Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 3.3e-68 261.5 129 100.0
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 9.7e-68 260.0 129 98.4
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 1.0e-64 250.0 129 93.8
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 4.2e-63 244.6 129 91.5
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 5.5e-63 244.2 129 92.2
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 4.4e-60 234.6 127 87.4
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 2.2e-59 232.3 129 86.8
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 2.4e-58 228.8 127 85.8
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 2.4e-58 228.8 127 85.8
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 5.3e-58 227.6 129 85.3
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 4.5e-57 224.6 127 81.9
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 2.2e-56 222.2 128 80.5
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 2.2e-56 222.2 124 84.7
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 5.0e-56 221.1 127 82.7
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 6.5e-56 220.7 124 83.9
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 8.5e-56 220.3 125 82.4
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 8.5e-56 220.3 127 81.1
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 8.5e-56 220.3 127 81.1
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 8.5e-56 220.3 127 83.5
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 1.1e-55 219.9 127 81.1
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 1.4e-55 219.5 128 82.0
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 1.4e-55 219.5 127 81.9
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 3.2e-55 218.4 127 82.7
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 9.4e-55 216.9 124 80.6
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 1.2e-54 216.5 127 81.1
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 1.6e-54 216.1 125 83.2
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 1.6e-54 216.1 127 81.1
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 2.1e-54 215.7 127 79.5
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 2.1e-54 215.7 124 79.8
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 2.1e-54 215.7 125 81.6
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 2.1e-54 215.7 127 80.3
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 3.6e-54 214.9 127 81.1
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 3.6e-54 214.9 127 77.2
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 4.7e-54 214.5 124 79.8
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 6.1e-54 214.2 125 81.6
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 7.9e-54 213.8 127 78.7
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 7.9e-54 213.8 122 81.1
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 1.0e-53 213.4 127 78.7
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.0e-53 213.4 127 78.0
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 1.0e-53 213.4 127 79.5
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 1.4e-53 213.0 127 78.7
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 1.4e-53 213.0 127 79.5
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.4e-53 213.0 127 79.5
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 1.4e-53 213.0 127 78.7
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 3.9e-53 211.5 124 79.8
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.9e-53 211.5 127 78.7
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.9e-53 211.5 127 78.7
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 3.9e-53 211.5 127 77.2
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 3.9e-53 211.5 127 77.2
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 5.2e-53 211.1 124 79.8
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 5.2e-53 211.1 127 78.7
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 5.2e-53 211.1 127 77.2
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 6.7e-53 210.7 125 80.0
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 8.8e-53 210.3 127 78.7
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 8.8e-53 210.3 127 76.4
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 1.1e-52 209.9 130 79.2
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 1.5e-52 209.5 128 78.1
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 4.4e-52 208.0 127 77.2
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 5.7e-52 207.6 127 76.4
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 5.7e-52 207.6 127 78.0
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 5.7e-52 207.6 124 78.2
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 7.4e-52 207.2 127 76.4
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 7.4e-52 207.2 124 78.2
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 7.4e-52 207.2 124 79.0
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 9.7e-52 206.8 127 77.2
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 9.7e-52 206.8 133 73.7
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.7e-51 206.1 127 75.6
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 1.7e-51 206.1 124 75.8
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 1.7e-51 206.1 124 75.8
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 2.2e-51 205.7 127 76.4
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 2.2e-51 205.7 127 76.4
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 2.2e-51 205.7 127 74.0
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 2.8e-51 205.3 127 76.4
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 3.7e-51 204.9 127 76.4
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 3.7e-51 204.9 127 74.0
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 4.8e-51 204.5 128 77.3
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 6.3e-51 204.1 127 76.4
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 6.3e-51 204.1 127 76.4
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 6.3e-51 204.1 127 76.4
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 6.3e-51 204.1 118 78.8
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 8.2e-51 203.8 118 78.8
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 1.1e-50 203.4 127 77.2
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 1.1e-50 203.4 127 76.4
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 1.4e-50 203.0 127 75.6
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 1.4e-50 203.0 127 75.6
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 1.4e-50 203.0 124 74.2
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.4e-50 203.0 124 75.8
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.8e-50 202.6 127 76.4
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 1.8e-50 202.6 127 75.6
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 1.8e-50 202.6 127 75.6
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 4.1e-50 201.4 128 75.8
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 4.1e-50 201.4 128 77.3
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 7.0e-50 200.7 124 74.2
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 7.0e-50 200.7 124 76.6
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 1.6e-49 199.5 128 75.8
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 2.0e-49 199.1 127 75.6
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 2.0e-49 199.1 127 74.8
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 2.0e-49 199.1 124 75.8
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 2.6e-49 198.7 128 75.0
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 2.6e-49 198.7 128 74.2
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 3.5e-49 198.4 127 72.4
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 3.5e-49 198.4 128 74.2
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 7.7e-49 197.2 124 73.4
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 7.7e-49 197.2 124 72.6
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 2.2e-48 195.7 125 73.6
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 5.0e-48 194.5 124 71.8
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 5.0e-48 194.5 127 74.8
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 2.7e-46 188.7 124 70.2
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 4.7e-46 188.0 125 77.6
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 5.2e-45 184.5 109 76.1
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 2.2e-43 179.1 106 79.2
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 3.7e-43 178.3 171 55.6
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 2.0e-41 172.6 108 75.9
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 1.9e-39 166.0 96 78.1
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 8.8e-37 157.1 103 75.7
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 2.2e-35 152.5 87 83.9
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 1.6e-33 146.4 82 80.5
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 8.6e-32 140.6 82 79.3
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 2.8e-27 125.6 74 81.1
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 9.2e-26 120.6 98 62.2
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 7.8e-25 117.5 88 60.2
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 1.7e-24 116.3 76 69.7
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 4.3e-23 111.7 89 61.8
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 4.7e-22 108.2 127 48.8
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.2e-20 103.6 67 70.1
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 2.0e-20 102.8 61 80.3
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.3e-19 100.1 67 70.1
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 1.1e-18 97.1 82 53.7
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 2.4e-18 95.9 57 80.7
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 7.0e-18 94.4 52 88.5
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 2.3e-16 89.4 89 53.9
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 2.0e-12 76.3 112 44.6
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 4.6e-09 65.1 59 47.5
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.7e-08 63.2 40 67.5
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 3.0e-08 62.4 36 77.8


User provided reference genes

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