Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 2.3e-110 402.1 188 100.0
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 4.1e-107 391.3 191 96.9
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 2.9e-105 385.2 187 96.3
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 5.0e-105 384.4 188 95.2
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 7.9e-103 377.1 185 91.9
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 2.9e-97 358.6 187 87.7
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 1.4e-94 349.7 185 84.3
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 5.1e-94 347.8 183 84.2
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 8.8e-94 347.1 185 84.9
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 1.5e-93 346.3 187 83.4
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 4.4e-93 344.7 185 83.8
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 4.4e-93 344.7 186 82.8
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 3.7e-92 341.7 187 82.9
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 3.7e-92 341.7 184 83.2
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 6.3e-92 340.9 184 84.2
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 1.8e-91 339.3 184 81.5
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 5.3e-91 337.8 184 81.0
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 1.5e-90 336.3 183 81.4
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 1.3e-89 333.2 201 76.1
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 2.2e-89 332.4 184 81.5
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 2.2e-89 332.4 184 81.5
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 3.8e-89 331.6 187 78.6
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 6.5e-89 330.9 188 78.7
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 1.4e-88 329.7 183 80.9
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 1.4e-88 329.7 184 78.3
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 1.9e-88 329.3 188 78.2
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 2.5e-88 328.9 188 78.2
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 3.2e-88 328.6 187 80.7
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 9.4e-88 327.0 188 77.7
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 2.1e-87 325.9 185 77.8
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 2.7e-87 325.5 187 79.1
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 3.6e-87 325.1 188 77.7
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 6.1e-87 324.3 178 81.5
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 6.1e-87 324.3 178 81.5
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 6.1e-87 324.3 188 77.1
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 7.9e-87 323.9 187 78.6
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 7.9e-87 323.9 181 79.0
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 7.9e-87 323.9 185 77.8
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.0e-86 323.6 183 78.1
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 1.0e-86 323.6 180 80.0
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 1.4e-86 323.2 185 77.8
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 1.4e-86 323.2 185 77.8
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 1.8e-86 322.8 178 80.9
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 1.8e-86 322.8 178 80.9
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 1.8e-86 322.8 178 80.3
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 1.8e-86 322.8 182 78.6
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 1.8e-86 322.8 186 78.5
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 1.8e-86 322.8 188 77.1
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.3e-86 322.4 188 76.1
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 3.0e-86 322.0 184 78.8
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 5.2e-86 321.2 178 80.3
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 5.2e-86 321.2 182 78.6
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 8.8e-86 320.5 178 79.8
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 8.8e-86 320.5 178 79.2
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 1.1e-85 320.1 178 79.2
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 1.5e-85 319.7 180 80.0
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 4.4e-85 318.2 178 79.2
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 4.4e-85 318.2 185 79.5
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 4.4e-85 318.2 185 79.5
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 4.4e-85 318.2 182 77.5
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 5.7e-85 317.8 178 78.1
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 5.7e-85 317.8 180 79.4
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 5.7e-85 317.8 179 77.1
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 7.4e-85 317.4 184 77.2
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 7.4e-85 317.4 177 79.1
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 7.4e-85 317.4 181 77.9
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 9.7e-85 317.0 181 79.0
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 1.3e-84 316.6 181 76.8
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 1.3e-84 316.6 178 79.8
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 1.7e-84 316.2 180 78.3
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 2.2e-84 315.8 176 80.7
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 2.2e-84 315.8 200 73.5
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 4.8e-84 314.7 183 75.4
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 4.8e-84 314.7 182 80.2
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 1.8e-83 312.8 182 78.0
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 1.8e-83 312.8 182 78.0
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.1e-83 312.0 185 73.5
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 4.1e-83 311.6 178 79.2
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 1.6e-82 309.7 179 77.7
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 1.6e-82 309.7 180 76.1
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 1.6e-82 309.7 181 75.1
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 3.5e-82 308.5 183 74.9
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 4.5e-82 308.1 185 74.1
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.0e-81 307.0 180 75.6
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 1.0e-81 307.0 197 71.6
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 1.3e-81 306.6 187 78.1
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 2.2e-81 305.8 215 67.4
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 8.5e-81 303.9 177 72.9
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 1.5e-80 303.1 187 78.1
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 1.0e-78 297.0 168 78.6
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 2.3e-78 295.8 201 67.7
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 3.0e-78 295.4 155 83.2
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 3.0e-78 295.4 184 71.7
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 3.0e-78 295.4 184 71.7
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 2.2e-76 289.3 222 61.7
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 2.2e-76 289.3 158 79.7
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 2.8e-76 288.9 184 70.1
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 2.8e-76 288.9 222 61.3
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 1.1e-75 287.0 183 71.6
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 1.4e-75 286.6 179 70.9
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 3.1e-75 285.4 154 81.2
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.1e-75 285.0 167 76.0
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 4.1e-75 285.0 154 81.2
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 5.3e-75 284.6 186 70.4
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 5.9e-74 281.2 164 78.7
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 3.8e-73 278.5 178 70.2
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 3.8e-73 278.5 178 70.2
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 6.5e-73 277.7 199 66.3
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 5.5e-72 274.6 184 66.8
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 7.2e-72 274.2 140 84.3
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 1.4e-70 270.0 149 77.2
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 6.8e-70 267.7 151 77.5
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 8.8e-70 267.3 171 72.5
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 1.2e-69 266.9 207 60.9
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 2.0e-69 266.2 149 76.5
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 2.6e-69 265.8 281 51.6
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 2.7e-66 255.8 146 76.7
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 2.5e-64 249.2 182 62.6
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 5.2e-62 241.5 170 66.5
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 4.3e-56 221.9 182 59.3
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 1.2e-55 220.3 194 59.3
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 2.8e-55 219.2 178 56.2
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 4.7e-55 218.4 182 59.3
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.3e-54 216.1 121 77.7
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 5.2e-54 214.9 177 53.7
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 1.6e-47 193.4 200 51.0
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 4.4e-45 185.3 173 45.7
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 4.4e-45 185.3 173 45.7
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 5.8e-45 184.9 184 56.0
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 4.9e-44 181.8 121 66.9
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 3.2e-43 179.1 91 86.8
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 4.1e-43 178.7 190 46.3
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.3e-40 168.7 93 79.6
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.1e-39 166.4 146 55.5
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 6.2e-39 164.9 178 41.6
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 1.4e-38 163.7 208 38.9
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 4.0e-38 162.2 180 40.0
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 5.2e-38 161.8 162 46.9
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.1e-35 154.1 152 52.6
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 1.7e-33 146.7 142 43.0
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 6.6e-33 144.8 92 65.2
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 3.4e-29 132.5 90 66.7
Thecc.09G077100 Theobroma cacao HOM05D001119 ORTHO05D000862 1.7e-12 77.0 44 77.3
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 8.4e-12 74.7 46 69.6
Nn6g32302 Nelumbo nucifera HOM05D002335 ORTHO05D006692 7.4e-08 61.6 43 67.4
Medtr4g125350 Medicago truncatula HOM05D001119 ORTHO05D000862 6.9e-06 55.1 29 89.7


User provided reference genes

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