Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G137400 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 2.0e-55 218.8 102 100.0
VMungo1215G3302 Vigna mungo HOM05D002570 ORTHO05D002689 4.8e-38 161.0 86 84.9
Lj4g0013925 Lotus japonicus HOM05D002570 ORTHO05D002689 2.8e-25 118.6 84 64.3
Glyma.17G055600 Glycine max HOM05D002570 ORTHO05D002689 6.1e-25 117.5 85 65.9
Glyma.13G103400 Glycine max HOM05D002570 ORTHO05D002689 5.2e-24 114.4 85 68.2
arahy.Tifrunner.gnm1.ann1.G00P8D Arachis hypogaea HOM05D002570 ORTHO05D002689 3.7e-22 108.2 84 63.1
arahy.Tifrunner.gnm1.ann1.ANT7GU Arachis hypogaea HOM05D002570 ORTHO05D002689 2.7e-20 102.1 84 59.5
Lalb_Chr12g0199761 Lupinus albus HOM05D002570 ORTHO05D002689 1.0e-19 100.1 92 55.4
Psat4g014680 Pisum sativum HOM05D002570 ORTHO05D002689 5.6e-18 94.4 94 48.9
Medtr4g126400 Medicago truncatula HOM05D002570 ORTHO05D002689 1.0e-16 90.1 91 48.4
TPR.G27566 Trifolium pratense HOM05D002570 ORTHO05D002689 4.0e-16 88.2 80 52.5
Sabra06G0052300 Salix brachista HOM05D002570 ORTHO05D002689 8.9e-16 87.0 84 50.0
Potri.006G070200 Populus trichocarpa HOM05D002570 ORTHO05D002689 3.4e-15 85.1 68 55.9
Dinv25488 Davidia involucrata HOM05D002570 ORTHO05D002689 1.1e-13 80.1 72 58.3
Cfa013397 Carpinus fangiana HOM05D002570 ORTHO05D002689 9.2e-13 77.0 77 53.2
Ciclev10010203m.g Citrus clementina HOM05D002570 ORTHO05D002689 9.2e-13 77.0 89 41.6
Potri.018G131900 Populus trichocarpa HOM05D002570 ORTHO05D002689 3.0e-11 72.0 68 54.4
FvH4_4g06680 Fragaria vesca HOM05D030384 ORTHO05D002689 3.9e-11 71.6 76 50.0
FAN12G3444 Fragaria x ananassa HOM05D030384 ORTHO05D002689 3.9e-11 71.6 76 50.0
Gohir.A12G155900 Gossypium hirsutum HOM05D002570 ORTHO05D002689 5.0e-11 71.2 84 40.5
FAN22G1225 Fragaria x ananassa HOM05D002570 ORTHO05D002689 8.6e-11 70.5 72 52.8
Gohir.D12G159000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 2.5e-10 68.9 84 40.5
Gorai.008G172100 Gossypium raimondii HOM05D002570 ORTHO05D002689 2.5e-10 68.9 84 40.5
Duzib251G0386 Durio zibethinus HOM05D002570 ORTHO05D002689 7.3e-10 67.4 84 41.7
vmacro19088 Vaccinium macrocarpon HOM05D002570 ORTHO05D002689 7.3e-10 67.4 76 43.4
Rhsim08G0200900 Rhododendron simsii HOM05D002570 ORTHO05D002689 2.1e-09 65.9 76 42.1
Thecc.02G311400 Theobroma cacao HOM05D002570 ORTHO05D002689 2.1e-09 65.9 72 45.8
Hma1.2p1_1208F.1_g267175 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 2.8e-09 65.5 76 42.1
Prupe.1G069600 Prunus persica HOM05D002570 ORTHO05D002689 3.6e-09 65.1 79 45.6
Actinidia25496 Actinidia chinensis HOM05D002570 ORTHO05D002689 4.7e-09 64.7 80 42.5
Cc04_g05480 Coffea canephora HOM05D002570 ORTHO05D002689 4.7e-09 64.7 73 43.8
