Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G123000 Phaseolus vulgaris HOM05D005773 ORTHO05D006930 9.8e-157 557.0 329 100.0
VMungo1215G1523 Vigna mungo HOM05D005773 ORTHO05D006930 1.8e-134 483.0 330 89.4
Glyma.13G118300 Glycine max HOM05D005773 ORTHO05D006930 3.5e-114 415.6 332 81.6
Glyma.17G041600 Glycine max HOM05D005773 ORTHO05D006930 1.7e-108 396.7 337 77.2
Medtr4g124080 Medicago truncatula HOM05D005773 ORTHO05D006930 1.9e-80 303.5 349 61.9
Lj4g0014107 Lotus japonicus HOM05D005773 ORTHO05D006930 2.5e-80 303.1 346 58.1
TPR.G12556 Trifolium pratense HOM05D005773 ORTHO05D006930 1.8e-78 297.0 357 60.2
Psat0s1206g0160 Pisum sativum HOM05D005773 ORTHO05D006930 9.0e-78 294.7 344 60.8
Ca_21368_v3 Cicer arietinum L. HOM05D005773 ORTHO05D006930 1.1e-72 277.7 337 59.9
Lalb_Chr13g0299011 Lupinus albus HOM05D005773 ORTHO05D006930 3.1e-70 269.6 359 56.0
arahy.Tifrunner.gnm1.ann1.YBC12K Arachis hypogaea HOM05D005773 ORTHO05D006930 1.1e-54 218.0 348 53.4
arahy.Tifrunner.gnm1.ann1.9W2SDJ Arachis hypogaea HOM05D005773 ORTHO05D006930 1.6e-53 214.2 344 54.9
arahy.Tifrunner.gnm1.ann1.RWG9MN Arachis hypogaea HOM05D005773 ORTHO05D006930 7.7e-53 211.8 344 54.9
arahy.Tifrunner.gnm1.ann1.F7JGYB Arachis hypogaea HOM05D005773 ORTHO05D006930 1.0e-49 201.4 274 62.8
QL06p014502 Quercus lobata HOM05D005773 ORTHO05D006930 8.2e-47 191.8 386 39.1
Prupe.1G103600 Prunus persica HOM05D005773 ORTHO05D006930 3.8e-44 183.0 386 43.8
RcHm_v2.0_Chr4g0427881 Rosa chinensis HOM05D005773 ORTHO05D006930 1.1e-43 181.4 364 44.0
arahy.Tifrunner.gnm1.ann1.AWA2M3 Arachis hypogaea HOM05D000254 ORTHO05D000165 9.4e-43 178.3 178 57.3
FvH4_4g21650 Fragaria vesca HOM05D005773 ORTHO05D006930 2.7e-42 176.8 363 45.5
FAN07G0153 Fragaria x ananassa HOM05D005773 ORTHO05D006930 8.0e-42 175.3 367 46.6
FAN17G1594 Fragaria x ananassa HOM05D005773 ORTHO05D006930 1.8e-41 174.1 356 45.2
MD16G1134300 Malus domestica HOM05D005773 ORTHO05D006930 2.7e-37 160.2 380 42.4
Haze_00756 Corylus avellana HOM05D005773 ORTHO05D006930 3.5e-37 159.8 323 36.2
MD13G1156700 Malus domestica HOM05D005773 ORTHO05D006930 3.5e-37 159.8 384 37.0
arahy.Tifrunner.gnm1.ann1.EN1MLR Arachis hypogaea HOM05D005773 ORTHO05D006930 4.5e-37 159.5 320 51.2
Potri.010G003200 Populus trichocarpa HOM05D005773 ORTHO05D006930 1.7e-36 157.5 365 40.5
Oeu012285.1 Olea europaea HOM05D005773 ORTHO05D006930 2.8e-34 150.2 397 31.5
Rhsim04G0249100 Rhododendron simsii HOM05D005773 ORTHO05D006930 2.8e-34 150.2 411 38.4
TAR633G1051 Trochodendron aralioides HOM05D005773 ORTHO05D006930 2.8e-34 150.2 326 39.0
MBI19_g30285_MAGBIO Magnolia biondii HOM05D005773 ORTHO05D006930 4.0e-33 146.4 318 42.5
Sabra10G0002700 Salix brachista HOM05D005773 ORTHO05D006930 5.2e-33 146.0 361 38.8
