Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G141600 Phaseolus vulgaris HOM05D002763 ORTHO05D002972 7.3e-68 260.4 127 100.0
VMungo1215G2823 Vigna mungo HOM05D002763 ORTHO05D002972 9.5e-60 233.4 127 89.8
Glyma.13G100300 Glycine max HOM05D002763 ORTHO05D002972 5.1e-45 184.5 135 70.4
Glyma.17G059600 Glycine max HOM05D002763 ORTHO05D002972 6.5e-24 114.4 80 71.2
arahy.Tifrunner.gnm1.ann1.UM017F Arachis hypogaea HOM05D002763 ORTHO05D002972 2.8e-19 99.0 189 39.2
arahy.Tifrunner.gnm1.ann1.TSPZ50 Arachis hypogaea HOM05D002763 ORTHO05D002972 3.7e-19 98.6 188 38.8
Lj6g0007330 Lotus japonicus HOM05D002763 ORTHO05D002972 1.8e-18 96.3 164 39.6
Lalb_Chr12g0199601 Lupinus albus HOM05D002763 ORTHO05D002972 3.8e-16 88.6 178 38.2
Lalb_Chr07g0180641 Lupinus albus HOM05D002763 ORTHO05D002972 7.2e-15 84.3 177 38.4
Ca_02103_v3 Cicer arietinum L. HOM05D002763 ORTHO05D002972 1.6e-14 83.2 180 35.6
Lalb_Chr08g0231891 Lupinus albus HOM05D002763 ORTHO05D002972 5.1e-13 78.2 169 34.9
Medtr2g037970 Medicago truncatula HOM05D002763 ORTHO05D002972 1.1e-12 77.0 173 36.4
Psat1g145680 Pisum sativum HOM05D002763 ORTHO05D002972 1.3e-11 73.6 177 35.0
VMungo1309G0960 Vigna mungo HOM05D002763 ORTHO05D002972 2.2e-11 72.8 168 35.1
Migut.J00801 Erythranthe guttata HOM05D002763 ORTHO05D002972 3.7e-11 72.0 97 42.3
Phvul.009G236400 Phaseolus vulgaris HOM05D002763 ORTHO05D002972 4.8e-11 71.6 167 32.9
CSS0013694 Camellia sinensis var. sinensis HOM05D002763 ORTHO05D002972 6.3e-11 71.2 152 33.6
CiPaw.01G090200 Carya illinoinensis HOM05D002763 ORTHO05D002972 8.2e-11 70.9 155 33.5
Actinidia02502 Actinidia chinensis HOM05D002763 ORTHO05D002972 1.1e-10 70.5 170 30.6
Lalb_Chr11g0074791 Lupinus albus HOM05D002763 ORTHO05D002972 1.1e-10 70.5 117 37.6
Oeu044672.1 Olea europaea HOM05D002763 ORTHO05D002972 1.4e-10 70.1 94 38.3
TPR.G7927 Trifolium pratense HOM05D002763 ORTHO05D002972 1.4e-10 70.1 95 43.2
Sabra18G0116700 Salix brachista HOM05D002763 ORTHO05D002972 2.4e-10 69.3 110 45.5
Migut.L01884 Erythranthe guttata HOM05D002763 ORTHO05D002972 5.3e-10 68.2 101 38.6
SalBow5G4526 Salvia bowleyana HOM05D002763 ORTHO05D002972 6.9e-10 67.8 101 36.6
Glyma.09G059400 Glycine max HOM05D002763 ORTHO05D002972 1.5e-09 66.6 145 34.5
FAN22G0322 Fragaria x ananassa HOM05D002763 ORTHO05D002972 5.9e-09 64.7 91 41.8
Atru.chr1.2697 Acer truncatum HOM05D002763 ORTHO05D002972 1.0e-08 63.9 82 43.9
MSTRG.5942 Avicennia marina HOM05D002763 ORTHO05D002972 1.0e-08 63.9 96 37.5
Sed0016901 Sechium edule HOM05D002763 ORTHO05D002972 1.0e-08 63.9 100 32.0
Ciclev10009733m.g Citrus clementina HOM05D002763 ORTHO05D002972 1.3e-08 63.5 89 39.3
