Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G144000 Phaseolus vulgaris HOM05D004757 ORTHO05D005743 1.8e-66 255.8 129 100.0
Glyma.13G097500 Glycine max HOM05D004757 ORTHO05D005743 1.8e-58 229.2 129 88.4
Glyma.17G062100 Glycine max HOM05D004757 ORTHO05D005743 5.9e-57 224.2 132 87.1
VMungo1215G0044 Vigna mungo HOM05D004757 ORTHO05D005743 1.9e-55 219.2 111 97.3
Lj4g0011233 Lotus japonicus HOM05D004757 ORTHO05D005743 3.3e-44 181.8 137 74.5
Medtr4g127810 Medicago truncatula HOM05D004757 ORTHO05D005743 7.5e-44 180.6 140 71.4
TPR.G5446 Trifolium pratense HOM05D004757 ORTHO05D005743 4.1e-42 174.9 141 70.2
Psat4g012760 Pisum sativum HOM05D004757 ORTHO05D005743 1.3e-40 169.9 143 66.4
Ca_21237_v3 Cicer arietinum L. HOM05D004757 ORTHO05D005743 2.9e-40 168.7 115 75.7
Cfa013398 Carpinus fangiana HOM05D004757 ORTHO05D005743 1.9e-39 166.0 133 66.9
ClCG06G013460 Citrullus lanatus HOM05D004757 ORTHO05D005743 7.2e-39 164.1 139 64.7
CiPaw.07G193700 Carya illinoinensis HOM05D004757 ORTHO05D005743 9.4e-39 163.7 133 66.9
CsaV3_1G031720 Cucumis sativus L. HOM05D004757 ORTHO05D005743 4.7e-38 161.4 139 64.0
Lalb_Chr13g0300141 Lupinus albus HOM05D004757 ORTHO05D005743 1.4e-37 159.8 134 63.4
Manes.06G022800 Manihot esculenta HOM05D004757 ORTHO05D005743 2.3e-37 159.1 137 67.2
Sed0003925 Sechium edule HOM05D004757 ORTHO05D005743 4.0e-37 158.3 145 63.4
Sed0015670 Sechium edule HOM05D004757 ORTHO05D005743 2.0e-36 156.0 133 65.4
Atru.chr7.878 Acer truncatum HOM05D004757 ORTHO05D005743 4.4e-36 154.8 135 65.2
Gohir.A08G083700 Gossypium hirsutum HOM05D004757 ORTHO05D005743 5.7e-36 154.5 139 61.9
Potri.006G166400 Populus trichocarpa HOM05D004757 ORTHO05D005743 5.7e-36 154.5 149 60.4
AT2G18910 Arabidopsis thaliana HOM05D004757 ORTHO05D005743 1.7e-35 152.9 136 63.2
Gohir.D08G093400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 3.7e-35 151.8 139 61.2
AL3G53010 Arabidopsis lyrata HOM05D004757 ORTHO05D005743 4.8e-35 151.4 136 62.5
Lalb_Chr12g0199461 Lupinus albus HOM05D004757 ORTHO05D005743 4.8e-35 151.4 136 62.5
BcaB07g31638 Brassica carinata HOM05D004757 ORTHO05D005743 1.1e-34 150.2 136 61.0
A07p01750 Brassica napus HOM05D004757 ORTHO05D005743 2.4e-34 149.1 136 61.8
C07p03670 Brassica napus HOM05D004757 ORTHO05D005743 2.4e-34 149.1 136 61.8
BolC7t40764H Brassica oleracea HOM05D004757 ORTHO05D005743 2.4e-34 149.1 136 61.8
Cpa.g.sc95.44 Carica papaya HOM05D004757 ORTHO05D005743 2.4e-34 149.1 140 63.6
Duzib150G0244 Durio zibethinus HOM05D004757 ORTHO05D005743 2.4e-34 149.1 140 59.3
MD16G1255800 Malus domestica HOM05D004757 ORTHO05D005743 2.4e-34 149.1 146 58.9
Potri.018G090900 Populus trichocarpa HOM05D004757 ORTHO05D005743 2.4e-34 149.1 145 59.3
Prupe.1G082700 Prunus persica HOM05D004757 ORTHO05D005743 2.4e-34 149.1 133 63.2
Manes.14G157383 Manihot esculenta HOM05D004757 ORTHO05D005743 3.1e-34 148.7 138 61.6
BcaC04g22879 Brassica carinata HOM05D004757 ORTHO05D005743 7.0e-34 147.5 136 61.8
CARHR109470 Cardamine hirsuta HOM05D004757 ORTHO05D005743 7.0e-34 147.5 136 61.0
Duzib170G0153 Durio zibethinus HOM05D004757 ORTHO05D005743 7.0e-34 147.5 144 58.3
C03p59380 Brassica napus HOM05D004757 ORTHO05D005743 1.2e-33 146.7 136 60.3
