Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G138900 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 2.7e-65 251.9 132 100.0
Phvul.003G139152 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 2.7e-65 251.9 132 100.0
Phvul.003G262000 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 7.1e-58 227.3 132 90.9
VMungo0464G1619 Vigna mungo HOM05D005499 ORTHO05D006666 1.0e-56 223.4 132 88.6
Glyma.19G077100 Glycine max HOM05D005499 ORTHO05D006666 5.6e-55 217.6 132 87.9
Glyma.05G073700 Glycine max HOM05D005499 ORTHO05D006666 1.3e-54 216.5 132 87.1
Lalb_Chr21g0317581 Lupinus albus HOM05D005499 ORTHO05D006666 3.7e-54 214.9 132 85.6
Lj6g0007933 Lotus japonicus HOM05D005499 ORTHO05D006666 6.2e-54 214.2 132 84.8
TPR.G3708 Trifolium pratense HOM05D005499 ORTHO05D006666 4.5e-52 208.0 132 81.8
Lalb_Chr02g0157891 Lupinus albus HOM05D005499 ORTHO05D006666 1.3e-51 206.5 132 84.1
Ca_25364_v3 Cicer arietinum L. HOM05D005499 ORTHO05D006666 3.8e-51 204.9 133 81.2
Psat1g031800 Pisum sativum HOM05D005499 ORTHO05D006666 3.8e-51 204.9 132 80.3
CiPaw.03G051000 Carya illinoinensis HOM05D005499 ORTHO05D006666 1.1e-50 203.4 132 78.8
Rhsim10G0010400 Rhododendron simsii HOM05D005499 ORTHO05D006666 5.1e-48 194.5 132 78.0
Psat7g172960 Pisum sativum HOM05D005499 ORTHO05D006666 6.7e-48 194.1 132 77.3
Haze_14820 Corylus avellana HOM05D005499 ORTHO05D006666 1.5e-47 193.0 132 75.0
TAR371G0544 Trochodendron aralioides HOM05D005499 ORTHO05D006666 1.5e-47 193.0 133 77.4
Medtr4g073700 Medicago truncatula HOM05D005499 ORTHO05D006666 4.3e-47 191.4 132 77.3
Dinv33378 Davidia involucrata HOM05D005499 ORTHO05D006666 5.6e-47 191.0 134 76.9
Medtr6g078300 Medicago truncatula HOM05D005499 ORTHO05D006666 5.6e-47 191.0 133 78.2
arahy.Tifrunner.gnm1.ann1.JB8R4I Arachis hypogaea HOM05D005499 ORTHO05D006666 1.3e-46 189.9 132 78.8
PSO478G5160 Papaver somniferum HOM05D005499 ORTHO05D006666 1.3e-46 189.9 133 77.4
arahy.Tifrunner.gnm1.ann1.C4BPDT Arachis hypogaea HOM05D005499 ORTHO05D006666 1.6e-46 189.5 132 78.0
Cpa.g.sc130.24 Carica papaya HOM05D005499 ORTHO05D006666 1.6e-46 189.5 134 76.9
TAR629G1334 Trochodendron aralioides HOM05D005499 ORTHO05D006666 3.7e-46 188.3 134 76.1
Cfa007270 Carpinus fangiana HOM05D005499 ORTHO05D006666 6.2e-46 187.6 132 72.7
CSS0020557 Camellia sinensis var. sinensis HOM05D005499 ORTHO05D006666 8.2e-46 187.2 134 74.6
Manes.15G156800 Manihot esculenta HOM05D005499 ORTHO05D006666 8.2e-46 187.2 134 76.9
Hma1.2p1_0279F.1_g112320 Hydrangea macrophylla HOM05D005499 ORTHO05D006666 1.4e-45 186.4 133 75.9
Atru.chr6.2492 Acer truncatum HOM05D005499 ORTHO05D006666 4.0e-45 184.9 134 73.1
MBI11_g21381_MAGBIO Magnolia biondii HOM05D005499 ORTHO05D006666 4.0e-45 184.9 134 73.9
Oeu003270.1 Olea europaea HOM05D005499 ORTHO05D006666 4.0e-45 184.9 133 73.7
PSO782G3924 Papaver somniferum HOM05D005499 ORTHO05D006666 5.3e-45 184.5 133 75.2
Potri.001G335600 Populus trichocarpa HOM05D005499 ORTHO05D006666 1.2e-44 183.3 132 73.5
QL02p072772 Quercus lobata HOM05D005499 ORTHO05D006666 2.0e-44 182.6 131 72.5