CSS0030034 Camellia sinensis var. sinensis HOM05D005773 ORTHO05D006930 6.8e-33 145.6 149 52.3
CiPaw.01G128000 Carya illinoinensis HOM05D005773 ORTHO05D006930 6.8e-33 145.6 276 38.4
CANSAT78G1256 Cannabis sativa HOM05D005773 ORTHO05D006930 2.6e-32 143.7 373 38.6
Nn4g25353 Nelumbo nucifera HOM05D005773 ORTHO05D006930 3.4e-32 143.3 381 34.4
Aqoxy2G02494 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 1.3e-31 141.4 366 43.2
Manes.03G212700 Manihot esculenta HOM05D005773 ORTHO05D006930 1.3e-31 141.4 326 35.6
EL10Ac3g06235 Beta vulgaris HOM05D005773 ORTHO05D006930 1.7e-31 141.0 300 38.0
Dinv24720 Davidia involucrata HOM05D005773 ORTHO05D006930 4.9e-31 139.4 391 36.1
Gorai.007G116800 Gossypium raimondii HOM05D005773 ORTHO05D006930 1.8e-30 137.5 362 34.0
GSVIVG01017699001 Vitis vinifera HOM05D005773 ORTHO05D006930 2.4e-30 137.1 316 35.1
Cfa015740 Carpinus fangiana HOM05D005773 ORTHO05D006930 7.0e-30 135.6 195 41.0
TWI53G0973 Tripterygium wilfordii HOM05D005773 ORTHO05D006930 7.0e-30 135.6 341 40.5
Aqoxy2G02493 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 1.2e-29 134.8 385 33.8
Potri.002G187300 Populus trichocarpa HOM05D005773 ORTHO05D006930 1.6e-29 134.4 316 35.4
Gohir.D11G109200 Gossypium hirsutum HOM05D005773 ORTHO05D006930 2.0e-29 134.0 376 33.5
Hund12260 Selenicereus undatus HOM05D005773 ORTHO05D006930 2.0e-29 134.0 321 34.0
Aa31LG10G5470 Aethionema arabicum HOM05D005773 ORTHO05D006930 3.5e-29 133.3 377 36.6
BcaB04g17451 Brassica carinata HOM05D005773 ORTHO05D006930 3.5e-29 133.3 359 37.3
Duzib133G1161 Durio zibethinus HOM05D005773 ORTHO05D006930 5.9e-29 132.5 337 34.1
Gohir.A11G104400 Gossypium hirsutum HOM05D005773 ORTHO05D006930 1.0e-28 131.7 362 34.5
Thecc.01G324900 Theobroma cacao HOM05D005773 ORTHO05D006930 1.7e-28 131.0 399 31.3
Eucgr.H04131 Eucalyptus grandis HOM05D005773 ORTHO05D006930 2.3e-28 130.6 345 39.4
Nn3g21943 Nelumbo nucifera HOM05D005773 ORTHO05D006930 2.3e-28 130.6 389 39.8
PSO210G3229 Papaver somniferum HOM05D005773 ORTHO05D006930 2.3e-28 130.6 351 41.0
Ah.07g203560 Amaranthus hybridus HOM05D005773 ORTHO05D006930 3.8e-28 129.8 308 40.3
THA.LOC104802618 Tarenaya hassleriana HOM05D005773 ORTHO05D006930 5.0e-28 129.4 388 40.2
Hma1.2p1_1449F.1_g284070 Hydrangea macrophylla HOM05D005773 ORTHO05D006930 8.6e-28 128.6 157 51.0
Cpa.g.sc146.13 Carica papaya HOM05D005773 ORTHO05D006930 3.3e-27 126.7 352 33.8
Nn3g21941 Nelumbo nucifera HOM05D005773 ORTHO05D006930 3.3e-27 126.7 309 46.0
AT1G48300 Arabidopsis thaliana HOM05D005773 ORTHO05D006930 4.3e-27 126.3 370 34.3
A08p04910 Brassica napus HOM05D005773 ORTHO05D006930 9.5e-27 125.2 365 36.2
BraA08t32517Z Brassica rapa HOM05D005773 ORTHO05D006930 9.5e-27 125.2 365 36.2
