Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 0.0e+00 1563.9 800 100.0
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 0.0e+00 1431.8 799 89.7
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 0.0e+00 1239.9 804 78.5
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 0.0e+00 1238.4 803 78.7
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 0.0e+00 1205.3 801 74.4
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 0.0e+00 1167.9 803 73.6
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 0.0e+00 1147.5 799 72.1
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 0.0e+00 1141.3 800 71.4
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 0.0e+00 1132.9 797 71.3
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 0.0e+00 1113.6 799 69.0
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 0.0e+00 1099.7 801 69.8
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 0.0e+00 1093.2 801 68.0
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 6.4e-295 1017.3 810 63.7
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 8.7e-292 1006.9 811 63.0
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.5e-291 1006.1 811 63.3
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 1.9e-291 1005.7 812 62.7
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 5.8e-288 994.2 813 62.1
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 3.5e-285 984.9 811 61.9
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 5.6e-283 977.6 807 60.8
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 9.6e-283 976.9 813 61.5
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 1.6e-282 976.1 809 61.1
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 6.2e-282 974.2 811 61.5
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 1.8e-281 972.6 811 61.3
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 4.0e-281 971.5 811 61.2
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 3.4e-280 968.4 811 61.2
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 7.6e-280 967.2 820 61.0
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 8.4e-279 963.8 819 61.1
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 3.2e-278 961.8 808 61.3
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 9.3e-278 960.3 808 61.3
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 2.1e-277 959.1 812 60.8
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 1.8e-276 956.1 874 57.2
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 3.0e-276 955.3 809 61.1
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 5.6e-275 951.0 811 59.4
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 1.3e-274 949.9 809 59.7
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 2.1e-274 949.1 812 59.6
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 6.2e-274 947.6 815 59.6
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 4.0e-273 944.9 810 60.6
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 6.9e-273 944.1 811 58.6
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 2.0e-272 942.6 809 59.3
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 2.6e-272 942.2 813 57.9
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 3.4e-272 941.8 813 59.3
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 1.4e-270 936.4 817 59.7
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 8.7e-268 927.2 809 59.1
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.5e-267 926.4 871 56.7
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 6.9e-265 917.5 810 57.8
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 6.9e-265 917.5 820 58.2
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 9.0e-265 917.1 820 58.2
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 9.0e-265 917.1 812 57.5
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 1.5e-264 916.4 786 60.3
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 2.0e-264 916.0 809 58.1
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 4.5e-264 914.8 811 58.6
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 2.2e-263 912.5 810 57.5
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 3.8e-263 911.8 815 57.8
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 2.1e-261 906.0 806 57.6
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 4.3e-259 898.3 806 57.7
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 5.3e-257 891.3 834 56.7
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 5.9e-256 887.9 814 56.6
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 2.1e-253 879.4 814 55.5
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 4.7e-253 878.2 812 56.0
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 7.9e-253 877.5 815 55.5
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 2.6e-251 872.5 815 54.8
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 3.3e-251 872.1 849 54.8
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 4.4e-251 871.7 816 54.9
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 9.7e-251 870.5 816 54.9
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 1.3e-250 870.2 810 54.9
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 3.1e-249 865.5 809 54.3
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 4.1e-249 865.1 817 55.4
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 2.6e-248 862.4 815 55.3
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 5.9e-248 861.3 815 55.3
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 5.9e-248 861.3 815 55.3
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 7.7e-248 860.9 813 56.7
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 1.0e-247 860.5 815 55.2
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 1.3e-247 860.1 805 55.4
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 3.8e-247 858.6 814 55.4
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 7.2e-246 854.4 823 54.8
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.2e-245 853.6 821 54.4
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 2.1e-245 852.8 811 55.0
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 8.0e-245 850.9 813 56.1
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 8.0e-245 850.9 814 54.9
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 1.1e-243 847.0 814 53.4
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 7.4e-243 844.3 817 55.1
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 1.3e-239 833.6 833 54.1
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 2.2e-239 832.8 822 52.8
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 8.0e-237 824.3 809 53.5
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 1.4e-236 823.5 816 54.2
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 2.8e-226 789.3 814 51.8
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 7.0e-225 784.6 810 51.1
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 1.2e-221 773.9 811 51.7
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 1.2e-221 773.9 805 50.9
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 1.2e-219 767.3 808 50.9
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 9.2e-217 757.7 588 65.3
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 5.9e-216 755.0 827 50.7
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 5.9e-216 755.0 805 50.2
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 3.6e-213 745.7 812 49.5
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 2.6e-211 739.6 624 57.7
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 7.0e-209 731.5 811 48.3
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 1.2e-208 730.7 749 53.0
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 5.4e-193 678.7 806 45.8
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 2.9e-186 656.4 888 44.4
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 3.9e-183 646.0 538 58.9
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 6.2e-181 638.6 812 44.6
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 1.7e-175 620.5 815 44.0
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 1.8e-172 610.5 820 42.6
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 4.9e-170 602.4 844 42.4
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 2.5e-161 573.5 814 42.5
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 2.5e-145 520.4 804 40.8
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 9.7e-142 508.4 462 56.3
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 5.3e-140 502.7 677 42.7
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 5.9e-139 499.2 587 48.2
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 3.9e-135 486.5 839 34.7
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 4.8e-133 479.6 845 36.0
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 2.6e-131 473.8 472 54.2
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 1.9e-129 467.6 826 36.3
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 5.0e-122 443.0 813 38.5
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 6.5e-122 442.6 813 37.0
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 2.9e-114 417.2 834 34.1
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 1.4e-103 381.7 339 57.2
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 2.2e-93 347.8 677 31.5
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 1.5e-89 335.1 390 47.4
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 2.3e-74 284.6 408 41.4
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 4.4e-62 243.8 270 49.6
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 7.6e-62 243.0 271 49.4
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 1.1e-60 239.2 271 49.1
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 5.4e-60 236.9 745 28.3
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 2.6e-54 218.0 154 66.2
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 2.4e-47 194.9 200 53.5
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 6.9e-47 193.4 203 54.2
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 1.4e-44 185.7 837 23.5
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 4.3e-33 147.5 134 56.7
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 9.0e-31 139.8 130 53.8
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 1.3e-29 136.0 456 26.3
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 4.8e-24 117.5 151 45.7
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 2.0e-22 112.1 91 63.7
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 1.0e-18 99.8 107 44.9
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 2.8e-16 91.7 65 69.2
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 2.9e-13 81.6 46 78.3
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 3.8e-13 81.3 46 80.4
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 3.8e-13 81.3 68 55.9
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 4.2e-12 77.8 107 43.9
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 3.6e-11 74.7 107 43.0
arahy.Tifrunner.gnm1.ann1.F8045A Arachis hypogaea HOM05D062897 ORTHO05D023720 1.4e-10 72.8 44 79.5
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 3.0e-10 71.6 125 33.6
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 3.3e-09 68.2 96 41.7
arahy.Tifrunner.gnm1.ann1.NVD3GI Arachis hypogaea HOM05D001215 ORTHO05D001387 4.4e-09 67.8 60 55.0
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 9.7e-09 66.6 55 56.4
BcaC06g36526 Brassica carinata HOM05D004893 ORTHO05D032397 5.9e-06 57.4 37 73.0
C07p03290 Brassica napus HOM05D004893 ORTHO05D032397 5.9e-06 57.4 37 73.0
BolC7t40730H Brassica oleracea HOM05D004893 ORTHO05D032397 5.9e-06 57.4 37 73.0


User provided reference genes

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