Oeu064555.1 Olea europaea HOM05D002763 ORTHO05D002972 1.3e-08 63.5 104 34.6
Carub.0002s2571 Capsella rubella HOM05D002763 ORTHO05D002972 1.7e-08 63.2 103 35.9
Ciclev10026672m.g Citrus clementina HOM05D002763 ORTHO05D002972 1.7e-08 63.2 99 37.4
Hund29634 Selenicereus undatus HOM05D002763 ORTHO05D002972 1.7e-08 63.2 79 41.8
TAR383G0950 Trochodendron aralioides HOM05D002763 ORTHO05D002972 1.7e-08 63.2 147 30.6
Hund29632 Selenicereus undatus HOM05D002763 ORTHO05D002972 2.9e-08 62.4 78 41.0
Potri.018G142900 Populus trichocarpa HOM05D002763 ORTHO05D002972 3.8e-08 62.0 114 39.5
HanXRQChr14g0438641 Helianthus annuus HOM05D002763 ORTHO05D002972 5.0e-08 61.6 88 38.6
Manes.14G007800 Manihot esculenta HOM05D002763 ORTHO05D002972 5.0e-08 61.6 114 35.1
SalBow3G4096 Salvia bowleyana HOM05D002763 ORTHO05D002972 5.0e-08 61.6 91 37.4
Sp5g33900 Schrenkiella parvula HOM05D002763 ORTHO05D002972 5.0e-08 61.6 96 37.5
THA.LOC104808102 Tarenaya hassleriana HOM05D002763 ORTHO05D002972 5.0e-08 61.6 97 37.1
Cfa013449 Carpinus fangiana HOM05D002763 ORTHO05D002972 6.5e-08 61.2 115 33.9
Peaxi162Scf01600g00015 Petunia axillaris HOM05D002763 ORTHO05D002972 6.5e-08 61.2 105 37.1
MD16G1249400 Malus domestica HOM05D002763 ORTHO05D002972 8.5e-08 60.8 98 36.7
Manes.06G177000 Manihot esculenta HOM05D002763 ORTHO05D002972 8.5e-08 60.8 112 34.8
Nn8g40794 Nelumbo nucifera HOM05D002763 ORTHO05D002972 8.5e-08 60.8 161 29.2
vmacro20817 Vaccinium macrocarpon HOM05D002763 ORTHO05D002972 8.5e-08 60.8 101 35.6
DCAR_022613 Daucus carota HOM05D002763 ORTHO05D002972 1.1e-07 60.5 113 32.7
Nitab4.5_0003757g0040 Nicotiana tabacum HOM05D002763 ORTHO05D002972 1.1e-07 60.5 122 32.0
AL2G39300 Arabidopsis lyrata HOM05D002763 ORTHO05D002972 1.4e-07 60.1 97 36.1
arahy.Tifrunner.gnm1.ann1.N1GZ92 Arachis hypogaea HOM05D002763 ORTHO05D002972 1.4e-07 60.1 118 33.1
arahy.Tifrunner.gnm1.ann1.QW48HW Arachis hypogaea HOM05D002763 ORTHO05D002972 1.4e-07 60.1 118 33.1
Cpa.g.sc155.21 Carica papaya HOM05D002763 ORTHO05D002972 1.4e-07 60.1 99 36.4
DCAR_019803 Daucus carota HOM05D002763 ORTHO05D002972 1.4e-07 60.1 92 34.8
RcHm_v2.0_Chr2g0149611 Rosa chinensis HOM05D002763 ORTHO05D002972 1.4e-07 60.1 90 40.0
TWI12G0424 Tripterygium wilfordii HOM05D002763 ORTHO05D002972 1.4e-07 60.1 136 32.4
Aa31LG4G2120 Aethionema arabicum HOM05D002763 ORTHO05D002972 1.9e-07 59.7 70 42.9
Gohir.D10G002500 Gossypium hirsutum HOM05D002763 ORTHO05D002972 1.9e-07 59.7 65 43.1
Gorai.011G002900 Gossypium raimondii HOM05D002763 ORTHO05D002972 1.9e-07 59.7 65 43.1
TWI75G1671 Tripterygium wilfordii HOM05D002763 ORTHO05D002972 1.9e-07 59.7 136 35.3
AT1G78890 Arabidopsis thaliana HOM05D002763 ORTHO05D002972 2.5e-07 59.3 36 63.9