RcHm_v2.0_Chr4g0401201 Rosa chinensis HOM05D004757 ORTHO05D005743 1.2e-33 146.7 139 60.4
FAN17G1906 Fragaria x ananassa HOM05D004757 ORTHO05D005743 1.6e-33 146.4 135 60.7
Aa31LG8G16000 Aethionema arabicum HOM05D004757 ORTHO05D005743 2.0e-33 146.0 137 59.1
BcaB03g16684 Brassica carinata HOM05D004757 ORTHO05D005743 2.0e-33 146.0 136 61.8
Carub.0003s3315 Capsella rubella HOM05D004757 ORTHO05D005743 2.0e-33 146.0 136 60.3
Thecc.09G175100 Theobroma cacao HOM05D004757 ORTHO05D005743 2.0e-33 146.0 145 58.6
FvH4_4g07900 Fragaria vesca HOM05D004757 ORTHO05D005743 2.7e-33 145.6 140 59.3
A09p12120 Brassica napus HOM05D004757 ORTHO05D005743 3.5e-33 145.2 137 60.6
BolC3t18202H Brassica oleracea HOM05D004757 ORTHO05D005743 4.5e-33 144.8 136 59.6
TWI34G1741 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 4.5e-33 144.8 137 59.1
BolC9t54334H Brassica oleracea HOM05D004757 ORTHO05D005743 1.0e-32 143.7 146 57.5
Haze_21940 Corylus avellana HOM05D004757 ORTHO05D005743 1.3e-32 143.3 115 67.0
Gorai.004G027500 Gossypium raimondii HOM05D004757 ORTHO05D005743 1.7e-32 142.9 147 57.1
Duzib168G0914 Durio zibethinus HOM05D004757 ORTHO05D005743 2.3e-32 142.5 138 58.7
Hma1.2p1_1303F.1_g274440 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 2.3e-32 142.5 160 53.1
THA.LOC104803943 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 2.3e-32 142.5 136 58.8
BraA09t36856Z Brassica rapa HOM05D004757 ORTHO05D005743 2.9e-32 142.1 137 60.6
MELO3C017451.2 Cucumis melo HOM05D004757 ORTHO05D005743 2.9e-32 142.1 121 62.8
Peaxi162Scf01558g00012 Petunia axillaris HOM05D004757 ORTHO05D005743 2.9e-32 142.1 150 52.7
Sp3g32380 Schrenkiella parvula HOM05D004757 ORTHO05D005743 2.9e-32 142.1 132 58.3
Gohir.D08G030000 Gossypium hirsutum HOM05D004757 ORTHO05D005743 8.6e-32 140.6 147 56.5
Hma1.2p1_0935F.1_g238550 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 1.1e-31 140.2 138 59.4
Hma1.2p1_2317F.1_g319740 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 1.5e-31 139.8 139 59.0
QL02p098330 Quercus lobata HOM05D004757 ORTHO05D005743 1.5e-31 139.8 172 50.6
BraA06t26238Z Brassica rapa HOM05D004757 ORTHO05D005743 2.5e-31 139.0 133 57.9
TAR626G1857 Trochodendron aralioides HOM05D004757 ORTHO05D005743 2.5e-31 139.0 137 58.4
MD13G1249500 Malus domestica HOM05D004757 ORTHO05D005743 3.2e-31 138.7 140 57.9
Actinidia01305 Actinidia chinensis HOM05D004757 ORTHO05D005743 4.2e-31 138.3 135 58.5
C09p14310 Brassica napus HOM05D004757 ORTHO05D005743 4.2e-31 138.3 146 56.8
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 4.2e-31 138.3 127 61.4
TWI63G0987 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 5.5e-31 137.9 135 58.5
Thhalv10022848m.g Eutrema salsugineum HOM05D004757 ORTHO05D005743 7.2e-31 137.5 132 58.3
Gohir.A08G019400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 1.2e-30 136.7 145 55.2
Dinv19553 Davidia involucrata HOM05D004757 ORTHO05D005743 1.6e-30 136.3 125 63.2
A06p33080 Brassica napus HOM05D004757 ORTHO05D005743 2.8e-30 135.6 130 54.6
THA.LOC104803488 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 6.1e-30 134.4 139 56.1
Sc08g0005260 Simmondsia chinensis HOM05D004757 ORTHO05D005743 8.0e-30 134.0 126 57.9
Nitab4.5_0010128g0010 Nicotiana tabacum HOM05D004757 ORTHO05D005743 1.4e-29 133.3 148 54.1