Actinidia18514 Actinidia chinensis HOM05D005773 ORTHO05D006930 2.1e-26 124.0 346 34.1
Carub.0001s3743 Capsella rubella HOM05D005773 ORTHO05D006930 2.1e-26 124.0 372 33.6
Manes.01G234700 Manihot esculenta HOM05D005773 ORTHO05D006930 2.1e-26 124.0 348 42.0
CARHR037910 Cardamine hirsuta HOM05D005773 ORTHO05D006930 3.6e-26 123.2 371 35.6
MSTRG.13210 Avicennia marina HOM05D005773 ORTHO05D006930 8.0e-26 122.1 178 38.2
Sc25g0002150 Simmondsia chinensis HOM05D005773 ORTHO05D006930 1.0e-25 121.7 337 39.5
Actinidia01071 Actinidia chinensis HOM05D005773 ORTHO05D006930 1.4e-25 121.3 97 60.8
C08p05240 Brassica napus HOM05D005773 ORTHO05D006930 2.3e-25 120.6 364 37.4
BolC8t47338H Brassica oleracea HOM05D005773 ORTHO05D006930 5.2e-25 119.4 360 36.4
PGR004G1534 Punica granatum HOM05D005773 ORTHO05D006930 6.8e-25 119.0 350 41.4
AL1G54900 Arabidopsis lyrata HOM05D005773 ORTHO05D006930 1.2e-24 118.2 360 33.6
AUR62002540 Chenopodium quinoa HOM05D005773 ORTHO05D006930 1.2e-24 118.2 357 34.5
Duzib138G1928 Durio zibethinus HOM05D005773 ORTHO05D006930 1.5e-24 117.9 106 57.5
Migut.H01460 Erythranthe guttata HOM05D005773 ORTHO05D006930 2.0e-24 117.5 348 33.0
Thhalv10011577m.g Eutrema salsugineum HOM05D005773 ORTHO05D006930 2.6e-24 117.1 376 34.6
ECA246G2714 Erigeron canadensis HOM05D005773 ORTHO05D006930 2.9e-23 113.6 295 44.1
Lsat_1_v5_gn_6_118320 Lactuca sativa HOM05D005773 ORTHO05D006930 2.9e-23 113.6 355 34.1
Sp1g35250 Schrenkiella parvula HOM05D005773 ORTHO05D006930 2.9e-23 113.6 380 33.2
SalBow7G0248 Salvia bowleyana HOM05D005773 ORTHO05D006930 3.7e-23 113.2 346 30.3
SalBow7G4520 Salvia bowleyana HOM05D005773 ORTHO05D006930 3.7e-23 113.2 346 30.6
PGSC0003DMG400004596 Solanum tuberosum HOM05D005773 ORTHO05D006930 6.4e-23 112.5 418 34.9
AUR62023652 Chenopodium quinoa HOM05D005773 ORTHO05D006930 8.3e-23 112.1 140 46.4
MSTRG.14719 Avicennia marina HOM05D005773 ORTHO05D006930 1.1e-22 111.7 362 30.1
CDE09G0185 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 1.1e-22 111.7 351 33.6
Sopen12g033600 Solanum pennellii HOM05D005773 ORTHO05D006930 1.4e-22 111.3 417 32.6
COL.COLO4_23133 Corchorus olitorius HOM05D005773 ORTHO05D006930 1.9e-22 110.9 97 62.9
MELO3C006755.2 Cucumis melo HOM05D005773 ORTHO05D006930 4.1e-22 109.8 106 58.5
HanXRQChr05g0148961 Helianthus annuus HOM05D005773 ORTHO05D006930 4.1e-22 109.8 350 37.4
Sed0002380 Sechium edule HOM05D005773 ORTHO05D006930 7.0e-22 109.0 328 38.1
Atru.chr5.865 Acer truncatum HOM05D005773 ORTHO05D006930 9.2e-22 108.6 175 39.4
unitig_26.g9353 Utricularia gibba HOM05D005773 ORTHO05D006930 1.2e-21 108.2 190 37.4
Solyc12g098850.2 Solanum lycopersicum HOM05D005773 ORTHO05D006930 2.0e-21 107.5 115 52.2