CANSAT11G2604 Cannabis sativa HOM05D005499 ORTHO05D006666 2.6e-44 182.2 132 72.7
DCAR_011296 Daucus carota HOM05D005499 ORTHO05D006666 2.6e-44 182.2 132 72.7
Gorai.012G089400 Gossypium raimondii HOM05D005499 ORTHO05D006666 2.6e-44 182.2 134 76.1
Eucgr.J02294 Eucalyptus grandis HOM05D005499 ORTHO05D006666 3.4e-44 181.8 134 71.6
Sabra16G0216600 Salix brachista HOM05D005499 ORTHO05D006666 3.4e-44 181.8 132 73.5
AUR62036750 Chenopodium quinoa HOM05D005499 ORTHO05D006666 5.8e-44 181.0 132 69.7
Duzib187G1007 Durio zibethinus HOM05D005499 ORTHO05D006666 1.3e-43 179.9 134 76.1
Thecc.04G028500 Theobroma cacao HOM05D005499 ORTHO05D006666 1.3e-43 179.9 133 75.2
Solyc11g010180.2 Solanum lycopersicum HOM05D005499 ORTHO05D006666 2.2e-43 179.1 132 71.2
Sopen11g004960 Solanum pennellii HOM05D005499 ORTHO05D006666 2.2e-43 179.1 132 71.2
Duzib264G0656 Durio zibethinus HOM05D005499 ORTHO05D006666 2.9e-43 178.7 134 75.4
Nn4g24319 Nelumbo nucifera HOM05D005499 ORTHO05D006666 2.9e-43 178.7 134 74.6
Prupe.6G125800 Prunus persica HOM05D005499 ORTHO05D006666 3.8e-43 178.3 134 71.6
Actinidia05936 Actinidia chinensis HOM05D005499 ORTHO05D006666 6.5e-43 177.6 132 75.0
COL.COLO4_29287 Corchorus olitorius HOM05D005499 ORTHO05D006666 6.5e-43 177.6 134 76.1
AUR62013851 Chenopodium quinoa HOM05D005499 ORTHO05D006666 8.4e-43 177.2 132 68.9
Aqoxy5G03538 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 2.5e-42 175.6 134 67.9
Thhalv10014999m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 2.5e-42 175.6 123 74.8
Gohir.D04G079400 Gossypium hirsutum HOM05D005499 ORTHO05D006666 2.5e-42 175.6 134 73.9
Ciclev10017154m.g Citrus clementina HOM05D005499 ORTHO05D006666 4.2e-42 174.9 134 72.4
Migut.K01440 Erythranthe guttata HOM05D005499 ORTHO05D006666 5.5e-42 174.5 132 70.5
HanXRQChr01g0030421 Helianthus annuus HOM05D005499 ORTHO05D006666 5.5e-42 174.5 133 74.4
CARHR199040 Cardamine hirsuta HOM05D005499 ORTHO05D006666 7.1e-42 174.1 120 76.7
Gohir.D10G084868 Gossypium hirsutum HOM05D005499 ORTHO05D006666 7.1e-42 174.1 134 73.1
Sc10g0004570 Simmondsia chinensis HOM05D005499 ORTHO05D006666 7.1e-42 174.1 133 69.9
TWI36G0940 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 7.1e-42 174.1 134 70.9
Gorai.011G092800 Gossypium raimondii HOM05D005499 ORTHO05D006666 1.6e-41 172.9 134 72.4
RcHm_v2.0_Chr3g0449841 Rosa chinensis HOM05D005499 ORTHO05D006666 1.6e-41 172.9 132 72.7
Nitab4.5_0012484g0010 Nicotiana tabacum HOM05D005499 ORTHO05D006666 2.7e-41 172.2 133 67.7
ECA238G0236 Erigeron canadensis HOM05D005499 ORTHO05D006666 3.5e-41 171.8 132 72.7
FAN05G4095 Fragaria x ananassa HOM05D005499 ORTHO05D006666 3.5e-41 171.8 136 71.3
PGSC0003DMG400016154 Solanum tuberosum HOM05D005499 ORTHO05D006666 3.5e-41 171.8 133 69.9
MSTRG.3267 Avicennia marina HOM05D005499 ORTHO05D006666 7.9e-41 170.6 124 75.8
FAN05G0237 Fragaria x ananassa HOM05D005499 ORTHO05D006666 7.9e-41 170.6 136 70.6
FAN05G2282 Fragaria x ananassa HOM05D005499 ORTHO05D006666 7.9e-41 170.6 136 70.6