CARHR072470 Cardamine hirsuta HOM05D002763 ORTHO05D002972 2.5e-07 59.3 126 31.7
Gohir.A10G002500 Gossypium hirsutum HOM05D002763 ORTHO05D002972 2.5e-07 59.3 65 43.1
Nitab4.5_0000617g0050 Nicotiana tabacum HOM05D002763 ORTHO05D002972 2.5e-07 59.3 47 53.2
Nitab4.5_0008862g0030 Nicotiana tabacum HOM05D002763 ORTHO05D002972 2.5e-07 59.3 47 53.2
Prupe.3G021500 Prunus persica HOM05D002763 ORTHO05D002972 2.5e-07 59.3 92 37.0
AL1G29010 Arabidopsis lyrata HOM05D002763 ORTHO05D002972 3.2e-07 58.9 96 37.5
MELO3C017432.2 Cucumis melo HOM05D002763 ORTHO05D002972 3.2e-07 58.9 93 35.5
CsaV3_1G031850 Cucumis sativus L. HOM05D002763 ORTHO05D002972 3.2e-07 58.9 93 35.5
Dinv41172 Davidia involucrata HOM05D002763 ORTHO05D002972 3.2e-07 58.9 69 39.1
Eucgr.C00119 Eucalyptus grandis HOM05D002763 ORTHO05D002972 3.2e-07 58.9 42 57.1
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 3.2e-07 58.9 133 33.1
FAN17G1264 Fragaria x ananassa HOM05D002763 ORTHO05D002972 3.2e-07 58.9 137 32.8
RcHm_v2.0_Chr4g0399691 Rosa chinensis HOM05D002763 ORTHO05D002972 3.2e-07 58.9 96 37.5
FAN12G1372 Fragaria x ananassa HOM05D002763 ORTHO05D002972 4.2e-07 58.5 87 41.4
Oeu006848.1 Olea europaea HOM05D002763 ORTHO05D002972 4.2e-07 58.5 37 56.8
EL10Ac7g18164 Beta vulgaris HOM05D002763 ORTHO05D002972 5.5e-07 58.2 85 36.5
Dinv25438 Davidia involucrata HOM05D002763 ORTHO05D002972 5.5e-07 58.2 69 39.1
FvH4_4g07330 Fragaria vesca HOM05D002763 ORTHO05D002972 7.2e-07 57.8 138 31.9
FAN02G2417 Fragaria x ananassa HOM05D002763 ORTHO05D002972 7.2e-07 57.8 93 36.6
HanXRQChr03g0068451 Helianthus annuus HOM05D002763 ORTHO05D002972 7.2e-07 57.8 122 32.8
Hma1.2p1_1326F.1_g275800 Hydrangea macrophylla HOM05D002763 ORTHO05D002972 7.2e-07 57.8 175 27.4
Nitab4.5_0002354g0020 Nicotiana tabacum HOM05D002763 ORTHO05D002972 7.2e-07 57.8 122 31.1
Potri.008G005900 Populus trichocarpa HOM05D002763 ORTHO05D002972 7.2e-07 57.8 150 33.3
Sed0004372 Sechium edule HOM05D002763 ORTHO05D002972 7.2e-07 57.8 128 28.9
SGA_v2.0_scaffold31G12762 Striga asiatica HOM05D002763 ORTHO05D002972 7.2e-07 57.8 94 33.0
Actinidia00644 Actinidia chinensis HOM05D002763 ORTHO05D002972 9.4e-07 57.4 42 52.4
EL10Ac8g18334 Beta vulgaris HOM05D002763 ORTHO05D002972 9.4e-07 57.4 153 32.7
Glyma.15G165700 Glycine max HOM05D002763 ORTHO05D002972 9.4e-07 57.4 144 32.6
BcaB03g16049 Brassica carinata HOM05D002763 ORTHO05D002972 1.2e-06 57.0 96 39.6
Cpa.g.c27842.1 Carica papaya HOM05D002763 ORTHO05D002972 1.2e-06 57.0 37 62.2
Duzib235G0511 Durio zibethinus HOM05D002763 ORTHO05D002972 1.2e-06 57.0 99 34.3
Gohir.D13G213000 Gossypium hirsutum HOM05D002763 ORTHO05D002972 1.2e-06 57.0 106 34.0
