Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 2.0e-36 155.2 75 100.0
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 4.2e-31 137.5 76 90.8
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 5.5e-31 137.1 77 89.6
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 2.1e-30 135.2 73 87.7
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 1.0e-29 132.9 73 86.3
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 3.0e-29 131.3 74 86.5
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 6.7e-29 130.2 77 83.1
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 2.0e-28 128.6 72 84.7
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 2.6e-28 128.3 74 83.8
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 2.6e-28 128.3 73 86.3
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 3.3e-28 127.9 75 86.7
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 4.4e-28 127.5 78 84.6
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 5.7e-28 127.1 74 85.1
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 5.7e-28 127.1 72 84.7
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 1.3e-27 125.9 72 86.1
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 1.3e-27 125.9 74 82.4
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 1.3e-27 125.9 72 83.3
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 1.7e-27 125.6 73 86.3
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 2.2e-27 125.2 74 83.8
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 8.2e-27 123.2 80 80.0
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 8.2e-27 123.2 74 81.1
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 9.1e-26 119.8 66 84.8
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.2e-25 119.4 72 80.6
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 2.6e-25 118.2 75 77.3
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 4.5e-25 117.5 76 80.3
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 1.0e-24 116.3 73 79.5
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 1.3e-24 115.9 80 73.8
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 2.2e-24 115.2 72 81.9
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 2.9e-24 114.8 70 82.9
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 2.9e-24 114.8 70 82.9
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 3.8e-24 114.4 75 76.0
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 1.4e-23 112.5 70 81.4
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 1.9e-23 112.1 74 75.7
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 3.2e-23 111.3 69 79.7
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 3.2e-23 111.3 75 72.0
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 5.5e-23 110.5 71 76.1
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 7.2e-23 110.2 72 69.4
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 1.2e-22 109.4 75 76.0
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 1.2e-22 109.4 73 76.7
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 2.1e-22 108.6 77 76.6
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 2.1e-22 108.6 70 80.0
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 2.7e-22 108.2 74 77.0
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 4.7e-22 107.5 77 76.6
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 8.0e-22 106.7 76 73.7
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.0e-21 106.3 71 74.6
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 1.4e-21 105.9 71 74.6
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 3.0e-21 104.8 74 73.0
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 3.9e-21 104.4 71 76.1
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 3.9e-21 104.4 74 74.3
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 2.0e-20 102.1 74 74.3
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 2.0e-20 102.1 82 69.5
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 3.3e-20 101.3 82 67.1
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 3.3e-20 101.3 74 74.3
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 3.3e-20 101.3 74 74.3
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 3.3e-20 101.3 74 74.3
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 3.3e-20 101.3 71 67.6
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 4.4e-20 100.9 73 69.9
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 9.7e-20 99.8 78 67.9
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 9.7e-20 99.8 72 73.6
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 1.3e-19 99.4 70 71.4
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 2.8e-19 98.2 84 64.3
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 2.8e-19 98.2 75 69.3
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 4.8e-19 97.4 84 64.3
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 4.8e-19 97.4 70 68.6
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 6.3e-19 97.1 71 73.2
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 6.3e-19 97.1 66 72.7
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 6.3e-19 97.1 71 66.2
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 6.3e-19 97.1 71 66.2
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 6.3e-19 97.1 71 73.2
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.1e-18 96.3 69 75.4
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 1.4e-18 95.9 82 65.9
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 1.4e-18 95.9 82 68.3
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 2.4e-18 95.1 68 73.5
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 4.1e-18 94.4 72 65.3
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 5.3e-18 94.0 86 61.6
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 5.3e-18 94.0 80 65.0
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 7.0e-18 93.6 74 62.2
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 1.2e-17 92.8 83 63.9
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 1.2e-17 92.8 83 63.9
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 1.6e-17 92.4 78 66.7
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 2.0e-17 92.0 76 67.1
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 2.6e-17 91.7 69 68.1
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 2.6e-17 91.7 73 63.0
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 3.5e-17 91.3 83 62.7
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 3.5e-17 91.3 83 62.7
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 3.5e-17 91.3 82 63.4
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 4.5e-17 90.9 83 62.7
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 7.7e-17 90.1 79 62.0
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 7.7e-17 90.1 68 66.2
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 1.0e-16 89.7 82 63.4
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 1.0e-16 89.7 79 65.8
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 1.0e-16 89.7 78 65.4
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 1.0e-16 89.7 82 62.2
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 1.3e-16 89.4 76 61.8
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 1.3e-16 89.4 77 64.9
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 1.7e-16 89.0 82 59.8
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 1.7e-16 89.0 82 61.0
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 1.7e-16 89.0 82 61.0
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 1.7e-16 89.0 82 61.0
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 1.7e-16 89.0 82 61.0
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 1.7e-16 89.0 82 61.0
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 2.9e-16 88.2 78 64.1
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 2.9e-16 88.2 78 64.1
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 2.9e-16 88.2 78 64.1
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 2.9e-16 88.2 78 64.1
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 3.8e-16 87.8 83 61.4
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 5.0e-16 87.4 82 59.8
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 5.0e-16 87.4 84 59.5
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 6.5e-16 87.0 85 57.6
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 6.5e-16 87.0 56 76.8
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 8.5e-16 86.7 81 58.0
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 8.5e-16 86.7 79 63.3
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 8.5e-16 86.7 79 63.3
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 8.5e-16 86.7 73 64.4
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 8.5e-16 86.7 79 63.3
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 8.5e-16 86.7 73 64.4
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 8.5e-16 86.7 74 64.9
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 8.5e-16 86.7 73 64.4
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 8.5e-16 86.7 79 63.3
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 8.5e-16 86.7 79 63.3
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 1.1e-15 86.3 73 64.4
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 1.1e-15 86.3 82 61.0
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 1.1e-15 86.3 73 64.4
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 1.5e-15 85.9 83 60.2
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 1.5e-15 85.9 83 60.2
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 1.5e-15 85.9 78 62.8
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 3.2e-15 84.7 72 59.7
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 7.2e-15 83.6 65 61.5
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 2.1e-14 82.0 72 61.1
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 3.6e-14 81.3 73 56.2
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 4.7e-14 80.9 78 59.0
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 8.0e-14 80.1 64 59.4
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 1.0e-13 79.7 61 62.3
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 1.4e-13 79.3 63 63.5
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.8e-13 79.0 68 60.3
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 1.8e-13 79.0 63 58.7
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 2.3e-13 78.6 70 50.0
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 6.8e-13 77.0 78 56.4
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 2.0e-12 75.5 68 57.4
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 2.6e-12 75.1 82 54.9
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 4.4e-12 74.3 64 56.2
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 4.4e-12 74.3 78 53.8
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 5.7e-12 73.9 60 61.7
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 2.8e-11 71.6 93 47.3
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 3.1e-10 68.2 88 47.7
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 3.1e-10 68.2 75 50.7
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 3.5e-09 64.7 82 41.5
TAR365G0774 Trochodendron aralioides HOM05D004817 ORTHO05D005790 7.7e-09 63.5 87 48.3
HPP92_010590 Vanilla planifolia HOM05D004817 ORTHO05D005790 1.9e-07 58.9 53 62.3
Os01g0288200 Oryza sativa ssp. japonica HOM05D004817 ORTHO05D005790 9.4e-07 56.6 78 43.6


User provided reference genes

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