Cc03_g00040 Coffea canephora HOM05D005773 ORTHO05D006930 2.7e-21 107.1 96 59.4
ClCG05G006890 Citrullus lanatus HOM05D005773 ORTHO05D006930 3.5e-21 106.7 333 42.3
CsaV3_3G015560 Cucumis sativus L. HOM05D005773 ORTHO05D006930 3.5e-21 106.7 316 40.2
Zm00001eb417470 Zea mays HOM05D005773 ORTHO05D006930 4.6e-21 106.3 104 57.7
CDE02G3050 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 6.0e-21 105.9 363 31.7
CAN.G484.97 Capsicum annuum HOM05D005773 ORTHO05D006930 1.0e-20 105.1 402 30.8
Nitab4.5_0000978g0060 Nicotiana tabacum HOM05D005773 ORTHO05D006930 1.0e-20 105.1 371 31.3
Sed0009476 Sechium edule HOM05D005773 ORTHO05D006930 1.3e-20 104.8 100 56.0
Nitab4.5_0012375g0020 Nicotiana tabacum HOM05D005773 ORTHO05D006930 2.3e-20 104.0 115 52.2
Peaxi162Scf00323g00817 Petunia axillaris HOM05D005773 ORTHO05D006930 3.9e-20 103.2 115 50.4
Ciclev10020833m.g Citrus clementina HOM05D005773 ORTHO05D006930 5.0e-20 102.8 107 53.3
ATR0796G282 Amborella trichopoda HOM05D005773 ORTHO05D006930 5.6e-19 99.4 344 38.4
Ciclev10005574m.g Citrus clementina HOM05D005773 ORTHO05D006930 7.3e-19 99.0 307 32.2
SGA_v2.0_scaffold109G31080 Striga asiatica HOM05D005773 ORTHO05D006930 9.5e-19 98.6 352 27.0
BcaC07g37153 Brassica carinata HOM05D005773 ORTHO05D006930 2.1e-18 97.4 347 35.7
Os05g0137300 Oryza sativa ssp. japonica HOM05D005773 ORTHO05D006930 2.3e-17 94.0 107 49.5
Atru.chr4.3177 Acer truncatum HOM05D005773 ORTHO05D006930 9.8e-16 88.6 113 43.4
TAR625G0572 Trochodendron aralioides HOM05D005773 ORTHO05D006930 1.1e-11 75.1 90 45.6
HPP92_012765 Vanilla planifolia HOM05D005773 ORTHO05D006930 3.3e-11 73.6 43 79.1
Hma1.2p1_1067F.1_g253800 Hydrangea macrophylla HOM05D005773 ORTHO05D006930 4.3e-11 73.2 80 52.5
SEGI_38196 Sequoiadendron giganteum HOM05D005773 ORTHO05D006930 7.3e-11 72.4 102 37.3
SEGI_24223 Sequoiadendron giganteum HOM05D005773 ORTHO05D006930 2.1e-10 70.9 74 44.6
arahy.Tifrunner.gnm1.ann1.V4J88K Arachis hypogaea HOM05D005773 ORTHO05D006930 2.6e-08 63.9 124 40.3
CARHR041400 Cardamine hirsuta HOM05D005773 ORTHO05D006930 3.4e-08 63.5 48 56.2
Atru.chr9.2474 Acer truncatum HOM05D000366 ORTHO05D001950 2.2e-07 60.8 90 42.2
Mapoly0035s0141 Marchantia polymorpha HOM05D005773 ORTHO05D006930 2.9e-07 60.5 100 34.0
TAR624G0439 Trochodendron aralioides HOM05D005773 ORTHO05D006930 2.9e-07 60.5 79 41.8
Cpa.g.sc57.12 Carica papaya HOM05D005773 ORTHO05D006930 4.9e-07 59.7 45 64.4
Pp3c14_16980 Physcomitrium patens HOM05D029403 ORTHO05D006930 8.3e-07 58.9 96 36.5
Pp3c17_20330 Physcomitrium patens HOM05D029403 ORTHO05D006930 8.3e-07 58.9 60 45.0
FAN07G1029 Fragaria x ananassa HOM05D005773 ORTHO05D006930 1.1e-06 58.5 137 34.3


User provided reference genes

Program Settings