FvH4_6g02050 Fragaria vesca HOM05D005499 ORTHO05D006666 1.0e-40 170.2 136 70.6
FAN05G1403 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.0e-40 170.2 136 70.6
FAN09G0379 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.0e-40 170.2 136 70.6
FAN14G4216 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.0e-40 170.2 136 70.6
Aqoxy3G01444 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 1.3e-40 169.9 135 71.1
Nitab4.5_0000743g0030 Nicotiana tabacum HOM05D005499 ORTHO05D006666 1.8e-40 169.5 133 66.9
ClCG04G001400 Citrullus lanatus HOM05D005499 ORTHO05D006666 2.3e-40 169.1 135 68.9
TWI56G1275 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 2.3e-40 169.1 128 71.9
FAN14G1883 Fragaria x ananassa HOM05D005499 ORTHO05D006666 3.9e-40 168.3 135 70.4
Sed0019428 Sechium edule HOM05D005499 ORTHO05D006666 3.9e-40 168.3 133 66.9
Ah.00g000560 Amaranthus hybridus HOM05D005499 ORTHO05D006666 5.1e-40 167.9 132 65.9
Gohir.A10G160300 Gossypium hirsutum HOM05D005499 ORTHO05D006666 6.7e-40 167.5 105 83.8
SalBow7G4317 Salvia bowleyana HOM05D005499 ORTHO05D006666 8.7e-40 167.2 132 68.9
PGSC0003DMG400023637 Solanum tuberosum HOM05D005499 ORTHO05D006666 1.5e-39 166.4 133 66.9
AL3G10400 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 1.9e-39 166.0 111 77.5
AT5G14290 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 1.9e-39 166.0 123 71.5
EL10Ac2g02820 Beta vulgaris HOM05D005499 ORTHO05D006666 1.9e-39 166.0 132 68.2
FAN14G2627 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.9e-39 166.0 135 69.6
Aa31LG5G10870 Aethionema arabicum HOM05D005499 ORTHO05D006666 3.3e-39 165.2 120 73.3
Cc10_g08070 Coffea canephora HOM05D005499 ORTHO05D006666 3.3e-39 165.2 134 71.6
Peaxi162Scf00016g00048 Petunia axillaris HOM05D005499 ORTHO05D006666 4.3e-39 164.9 127 68.5
Lsat_1_v5_gn_3_10761 Lactuca sativa HOM05D005499 ORTHO05D006666 9.7e-39 163.7 138 68.1
Carub.0003s0032 Capsella rubella HOM05D005499 ORTHO05D006666 2.8e-38 162.2 121 72.7
MELO3C008981.2 Cucumis melo HOM05D005499 ORTHO05D006666 2.8e-38 162.2 120 70.8
FvH4_4g13440 Fragaria vesca HOM05D005499 ORTHO05D006666 2.8e-38 162.2 136 69.1
FAN12G0501 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.8e-38 162.2 136 69.1
SGA_v2.0_scaffold47G17558 Striga asiatica HOM05D005499 ORTHO05D006666 3.7e-38 161.8 133 66.9
CsaV3_4G031040 Cucumis sativus L. HOM05D005499 ORTHO05D006666 2.4e-37 159.1 120 70.0
Hund13392 Selenicereus undatus HOM05D005499 ORTHO05D006666 2.4e-37 159.1 133 66.2
PSO782G2325 Papaver somniferum HOM05D005499 ORTHO05D006666 4.1e-37 158.3 120 71.7
CAN.G905.22 Capsicum annuum HOM05D005499 ORTHO05D006666 5.3e-37 157.9 132 65.2
A03p32370 Brassica napus HOM05D005499 ORTHO05D006666 2.0e-36 156.0 120 72.5
C03p39430 Brassica napus HOM05D005499 ORTHO05D006666 2.0e-36 156.0 120 72.5
BolC3t16211H Brassica oleracea HOM05D005499 ORTHO05D006666 2.0e-36 156.0 120 72.5
BraA03t12407Z Brassica rapa HOM05D005499 ORTHO05D006666 2.0e-36 156.0 120 72.5