TWI60G0727 Tripterygium wilfordii HOM05D002570 ORTHO05D002689 4.7e-09 64.7 69 44.9
CSS0011601 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 1.1e-08 63.5 76 40.8
CSS0038527 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 1.1e-08 63.5 76 40.8
Actinidia08926 Actinidia chinensis HOM05D002570 ORTHO05D002689 1.4e-08 63.2 76 40.8
Thecc.06G132900 Theobroma cacao HOM05D002570 ORTHO05D002689 1.8e-08 62.8 76 42.1
MSTRG.11212 Avicennia marina HOM05D002570 ORTHO05D002689 3.1e-08 62.0 73 41.1
MSTRG.22832 Avicennia marina HOM05D002570 ORTHO05D002689 3.1e-08 62.0 73 41.1
Dinv13685 Davidia involucrata HOM05D002570 ORTHO05D002689 4.0e-08 61.6 76 40.8
Dinv21443 Davidia involucrata HOM05D002570 ORTHO05D002689 4.0e-08 61.6 76 40.8
COL.COLO4_30895 Corchorus olitorius HOM05D002570 ORTHO05D002689 6.8e-08 60.8 76 40.8
SalBow1G2645 Salvia bowleyana HOM05D002570 ORTHO05D002689 6.8e-08 60.8 73 41.1
Migut.D01154 Erythranthe guttata HOM05D002570 ORTHO05D002689 8.9e-08 60.5 73 41.1
Actinidia18273 Actinidia chinensis HOM05D002570 ORTHO05D002689 1.5e-07 59.7 76 39.5
Gohir.A05G143000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 2.0e-07 59.3 76 39.5
Gohir.D05G145400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 2.0e-07 59.3 76 39.5
Gorai.009G149300 Gossypium raimondii HOM05D002570 ORTHO05D002689 2.0e-07 59.3 76 39.5
Solyc03g117840.4 Solanum lycopersicum HOM05D002570 ORTHO05D002689 2.0e-07 59.3 71 40.8
PGSC0003DMG400014220 Solanum tuberosum HOM05D002570 ORTHO05D002689 2.0e-07 59.3 71 40.8
MBI14_g19442_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 2.6e-07 58.9 73 41.1
Sopen03g036750 Solanum pennellii HOM05D002570 ORTHO05D002689 2.6e-07 58.9 71 40.8
CAN.G1008.23 Capsicum annuum HOM05D002570 ORTHO05D002689 3.4e-07 58.5 71 40.8
Nitab4.5_0004194g0090 Nicotiana tabacum HOM05D002570 ORTHO05D002689 3.4e-07 58.5 87 35.6
Nitab4.5_0007293g0020 Nicotiana tabacum HOM05D002570 ORTHO05D002689 3.4e-07 58.5 87 35.6
Prupe.3G106900 Prunus persica HOM05D002570 ORTHO05D002689 4.4e-07 58.2 74 40.5
PGR102G1262 Punica granatum HOM05D002570 ORTHO05D002689 4.4e-07 58.2 76 39.5
Oeu033446.1 Olea europaea HOM05D002570 ORTHO05D002689 5.8e-07 57.8 73 38.4
Oeu036442.1 Olea europaea HOM05D002570 ORTHO05D002689 5.8e-07 57.8 75 38.7
Haze_15246 Corylus avellana HOM05D002570 ORTHO05D002689 7.5e-07 57.4 76 42.1
Dinv23257 Davidia involucrata HOM05D002570 ORTHO05D002689 9.8e-07 57.0 76 36.8
Duzib192G0671 Durio zibethinus HOM05D002570 ORTHO05D002689 1.3e-06 56.6 76 42.1
Manes.11G071400 Manihot esculenta HOM05D002570 ORTHO05D002689 1.3e-06 56.6 76 38.2
