Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 6.5e-64 247.3 129 100.0
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 2.0e-57 225.7 129 92.2
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 1.1e-50 203.4 130 84.6
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 1.2e-49 199.9 134 83.6
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 1.2e-36 156.8 128 71.1
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 1.7e-35 152.9 116 69.0
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 3.5e-33 145.2 123 65.0
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 4.7e-30 134.8 116 67.2
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 7.5e-28 127.5 127 60.6
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 1.7e-27 126.3 123 61.0
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.8e-27 125.6 131 56.5
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 1.9e-23 112.8 135 55.6
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 3.3e-23 112.1 126 53.2
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 7.3e-23 110.9 126 52.4
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 1.6e-22 109.8 126 59.5
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 2.1e-22 109.4 120 56.7
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 8.0e-22 107.5 125 52.8
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 1.0e-21 107.1 125 52.0
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 1.4e-21 106.7 120 55.8
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 1.4e-21 106.7 131 56.5
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.8e-21 106.3 124 54.0
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 2.3e-21 105.9 125 56.0
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 3.0e-21 105.5 131 53.4
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 3.0e-21 105.5 124 53.2
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 3.0e-21 105.5 127 50.4
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 5.2e-21 104.8 133 51.1
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 1.2e-20 103.6 127 55.9
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 1.5e-20 103.2 129 53.5
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 2.6e-20 102.4 133 53.4
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 4.4e-20 101.7 115 55.7
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 5.7e-20 101.3 125 51.2
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 5.7e-20 101.3 124 52.4
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 5.7e-20 101.3 127 54.3
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 9.8e-20 100.5 119 54.6
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.3e-19 100.1 128 50.8
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.3e-19 100.1 128 50.8
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.3e-19 100.1 128 50.8
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.3e-19 100.1 124 50.8
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.3e-19 100.1 124 50.8
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 1.7e-19 99.8 119 56.3
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.7e-19 99.8 131 51.9
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.2e-19 99.4 128 50.8
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 4.9e-19 98.2 125 52.0
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 8.3e-19 97.4 125 49.6
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 1.4e-18 96.7 126 51.6
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.4e-18 96.7 126 50.0
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 3.2e-18 95.5 125 52.0
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 9.2e-18 94.0 127 47.2
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 9.2e-18 94.0 121 52.9
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 2.0e-17 92.8 125 50.4
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 2.0e-17 92.8 125 48.0
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 2.7e-17 92.4 118 51.7
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.5e-17 92.0 100 53.0
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 3.5e-17 92.0 119 49.6
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 5.9e-17 91.3 119 48.7
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 5.9e-17 91.3 118 49.2
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 1.3e-16 90.1 118 49.2
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.3e-16 89.4 118 50.8
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 2.3e-16 89.4 119 46.2
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 2.3e-16 89.4 119 46.2
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 3.9e-16 88.6 129 49.6
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 6.6e-16 87.8 118 50.0
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 6.6e-16 87.8 120 45.0
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 6.6e-16 87.8 131 48.1
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 8.6e-16 87.4 100 52.0
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 8.6e-16 87.4 132 46.2
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 1.1e-15 87.0 122 44.3
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.1e-15 87.0 122 48.4
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.1e-15 87.0 122 47.5
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 1.5e-15 86.7 120 45.8
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.9e-15 86.3 120 48.3
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 2.5e-15 85.9 125 48.0
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 2.5e-15 85.9 135 45.9
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 2.5e-15 85.9 117 47.0
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 4.3e-15 85.1 132 47.7
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 4.3e-15 85.1 127 45.7
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 5.6e-15 84.7 118 44.1
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 5.6e-15 84.7 119 49.6
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 7.3e-15 84.3 115 49.6
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 7.3e-15 84.3 115 47.0
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 7.3e-15 84.3 134 43.3
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 9.5e-15 84.0 114 47.4
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.6e-14 83.2 122 45.9
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.6e-14 83.2 119 47.9
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.1e-14 82.8 118 44.1
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.1e-14 82.8 125 44.0
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 2.1e-14 82.8 142 40.8
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 2.1e-14 82.8 122 50.0
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 2.8e-14 82.4 126 46.0
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.6e-14 82.0 118 43.2
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 3.6e-14 82.0 87 56.3
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 6.2e-14 81.3 123 45.5
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 6.2e-14 81.3 119 47.1
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 8.0e-14 80.9 125 45.6
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 1.1e-13 80.5 111 46.8
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 1.8e-13 79.7 119 41.2
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 3.1e-13 79.0 127 44.9
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 4.0e-13 78.6 117 46.2
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 4.0e-13 78.6 121 46.3
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 6.8e-13 77.8 117 46.2
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 6.8e-13 77.8 129 45.0
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 6.8e-13 77.8 118 42.4
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 8.9e-13 77.4 120 44.2
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 8.9e-13 77.4 130 41.5
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 8.9e-13 77.4 116 44.8
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 8.9e-13 77.4 115 49.6
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 1.5e-12 76.6 129 49.6
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 1.5e-12 76.6 132 46.2
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 2.0e-12 76.3 155 39.4
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.6e-12 75.9 132 47.0
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 4.4e-12 75.1 133 40.6
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 4.4e-12 75.1 113 45.1
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 4.4e-12 75.1 79 51.9
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 5.8e-12 74.7 106 41.5
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 5.8e-12 74.7 122 45.1
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 5.8e-12 74.7 122 45.1
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 1.3e-11 73.6 136 41.9
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 1.3e-11 73.6 128 44.5
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.3e-11 73.6 127 42.5
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.7e-11 73.2 112 42.0
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 2.2e-11 72.8 120 43.3
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 2.2e-11 72.8 118 44.9
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 2.9e-11 72.4 133 40.6
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 3.7e-11 72.0 118 44.9
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 4.9e-11 71.6 124 42.7
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 4.9e-11 71.6 124 42.7
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 4.9e-11 71.6 127 43.3
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 1.9e-10 69.7 133 36.1
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 3.2e-10 68.9 129 47.3
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 4.1e-10 68.6 122 45.9
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 5.4e-10 68.2 120 47.5
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 5.4e-10 68.2 120 47.5
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 9.2e-10 67.4 117 44.4
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 9.2e-10 67.4 117 44.4
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 1.6e-09 66.6 116 47.4
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 1.6e-09 66.6 113 44.2
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 1.6e-09 66.6 118 42.4
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 2.0e-09 66.2 119 42.9
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.7e-09 65.9 104 43.3
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 3.5e-09 65.5 130 42.3
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 4.6e-09 65.1 123 43.9
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 6.0e-09 64.7 102 46.1
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 6.0e-09 64.7 136 36.8
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 7.8e-09 64.3 129 41.1
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 2.3e-08 62.8 145 35.2
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 2.3e-08 62.8 118 41.5
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 3.0e-08 62.4 121 40.5
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 6.6e-08 61.2 110 41.8
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 8.6e-08 60.8 53 60.4
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 1.1e-07 60.5 155 33.5
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 1.5e-07 60.1 83 44.6
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 1.5e-07 60.1 83 44.6
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 2.5e-07 59.3 86 39.5
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 3.3e-07 58.9 38 73.7
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 5.6e-07 58.2 132 37.9
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 7.3e-07 57.8 128 39.8
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 9.5e-07 57.4 38 71.1
Os08g0448100 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D005040 1.2e-06 57.0 149 32.2
Nn2g12703 Nelumbo nucifera HOM05D001798 ORTHO05D005040 4.7e-06 55.1 114 34.2


User provided reference genes

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