FAN12G2780 Fragaria x ananassa HOM05D004757 ORTHO05D005743 2.3e-29 132.5 163 50.9
BcaC06g36489 Brassica carinata HOM05D004757 ORTHO05D005743 3.0e-29 132.1 116 62.9
unitig_21.g20652 Utricularia gibba HOM05D004757 ORTHO05D005743 4.0e-29 131.7 138 55.1
Gorai.004G099000 Gossypium raimondii HOM05D004757 ORTHO05D005743 5.2e-29 131.3 128 59.4
FAN07G0988 Fragaria x ananassa HOM05D004757 ORTHO05D005743 8.8e-29 130.6 163 50.3
FAN22G2108 Fragaria x ananassa HOM05D004757 ORTHO05D005743 8.8e-29 130.6 163 50.3
Ciclev10009829m.g Citrus clementina HOM05D004757 ORTHO05D005743 1.5e-28 129.8 122 59.8
PSO170G5353 Papaver somniferum HOM05D004757 ORTHO05D005743 1.5e-28 129.8 181 47.0
CANSAT11G1025 Cannabis sativa HOM05D004757 ORTHO05D005743 2.0e-28 129.4 143 53.8
PSO063G6152 Papaver somniferum HOM05D004757 ORTHO05D005743 2.0e-28 129.4 181 47.0
GSVIVG01035530001 Vitis vinifera HOM05D004757 ORTHO05D005743 2.0e-28 129.4 135 55.6
PGR044G0017 Punica granatum HOM05D004757 ORTHO05D005743 2.6e-28 129.0 130 55.4
Actinidia19844 Actinidia chinensis HOM05D004757 ORTHO05D005743 3.4e-28 128.6 132 56.8
Cc06_g12990 Coffea canephora HOM05D004757 ORTHO05D005743 3.4e-28 128.6 164 50.0
PGR142G2781 Punica granatum HOM05D004757 ORTHO05D005743 3.4e-28 128.6 148 55.4
EL10Ac8g18296 Beta vulgaris HOM05D004757 ORTHO05D005743 1.3e-27 126.7 132 57.6
CDE04G2108 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 2.8e-27 125.6 131 52.7
HanXRQChr09g0254201 Helianthus annuus HOM05D004757 ORTHO05D005743 2.8e-27 125.6 116 62.1
Lsat_1_v5_gn_7_54961 Lactuca sativa HOM05D004757 ORTHO05D005743 8.3e-27 124.0 130 55.4
Solyc07g006960.3 Solanum lycopersicum HOM05D004757 ORTHO05D005743 8.3e-27 124.0 131 55.7
CiPaw.08G035200 Carya illinoinensis HOM05D004757 ORTHO05D005743 1.1e-26 123.6 145 52.4
Eucgr.C00145 Eucalyptus grandis HOM05D004757 ORTHO05D005743 1.4e-26 123.2 112 58.9
Migut.J01503 Erythranthe guttata HOM05D004757 ORTHO05D005743 4.1e-26 121.7 140 51.4
HanXRQChr09g0244371 Helianthus annuus HOM05D004757 ORTHO05D005743 4.1e-26 121.7 111 59.5
Ah.14g083740 Amaranthus hybridus HOM05D004757 ORTHO05D005743 7.0e-26 120.9 131 58.8
ECA240G0762 Erigeron canadensis HOM05D004757 ORTHO05D005743 9.2e-26 120.6 130 53.1
Hund09034 Selenicereus undatus HOM05D004757 ORTHO05D005743 9.2e-26 120.6 128 53.9
ECA234G2687 Erigeron canadensis HOM05D004757 ORTHO05D005743 1.2e-25 120.2 135 54.8
Migut.K00229 Erythranthe guttata HOM05D004757 ORTHO05D005743 1.2e-25 120.2 137 51.8
Oeu025694.3 Olea europaea HOM05D004757 ORTHO05D005743 1.2e-25 120.2 120 55.0
Lsat_1_v5_gn_5_85101 Lactuca sativa HOM05D004757 ORTHO05D005743 1.6e-25 119.8 132 51.5
CDE02G3269 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 3.5e-25 118.6 135 49.6
MSTRG.19719 Avicennia marina HOM05D004757 ORTHO05D005743 1.3e-24 116.7 139 49.6
Sopen07g003050 Solanum pennellii HOM05D004757 ORTHO05D005743 1.3e-24 116.7 136 52.2
Rhsim01G0003200 Rhododendron simsii HOM05D004757 ORTHO05D005743 2.3e-24 115.9 136 55.1
TAR636G1688 Trochodendron aralioides HOM05D004757 ORTHO05D005743 2.3e-24 115.9 119 54.6
Sc14g0001290 Simmondsia chinensis HOM05D004757 ORTHO05D005743 2.9e-24 115.5 109 56.0
DCAR_020127 Daucus carota HOM05D004757 ORTHO05D005743 3.8e-24 115.2 132 53.0
