Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G131000 Phaseolus vulgaris HOM05D008087 ORTHO05D010187 8.0e-104 380.6 209 100.0
VMungo1215G2436 Vigna mungo HOM05D008087 ORTHO05D010187 3.2e-97 358.6 209 93.8
Glyma.13G110250 Glycine max HOM05D008087 ORTHO05D010187 4.4e-94 348.2 208 89.9
Glyma.17G049450 Glycine max HOM05D008087 ORTHO05D010187 8.5e-90 334.0 208 87.5
Lj4g0020355 Lotus japonicus HOM05D008087 ORTHO05D010187 1.1e-84 317.0 209 82.3
Ciclev10009482m.g Citrus clementina HOM05D008087 ORTHO05D010187 5.5e-81 304.7 207 77.3
arahy.Tifrunner.gnm1.ann1.TB6UZQ Arachis hypogaea HOM05D008087 ORTHO05D010187 3.6e-80 302.0 209 77.0
Cfa002992 Carpinus fangiana HOM05D008087 ORTHO05D010187 6.1e-80 301.2 207 79.2
QL11p000704 Quercus lobata HOM05D008087 ORTHO05D010187 1.0e-79 300.4 207 78.3
Lalb_Chr07g0181171 Lupinus albus HOM05D008087 ORTHO05D010187 2.3e-79 299.3 209 77.5
Psat4g017680 Pisum sativum HOM05D008087 ORTHO05D010187 8.3e-77 290.8 211 77.3
Thecc.09G077500 Theobroma cacao HOM05D008087 ORTHO05D010187 4.1e-76 288.5 207 75.4
Sabra18G0058300 Salix brachista HOM05D008087 ORTHO05D010187 5.4e-76 288.1 209 75.1
TWI34G0776 Tripterygium wilfordii HOM05D008087 ORTHO05D010187 1.2e-75 287.0 207 72.0
Manes.16G095600 Manihot esculenta HOM05D008087 ORTHO05D010187 2.7e-75 285.8 207 74.4
Prupe.7G199300 Prunus persica HOM05D008087 ORTHO05D010187 2.7e-75 285.8 210 74.3
CSS0002060 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 4.5e-75 285.0 207 75.4
Gorai.010G088200 Gossypium raimondii HOM05D008087 ORTHO05D010187 2.3e-74 282.7 207 74.4
Gohir.D06G075300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 2.9e-74 282.3 207 74.4
MD15G1217200 Malus domestica HOM05D008087 ORTHO05D010187 2.9e-74 282.3 210 71.9
Potri.018G065700 Populus trichocarpa HOM05D008087 ORTHO05D010187 2.9e-74 282.3 209 74.2
COL.COLO4_18101 Corchorus olitorius HOM05D008087 ORTHO05D010187 5.0e-74 281.6 207 73.9
Nitab4.5_0002966g0020 Nicotiana tabacum HOM05D008087 ORTHO05D010187 5.0e-74 281.6 207 74.4
CSS0037579 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 1.5e-73 280.0 207 74.4
CiPaw.03G206800 Carya illinoinensis HOM05D008087 ORTHO05D010187 1.5e-73 280.0 208 74.0
Gohir.A06G076300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 2.5e-73 279.3 207 73.9
TPR.G12579 Trifolium pratense HOM05D008087 ORTHO05D010187 3.3e-73 278.9 209 73.7
TAR383G0588 Trochodendron aralioides HOM05D008087 ORTHO05D010187 3.3e-73 278.9 207 73.4
Hma1.2p1_0179F.1_g079550 Hydrangea macrophylla HOM05D008087 ORTHO05D010187 1.2e-72 276.9 207 72.9
Duzib168G2281 Durio zibethinus HOM05D008087 ORTHO05D010187 1.6e-72 276.6 207 73.9
Lj4P912T21 Lonicera japonica HOM05D008087 ORTHO05D010187 8.9e-71 270.8 208 70.2
Cpa.g.sc28.44 Carica papaya HOM05D008087 ORTHO05D010187 9.8e-70 267.3 208 70.2
RcHm_v2.0_Chr2g0094891 Rosa chinensis HOM05D008087 ORTHO05D010187 9.8e-70 267.3 209 71.3
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 1.3e-69 266.9 200 72.5
CANSAT56G3514 Cannabis sativa HOM05D008087 ORTHO05D010187 2.2e-69 266.2 210 70.5
DCAR_024749 Daucus carota HOM05D008087 ORTHO05D010187 2.2e-69 266.2 204 70.1
MSTRG.19463 Avicennia marina HOM05D008087 ORTHO05D010187 6.4e-69 264.6 203 70.4
Eucgr.C03187 Eucalyptus grandis HOM05D008087 ORTHO05D010187 1.1e-68 263.8 207 68.1
Oeu049121.1 Olea europaea HOM05D008087 ORTHO05D010187 3.2e-68 262.3 205 68.8