MD17G1163800 Malus domestica HOM05D002763 ORTHO05D002972 1.2e-06 57.0 36 58.3
Nn2g12759 Nelumbo nucifera HOM05D002763 ORTHO05D002972 1.2e-06 57.0 103 34.0
Os08g0230000 Oryza sativa ssp. japonica HOM05D002763 ORTHO05D002972 1.2e-06 57.0 41 58.5
Sp1g14980 Schrenkiella parvula HOM05D002763 ORTHO05D002972 1.2e-06 57.0 36 58.3
Thecc.06G058900 Theobroma cacao HOM05D002763 ORTHO05D002972 1.2e-06 57.0 98 35.7
AT1G16840 Arabidopsis thaliana HOM05D002763 ORTHO05D002972 1.6e-06 56.6 36 58.3
CiPaw.08G032700 Carya illinoinensis HOM05D002763 ORTHO05D002972 1.6e-06 56.6 37 59.5
Thhalv10019101m.g Eutrema salsugineum HOM05D002763 ORTHO05D002972 1.6e-06 56.6 96 35.4
FvH4_6g37060 Fragaria vesca HOM05D002763 ORTHO05D002972 1.6e-06 56.6 93 36.6
FAN14G0253 Fragaria x ananassa HOM05D002763 ORTHO05D002972 1.6e-06 56.6 93 36.6
Gohir.A13G208600 Gossypium hirsutum HOM05D002763 ORTHO05D002972 1.6e-06 56.6 119 35.3
Lsat_1_v5_gn_7_56340 Lactuca sativa HOM05D002763 ORTHO05D002972 1.6e-06 56.6 166 30.1
Solyc06g063320.3 Solanum lycopersicum HOM05D002763 ORTHO05D002972 1.6e-06 56.6 120 30.8
Sopen06g022790 Solanum pennellii HOM05D002763 ORTHO05D002972 1.6e-06 56.6 120 30.8
Sopen07g004710 Solanum pennellii HOM05D002763 ORTHO05D002972 1.6e-06 56.6 39 59.0
PGSC0003DMG400026511 Solanum tuberosum HOM05D002763 ORTHO05D002972 1.6e-06 56.6 120 30.8
PGSC0003DMG400028728 Solanum tuberosum HOM05D002763 ORTHO05D002972 1.6e-06 56.6 39 59.0
THA.LOC104813630 Tarenaya hassleriana HOM05D002763 ORTHO05D002972 1.6e-06 56.6 89 32.6
BcaC07g41386 Brassica carinata HOM05D002763 ORTHO05D002972 2.1e-06 56.2 36 55.6
A09p60730 Brassica napus HOM05D002763 ORTHO05D002972 2.1e-06 56.2 36 55.6
C08p44230 Brassica napus HOM05D002763 ORTHO05D002972 2.1e-06 56.2 36 55.6
BolC8t51969H Brassica oleracea HOM05D002763 ORTHO05D002972 2.1e-06 56.2 36 55.6
BraA09t41443Z Brassica rapa HOM05D002763 ORTHO05D002972 2.1e-06 56.2 36 55.6
CARHR017310 Cardamine hirsuta HOM05D002763 ORTHO05D002972 2.1e-06 56.2 83 36.1
Thhalv10008939m.g Eutrema salsugineum HOM05D002763 ORTHO05D002972 2.1e-06 56.2 98 34.7
Gohir.D06G122400 Gossypium hirsutum HOM05D002763 ORTHO05D002972 2.1e-06 56.2 88 35.2
Gorai.010G142600 Gossypium raimondii HOM05D002763 ORTHO05D002972 2.1e-06 56.2 90 36.7
Peaxi162Scf00038g02522 Petunia axillaris HOM05D002763 ORTHO05D002972 2.1e-06 56.2 132 31.8
Solyc07g008770.4 Solanum lycopersicum HOM05D002763 ORTHO05D002972 2.1e-06 56.2 104 35.6
Aa31LG2G20580 Aethionema arabicum HOM05D002763 ORTHO05D002972 2.7e-06 55.8 34 61.8
BcaC08g47445 Brassica carinata HOM05D002763 ORTHO05D002972 2.7e-06 55.8 33 66.7
A07p44070 Brassica napus HOM05D003490 ORTHO05D004835 2.7e-06 55.8 33 66.7