ECA236G5014 Erigeron canadensis HOM05D004757 ORTHO05D005743 6.6e-24 114.4 121 52.1
Oeu025209.1 Olea europaea HOM05D004757 ORTHO05D005743 1.9e-23 112.8 122 52.5
SalBow6G1691 Salvia bowleyana HOM05D004757 ORTHO05D005743 1.9e-23 112.8 146 50.0
Aqoxy7G02958 Aquilegia oxysepala HOM05D004757 ORTHO05D005743 5.6e-23 111.3 147 47.6
ATR0580G064 Amborella trichopoda HOM05D004757 ORTHO05D005743 9.5e-23 110.5 126 47.6
Nn2g12725 Nelumbo nucifera HOM05D004757 ORTHO05D005743 9.5e-23 110.5 136 48.5
Sabra06G0128000 Salix brachista HOM05D004757 ORTHO05D005743 9.5e-23 110.5 160 46.2
PGSC0003DMG400018757 Solanum tuberosum HOM05D004757 ORTHO05D005743 1.2e-22 110.2 123 55.3
MBI16_g31788_MAGBIO Magnolia biondii HOM05D004757 ORTHO05D005743 2.1e-22 109.4 149 47.0
HanXRQChr10g0308501 Helianthus annuus HOM05D004757 ORTHO05D005743 2.8e-22 109.0 123 52.0
TAR383G0800 Trochodendron aralioides HOM05D004757 ORTHO05D005743 3.6e-22 108.6 126 51.6
SGA_v2.0_scaffold66G22433 Striga asiatica HOM05D004757 ORTHO05D005743 6.1e-22 107.8 116 53.4
CSS0015413 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 1.0e-21 107.1 119 54.6
Nn8g40409 Nelumbo nucifera HOM05D004757 ORTHO05D005743 5.2e-21 104.8 155 43.9
vmacro13132 Vaccinium macrocarpon HOM05D004757 ORTHO05D005743 6.8e-21 104.4 171 43.9
MSTRG.6239 Avicennia marina HOM05D004757 ORTHO05D005743 8.9e-21 104.0 124 49.2
Sabra18G0078100 Salix brachista HOM05D004757 ORTHO05D005743 1.5e-20 103.2 160 45.0
HanXRQChr05g0142021 Helianthus annuus HOM05D004757 ORTHO05D005743 4.4e-20 101.7 107 52.3
Lsat_1_v5_gn_8_68041 Lactuca sativa HOM05D004757 ORTHO05D005743 5.7e-20 101.3 119 48.7
HPP92_015369 Vanilla planifolia HOM05D004757 ORTHO05D005743 8.3e-19 97.4 145 45.5
CSS0012735 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 1.1e-18 97.1 132 50.0
CAN.G1464.4 Capsicum annuum HOM05D004757 ORTHO05D005743 1.1e-18 97.1 120 48.3
Eucgr.L02640 Eucalyptus grandis HOM05D004757 ORTHO05D005743 1.4e-18 96.7 110 47.3
Peaxi162Scf00200g00183 Petunia axillaris HOM05D004757 ORTHO05D005743 5.0e-16 88.2 94 56.4
ATR0030G045 Amborella trichopoda HOM05D004757 ORTHO05D005743 6.6e-16 87.8 124 46.0
Ah.09g229970 Amaranthus hybridus HOM05D004757 ORTHO05D005743 1.1e-15 87.0 153 42.5
Os02g0461900 Oryza sativa ssp. japonica HOM05D004757 ORTHO05D005743 1.6e-14 83.2 176 38.1
Zm00001eb180540 Zea mays HOM05D004757 ORTHO05D005743 2.1e-14 82.8 131 43.5
Peaxi162Scf00200g01819 Petunia axillaris HOM05D004757 ORTHO05D005743 4.7e-14 81.6 87 51.7
Zm00001eb087060 Zea mays HOM05D004757 ORTHO05D005743 5.8e-12 74.7 73 47.9
Zm00001eb420280 Zea mays HOM05D004757 ORTHO05D005743 7.5e-12 74.3 147 35.4
Dinv41223 Davidia involucrata HOM05D004757 ORTHO05D005743 1.3e-11 73.6 99 48.5
Zm00001eb236700 Zea mays HOM05D004757 ORTHO05D005743 2.2e-11 72.8 174 33.9
AUR62043442 Chenopodium quinoa HOM05D000216 ORTHO05D003518 7.0e-10 67.8 90 42.2
Peaxi162Scf00200g00182 Petunia axillaris HOM05D004757 ORTHO05D005743 6.6e-08 61.2 99 45.5
Peaxi162Scf00627g00011 Petunia axillaris HOM05D004757 ORTHO05D005743 6.6e-08 61.2 89 47.2
Nitab4.5_0000957g0030 Nicotiana tabacum HOM05D004757 ORTHO05D005743 3.6e-06 55.5 51 62.7


User provided reference genes

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