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 5.4e-68 261.5 180 76.7
Medtr4g125370 Medicago truncatula HOM05D008087 ORTHO05D010187 2.0e-67 259.6 209 71.8
Rhsim05G0007800 Rhododendron simsii HOM05D008087 ORTHO05D010187 7.8e-67 257.7 207 69.6
PGSC0003DMG400013001 Solanum tuberosum HOM05D008087 ORTHO05D010187 1.0e-66 257.3 207 66.7
Solyc07g041770.1 Solanum lycopersicum HOM05D008087 ORTHO05D010187 1.7e-66 256.5 207 66.2
Cc06_g12130 Coffea canephora HOM05D008087 ORTHO05D010187 6.6e-66 254.6 207 67.1
Nn8g38653 Nelumbo nucifera HOM05D008087 ORTHO05D010187 6.6e-66 254.6 207 69.1
SalBow6G2426 Salvia bowleyana HOM05D008087 ORTHO05D010187 7.3e-65 251.1 205 66.3
Sopen07g021260 Solanum pennellii HOM05D008087 ORTHO05D010187 1.6e-64 250.0 207 65.2
Ca_21320_v3 Cicer arietinum L. HOM05D008087 ORTHO05D010187 4.4e-62 241.9 208 67.8
AUR62028937 Chenopodium quinoa HOM05D008087 ORTHO05D010187 8.3e-61 237.7 208 64.4
PSO135G0253 Papaver somniferum HOM05D008087 ORTHO05D010187 3.2e-60 235.7 206 62.6
Aqoxy1G01322 Aquilegia oxysepala HOM05D008087 ORTHO05D010187 7.0e-60 234.6 205 63.4
Migut.J00928 Erythranthe guttata HOM05D008087 ORTHO05D010187 7.0e-60 234.6 198 66.7
MBI19_g11825_MAGBIO Magnolia biondii HOM05D008087 ORTHO05D010187 1.0e-58 230.7 207 59.9
PGR044G2582 Punica granatum HOM05D008087 ORTHO05D010187 1.0e-58 230.7 207 64.7
Duzib187G0811 Durio zibethinus HOM05D008087 ORTHO05D010187 9.5e-57 224.2 159 74.2
CSS0034066 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 3.6e-56 222.2 168 72.6
Sc08g0008880 Simmondsia chinensis HOM05D008087 ORTHO05D010187 8.9e-55 217.6 207 60.9
Eucgr.L02787 Eucalyptus grandis HOM05D008087 ORTHO05D010187 9.9e-54 214.2 207 59.4
Ah.09g231600 Amaranthus hybridus HOM05D008087 ORTHO05D010187 2.0e-46 189.9 184 57.1
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 1.7e-42 176.8 195 58.5
AT3G42725 Arabidopsis thaliana HOM05D008087 ORTHO05D010187 6.9e-39 164.9 201 48.3
AL5G20930 Arabidopsis lyrata HOM05D008087 ORTHO05D010187 1.5e-38 163.7 202 47.5
Peaxi162Scf00127g00202 Petunia axillaris HOM05D008087 ORTHO05D010187 3.0e-34 149.4 104 73.1
Nitab4.5_0000343g0200 Nicotiana tabacum HOM05D008087 ORTHO05D010187 5.1e-34 148.7 104 73.1
THA.LOC104811009 Tarenaya hassleriana HOM05D008087 ORTHO05D010187 5.6e-33 145.2 207 43.5
PGR044G2297 Punica granatum HOM05D008087 ORTHO05D010187 1.3e-26 124.0 127 55.9
PSO724G0984 Papaver somniferum HOM05D008087 ORTHO05D010187 4.8e-24 115.5 104 60.6
Zm00001eb005810 Zea mays HOM05D008087 ORTHO05D010187 1.1e-23 114.4 207 40.1
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 1.8e-18 97.1 101 52.5
Ah.14g084950 Amaranthus hybridus HOM05D008087 ORTHO05D010187 2.3e-18 96.7 110 52.7
MD15G1091800 Malus domestica HOM05D008087 ORTHO05D010187 1.3e-16 90.9 81 59.3
ATR0598G047 Amborella trichopoda HOM05D008087 ORTHO05D010187 6.2e-16 88.6 114 40.4
HPP92_026302 Vanilla planifolia HOM05D008087 ORTHO05D010187 2.0e-14 83.6 201 33.3
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 1.4e-12 77.4 54 68.5
Ciclev10030215m.g Citrus clementina HOM05D008087 ORTHO05D010187 2.7e-11 73.2 165 38.8
SMO358G0701 Selaginella moellendorffii HOM05D016812 ORTHO05D010187 1.8e-10 70.5 187 31.6
Mapoly0038s0092 Marchantia polymorpha HOM05D016812 ORTHO05D010187 2.4e-07 60.1 187 29.4
Aa31LG4G13290 Aethionema arabicum HOM05D008087 ORTHO05D010187 4.1e-07 59.3 119 41.2


User provided reference genes

Program Settings