domestica HOM05D000306 ORTHO05D030075 9.5e-14 82.8 57 77.2
QL02p086401 Quercus lobata HOM05D000306 ORTHO05D007657 2.8e-13 81.3 49 75.5
QL02p097096 Quercus lobata HOM05D000306 ORTHO05D007657 8.9e-12 76.3 49 73.5
Pp3s42_220 Physcomitrium patens HOM05D003206 ORTHO05D310700 4.4e-11 73.9 157 30.6
Phvul.010G157400 Phaseolus vulgaris HOM05D003206 ORTHO05D005207 3.7e-10 70.9 570 22.1
SMO271G0060 Selaginella moellendorffii HOM05D003206 ORTHO05D005207 8.3e-10 69.7 534 21.2
Aqoxy7G03604 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 1.4e-09 68.9 537 21.6
TPR.G20440 Trifolium pratense HOM05D000306 ORTHO05D050985 2.4e-09 68.2 41 78.0
PSO017G7051 Papaver somniferum HOM05D003206 ORTHO05D005207 7.0e-09 66.6 542 21.0
DCAR_016275 Daucus carota HOM05D003206 ORTHO05D005207 1.2e-08 65.9 544 21.7
Glyma.07G028600 Glycine max HOM05D003206 ORTHO05D005207 1.6e-08 65.5 533 20.1
AagrBONN_evm.TU.Sc2ySwM_228.3101 Anthoceros agrestis HOM05D003206 ORTHO05D005207 2.7e-08 64.7 530 21.1
MELO3C023442.2 Cucumis melo HOM05D003206 ORTHO05D005207 2.7e-08 64.7 540 20.4
PSO170G1430 Papaver somniferum HOM05D003206 ORTHO05D005207 2.7e-08 64.7 542 20.8
ClCG09G003080 Citrullus lanatus HOM05D003206 ORTHO05D005207 3.5e-08 64.3 540 20.4
SEGI_29302 Sequoiadendron giganteum HOM05D000306 ORTHO05D050985 3.5e-08 64.3 41 70.7
Lalb_Chr04g0262301 Lupinus albus HOM05D003206 ORTHO05D005207 4.6e-08 63.9 526 20.9
Lsat_1_v5_gn_1_31380 Lactuca sativa HOM05D003206 ORTHO05D005207 1.0e-07 62.8 531 21.8
CANSAT56G2846 Cannabis sativa HOM05D003206 ORTHO05D005207 1.3e-07 62.4 544 21.3
Duzib160G0518 Durio zibethinus HOM05D003206 ORTHO05D005207 1.7e-07 62.0 535 20.0
SEGI_06294 Sequoiadendron giganteum HOM05D003206 ORTHO05D005207 1.7e-07 62.0 546 21.2
Hund06548 Selenicereus undatus HOM05D003206 ORTHO05D005207 2.3e-07 61.6 539 20.8
Psat7g257640 Pisum sativum HOM05D003206 ORTHO05D005207 3.0e-07 61.2 533 21.2
ATR0767G098 Amborella trichopoda HOM05D003206 ORTHO05D005207 3.9e-07 60.8 487 21.8
MSTRG.11155 Avicennia marina HOM05D003206 ORTHO05D005207 6.6e-07 60.1 534 20.6
CsaV3_7G032210 Cucumis sativus L. HOM05D003206 ORTHO05D005207 8.6e-07 59.7 538 19.9
Eucgr.F03908 Eucalyptus grandis HOM05D003206 ORTHO05D005207 8.6e-07 59.7 536 20.1
QL02p097186 Quercus lobata HOM05D000306 ORTHO05D030075 8.6e-07 59.7 42 66.7
Thecc.06G031800 Theobroma cacao HOM05D003206 ORTHO05D005207 8.6e-07 59.7 537 19.7
HanXRQChr02g0034821 Helianthus annuus HOM05D003206 ORTHO05D005207 1.1e-06 59.3 537 21.2
unitig_699.g19091 Utricularia gibba HOM05D003206 ORTHO05D005207 1.1e-06 59.3 540 18.9
EL10Ac9g21895 Beta vulgaris HOM05D003206 ORTHO05D005207 1.9e-06 58.5 537 20.3
Hma1.2p1_0461F.1_g157780 Hydrangea macrophylla HOM05D003206 ORTHO05D005207 1.9e-06 58.5 585 20.0
MBI14_g04912_MAGBIO Magnolia biondii HOM05D003206 ORTHO05D005207 1.9e-06 58.5 542 21.2
Manes.11G060600 Manihot esculenta HOM05D003206 ORTHO05D005207 1.9e-06 58.5 534 19.5
Pp3c5_10000 Physcomitrium patens HOM05D003206 ORTHO05D005207 1.9e-06 58.5 557 19.9
SGA_v2.0_scaffold5G02725 Striga asiatica HOM05D003206 ORTHO05D005207 1.9e-06 58.5 535 20.4
Ciclev10025360m.g Citrus clementina HOM05D003206 ORTHO05D005207 7.3e-06 56.6 538 19.7
QL02p097130 Quercus lobata HOM05D000306 ORTHO05D007657 7.3e-06 56.6 33 78.8


User provided reference genes

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