C06p52800 Brassica napus HOM05D003490 ORTHO05D004835 2.7e-06 55.8 33 66.7
BolC6t40296H Brassica oleracea HOM05D002763 ORTHO05D002972 2.7e-06 55.8 33 66.7
BraA07t31914Z Brassica rapa HOM05D002763 ORTHO05D002972 2.7e-06 55.8 33 66.7
Carub.0001s1658 Capsella rubella HOM05D002763 ORTHO05D002972 2.7e-06 55.8 36 55.6
Duzib168G2097 Durio zibethinus HOM05D002763 ORTHO05D002972 2.7e-06 55.8 84 40.5
HanXRQChr05g0140091 Helianthus annuus HOM05D002763 ORTHO05D002972 2.7e-06 55.8 89 39.3
PGR142G4135 Punica granatum HOM05D002763 ORTHO05D002972 2.7e-06 55.8 88 37.5
QL01p020768 Quercus lobata HOM05D002763 ORTHO05D002972 2.7e-06 55.8 46 54.3
QL04p081468 Quercus lobata HOM05D002763 ORTHO05D002972 2.7e-06 55.8 46 54.3
TWI63G0655 Tripterygium wilfordii HOM05D002763 ORTHO05D002972 2.7e-06 55.8 109 33.9
Aa31LG7G1280 Aethionema arabicum HOM05D002763 ORTHO05D002972 3.6e-06 55.5 36 55.6
CiPaw.07G196700 Carya illinoinensis HOM05D002763 ORTHO05D002972 3.6e-06 55.5 116 31.0
ClCG06G013570 Citrullus lanatus HOM05D002763 ORTHO05D002972 3.6e-06 55.5 98 32.7
FAN09G4381 Fragaria x ananassa HOM05D002763 ORTHO05D002972 3.6e-06 55.5 93 35.5
Hma1.2p1_0517F.1_g170750 Hydrangea macrophylla HOM05D002763 ORTHO05D002972 3.6e-06 55.5 48 47.9
Potri.010G252800 Populus trichocarpa HOM05D002763 ORTHO05D002972 3.6e-06 55.5 36 58.3
Prupe.1G076200 Prunus persica HOM05D002763 ORTHO05D002972 3.6e-06 55.5 104 32.7
QL05p083992 Quercus lobata HOM05D002763 ORTHO05D002972 3.6e-06 55.5 40 52.5
SGA_v2.0_scaffold231G43411 Striga asiatica HOM05D002763 ORTHO05D002972 3.6e-06 55.5 37 56.8
Zm00001eb414180 Zea mays HOM05D002763 ORTHO05D002972 3.6e-06 55.5 41 56.1
CAN.G333.12 Capsicum annuum HOM05D002763 ORTHO05D002972 4.7e-06 55.1 43 53.5
Manes.14G158000 Manihot esculenta HOM05D002763 ORTHO05D002972 4.7e-06 55.1 34 67.6
Rhsim01G0117300 Rhododendron simsii HOM05D002763 ORTHO05D002972 4.7e-06 55.1 78 39.7
Sabra08G0003000 Salix brachista HOM05D002763 ORTHO05D002972 4.7e-06 55.1 36 58.3
Aqoxy7G02792 Aquilegia oxysepala HOM05D002763 ORTHO05D002972 6.1e-06 54.7 104 31.7
FAN05G0930 Fragaria x ananassa HOM05D002763 ORTHO05D002972 6.1e-06 54.7 93 35.5
Gorai.013G243300 Gossypium raimondii HOM05D002763 ORTHO05D002972 6.1e-06 54.7 119 33.6
Zm00001eb178110 Zea mays HOM05D002763 ORTHO05D002972 6.1e-06 54.7 41 53.7
BcaB02g06672 Brassica carinata HOM05D002763 ORTHO05D002972 7.9e-06 54.3 108 32.4
CDE06G0951 Ceratophyllum demersum HOM05D002763 ORTHO05D002972 7.9e-06 54.3 44 45.5
Duzib160G0230 Durio zibethinus HOM05D002763 ORTHO05D002972 7.9e-06 54.3 83 33.7


User provided reference genes

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