Nn1g04609 Nelumbo nucifera HOM05D002570 ORTHO05D002689 1.3e-06 56.6 74 41.9
Peaxi162Scf00314g00938 Petunia axillaris HOM05D002570 ORTHO05D002689 1.3e-06 56.6 87 35.6
TAR383G0799 Trochodendron aralioides HOM05D002570 ORTHO05D002689 1.3e-06 56.6 76 38.2
CsaV3_3G032640 Cucumis sativus L. HOM05D002570 ORTHO05D002689 1.7e-06 56.2 88 36.4
FAN05G0139 Fragaria x ananassa HOM05D002570 ORTHO05D002689 1.7e-06 56.2 87 35.6
FAN05G5383 Fragaria x ananassa HOM05D002570 ORTHO05D002689 1.7e-06 56.2 87 35.6
ClCG09G003530 Citrullus lanatus HOM05D002570 ORTHO05D002689 2.2e-06 55.8 76 39.5
CsaV3_7G031670 Cucumis sativus L. HOM05D002570 ORTHO05D002689 2.2e-06 55.8 76 39.5
FAN17G2389 Fragaria x ananassa HOM05D030384 ORTHO05D002689 2.2e-06 55.8 46 56.5
Nn8g40408 Nelumbo nucifera HOM05D002570 ORTHO05D002689 2.9e-06 55.5 76 36.8
QL05p081283 Quercus lobata HOM05D002570 ORTHO05D002689 2.9e-06 55.5 76 39.5
Sed0010699 Sechium edule HOM05D002570 ORTHO05D002689 2.9e-06 55.5 86 34.9
Atru.chr1.2751 Acer truncatum HOM05D002570 ORTHO05D002689 3.7e-06 55.1 76 38.2
Migut.I00642 Erythranthe guttata HOM05D002570 ORTHO05D002689 3.7e-06 55.1 73 37.0
MBI16_g27293_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 3.7e-06 55.1 76 36.8
Sed0009460 Sechium edule HOM05D002570 ORTHO05D002689 3.7e-06 55.1 76 39.5
MELO3C023490.2 Cucumis melo HOM05D002570 ORTHO05D002689 4.9e-06 54.7 76 38.2
MD09G1230400 Malus domestica HOM05D002570 ORTHO05D002689 4.9e-06 54.7 74 39.2
Oeu012866.1 Olea europaea HOM05D002570 ORTHO05D002689 4.9e-06 54.7 73 37.0
Phvul.005G184200 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 4.9e-06 54.7 63 42.9
ClCG10G012800 Citrullus lanatus HOM05D002570 ORTHO05D002689 6.4e-06 54.3 89 36.0
Hma1.2p1_0235F.1_g098980 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 6.4e-06 54.3 51 56.9
Lsat_1_v5_gn_1_30640 Lactuca sativa HOM05D002570 ORTHO05D002689 6.4e-06 54.3 74 37.8
CiPaw.01G051100 Carya illinoinensis HOM05D002570 ORTHO05D002689 8.3e-06 53.9 76 39.5
FvH4_6g28000 Fragaria vesca HOM05D002570 ORTHO05D002689 8.3e-06 53.9 74 37.8
FAN02G4288 Fragaria x ananassa HOM05D002570 ORTHO05D002689 8.3e-06 53.9 74 37.8
FAN14G4539 Fragaria x ananassa HOM05D002570 ORTHO05D002689 8.3e-06 53.9 74 37.8
Gohir.A10G049400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 8.3e-06 53.9 76 36.8
Gohir.D10G050000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 8.3e-06 53.9 76 36.8
Gorai.011G053600 Gossypium raimondii HOM05D002570 ORTHO05D002689 8.3e-06 53.9 76 36.8
RcHm_v2.0_Chr2g0131671 Rosa chinensis HOM05D002570 ORTHO05D002689 8.3e-06 53.9 74 37.8


User provided reference genes

Program Settings