Gohir.A05G341200 Gossypium hirsutum HOM05D005499 ORTHO05D006666 2.6e-36 155.6 132 66.7
unitig_32.g10669 Utricularia gibba HOM05D005499 ORTHO05D006666 3.4e-36 155.2 111 75.7
THA.LOC104822403 Tarenaya hassleriana HOM05D005499 ORTHO05D006666 7.6e-36 154.1 131 64.1
QL05p048106 Quercus lobata HOM05D005499 ORTHO05D006666 1.7e-35 152.9 102 77.5
HPP92_006243 Vanilla planifolia HOM05D005499 ORTHO05D006666 2.2e-35 152.5 129 65.1
AL6G24990 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 3.8e-35 151.8 100 78.0
CARHR075180 Cardamine hirsuta HOM05D005499 ORTHO05D006666 3.8e-35 151.8 92 82.6
Nitab4.5_0003764g0020 Nicotiana tabacum HOM05D005499 ORTHO05D006666 1.1e-34 150.2 133 60.2
AT3G01740 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 2.5e-34 149.1 121 66.9
Sp3g00320 Schrenkiella parvula HOM05D005499 ORTHO05D006666 7.9e-33 144.1 92 78.3
Thhalv10021760m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 3.0e-32 142.1 92 77.2
Cc07_g00480 Coffea canephora HOM05D005499 ORTHO05D006666 5.1e-32 141.4 134 61.9
ATR1098G108 Amborella trichopoda HOM05D005499 ORTHO05D006666 6.7e-32 141.0 98 77.6
CARHR105740 Cardamine hirsuta HOM05D005499 ORTHO05D006666 1.1e-31 140.2 112 67.9
Os12g0244200 Oryza sativa ssp. japonica HOM05D005499 ORTHO05D006666 1.1e-31 140.2 133 60.9
Nn1g08773 Nelumbo nucifera HOM05D005499 ORTHO05D006666 1.3e-30 136.7 120 66.7
Zm00001eb328460 Zea mays HOM05D005499 ORTHO05D006666 1.7e-30 136.3 133 57.1
SHI11403 Sapria himalayana HOM05D005499 ORTHO05D006666 4.8e-30 134.8 105 65.7
FAN21G0236 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.5e-28 129.8 123 60.2
Sed0018883 Sechium edule HOM05D005499 ORTHO05D006666 3.8e-27 125.2 91 71.4
SEGI_30393 Sequoiadendron giganteum HOM05D005499 ORTHO05D006666 7.9e-25 117.5 117 56.4
Gohir.1Z049635 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.3e-22 110.2 93 67.7
FAN02G3728 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.4e-18 96.7 82 62.2
Pp3c26_11040 Physcomitrium patens HOM05D005499 ORTHO05D006666 5.5e-18 94.7 92 53.3
Mapoly0005s0032 Marchantia polymorpha HOM05D005499 ORTHO05D006666 4.7e-17 91.7 116 49.1
CBR_g38683 Chara braunii HOM05D005499 ORTHO05D006666 1.8e-16 89.7 115 48.7
SMO164G0004 Selaginella moellendorffii HOM05D005499 ORTHO05D006666 3.0e-16 89.0 105 48.6
AagrBONN_evm.TU.Sc2ySwM_362.2497 Anthoceros agrestis HOM05D005499 ORTHO05D006666 1.1e-15 87.0 90 50.0
Dinv24762 Davidia involucrata HOM05D003270 ORTHO05D003662 6.3e-14 81.3 69 68.1
CARHR266370 Cardamine hirsuta HOM05D005499 ORTHO05D006666 1.1e-13 80.5 52 75.0
TAR374G0914 Trochodendron aralioides HOM05D005499 ORTHO05D006666 2.9e-11 72.4 62 64.5
Actinidia36173 Actinidia chinensis HOM05D005499 ORTHO05D006666 2.1e-09 66.2 80 57.5
Dinv25304 Davidia involucrata HOM05D000009 ORTHO05D000008 8.8e-08 60.8 54 66.7
Cre12.g546000 Chlamydomonas reinhardtii HOM05D005499 ORTHO05D006666 1.5e-07 60.1 99 38.4
MCO16G647 Micromonas commoda HOM05D005499 ORTHO05D006666 2.8e-06 55.8 129 33.3


User provided reference genes

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