Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G114500 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 2.1e-50 202.2 111 100.0
VMungo1215G0235 Vigna mungo HOM05D005046 ORTHO05D006194 2.1e-50 202.2 111 100.0
Glyma.17G033800 Glycine max HOM05D005046 ORTHO05D006194 5.1e-49 197.6 111 96.4
Glyma.07G239500 Glycine max HOM05D005046 ORTHO05D006194 9.6e-48 193.4 111 93.7
Lj6g0015111 Lotus japonicus HOM05D005046 ORTHO05D006194 2.8e-47 191.8 111 92.8
Medtr2g034010 Medicago truncatula HOM05D005046 ORTHO05D006194 8.1e-47 190.3 111 92.8
Lalb_Chr20g0120821 Lupinus albus HOM05D005046 ORTHO05D006194 1.8e-46 189.1 111 91.0
Lalb_Chr18g0058661 Lupinus albus HOM05D005046 ORTHO05D006194 4.0e-46 188.0 111 91.0
Psat1g160840 Pisum sativum HOM05D005046 ORTHO05D006194 5.2e-46 187.6 111 91.9
TPR.G13743 Trifolium pratense HOM05D005046 ORTHO05D006194 9.0e-46 186.8 111 90.1
Ca_00977_v3 Cicer arietinum L. HOM05D005046 ORTHO05D006194 1.2e-45 186.4 111 90.1
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea HOM05D005046 ORTHO05D006194 2.0e-45 185.7 111 89.2
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea HOM05D005046 ORTHO05D006194 2.0e-45 185.7 111 89.2
CsaV3_6G028590 Cucumis sativus L. HOM05D005046 ORTHO05D006194 2.0e-45 185.7 111 91.0
MD16G1153600 Malus domestica HOM05D005046 ORTHO05D006194 5.8e-45 184.1 109 90.8
MELO3C021266.2 Cucumis melo HOM05D005046 ORTHO05D006194 7.6e-45 183.7 111 90.1
GSVIVG01034987001 Vitis vinifera HOM05D005046 ORTHO05D006194 9.9e-45 183.3 111 90.1
Sed0022816 Sechium edule HOM05D005046 ORTHO05D006194 1.7e-44 182.6 111 88.3
Phvul.006G118400 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 2.9e-44 181.8 111 90.1
Prupe.1G116800 Prunus persica HOM05D005046 ORTHO05D006194 2.9e-44 181.8 112 90.2
TWI73G0015 Tripterygium wilfordii HOM05D005046 ORTHO05D006194 2.9e-44 181.8 111 87.4
VMungo0540G1157 Vigna mungo HOM05D005046 ORTHO05D006194 2.9e-44 181.8 111 90.1
TAR636G1364 Trochodendron aralioides HOM05D005046 ORTHO05D006194 3.8e-44 181.4 111 89.2
Dinv44282 Davidia involucrata HOM05D005046 ORTHO05D006194 1.1e-43 179.9 111 88.3
MD13G1153200 Malus domestica HOM05D005046 ORTHO05D006194 1.4e-43 179.5 111 89.2
Manes.15G000300 Manihot esculenta HOM05D005046 ORTHO05D006194 1.4e-43 179.5 112 90.2
CiPaw.01G138200 Carya illinoinensis HOM05D005046 ORTHO05D006194 1.9e-43 179.1 112 88.4
Glyma.15G139900 Glycine max HOM05D005046 ORTHO05D006194 3.2e-43 178.3 111 88.3
Dinv15163 Davidia involucrata HOM05D005046 ORTHO05D006194 4.2e-43 177.9 111 86.5
Nn3g21734 Nelumbo nucifera HOM05D005046 ORTHO05D006194 5.4e-43 177.6 111 88.3
QL05p065557 Quercus lobata HOM05D005046 ORTHO05D006194 5.4e-43 177.6 109 89.0
CiPaw.02G074700 Carya illinoinensis HOM05D005046 ORTHO05D006194 7.1e-43 177.2 112 87.5
Potri.010G146100 Populus trichocarpa HOM05D005046 ORTHO05D006194 7.1e-43 177.2 112 89.3
Lj6A691T78 Lonicera japonica HOM05D005046 ORTHO05D006194 9.3e-43 176.8 111 86.5
HanXRQChr11g0353491 Helianthus annuus HOM05D005046 ORTHO05D006194 1.2e-42 176.4 109 89.0
Sabra10G0112600 Salix brachista HOM05D005046 ORTHO05D006194 1.6e-42 176.0 110 88.2
Sed0009015 Sechium edule HOM05D005046 ORTHO05D006194 1.6e-42 176.0 109 86.2
SGA_v2.0_scaffold104G30073 Striga asiatica HOM05D005046 ORTHO05D006194 2.1e-42 175.6 109 87.2
Cfa015310 Carpinus fangiana HOM05D005046 ORTHO05D006194 2.7e-42 175.3 112 86.6
ClCG06G004560 Citrullus lanatus HOM05D005046 ORTHO05D006194 3.5e-42 174.9 127 78.7
CSS0005662 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 4.6e-42 174.5 111 87.4
CSS0011224 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 4.6e-42 174.5 111 87.4
CSS0039452 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 4.6e-42 174.5 111 87.4
MSTRG.10153 Avicennia marina HOM05D005046 ORTHO05D006194 7.8e-42 173.7 109 88.1
CANSAT78G2375 Cannabis sativa HOM05D005046 ORTHO05D006194 7.8e-42 173.7 113 84.1
Glyma.09G035300 Glycine max HOM05D005046 ORTHO05D006194 7.8e-42 173.7 111 86.5
Aqoxy5G02541 Aquilegia oxysepala HOM05D005046 ORTHO05D006194 1.0e-41 173.3 111 84.7
MSTRG.24823 Avicennia marina HOM05D005046 ORTHO05D006194 1.0e-41 173.3 111 85.6
PGR004G2877 Punica granatum HOM05D005046 ORTHO05D006194 1.0e-41 173.3 112 88.4
COL.COLO4_34610 Corchorus olitorius HOM05D005046 ORTHO05D006194 1.7e-41 172.6 111 86.5
MBI18_g37558_MAGBIO Magnolia biondii HOM05D005046 ORTHO05D006194 1.7e-41 172.6 133 74.4
Lsat_1_v5_gn_1_41381 Lactuca sativa HOM05D005046 ORTHO05D006194 2.3e-41 172.2 109 87.2
Eucgr.H04047 Eucalyptus grandis HOM05D005046 ORTHO05D006194 3.9e-41 171.4 112 86.6
SalBow5G2652 Salvia bowleyana HOM05D005046 ORTHO05D006194 3.9e-41 171.4 109 85.3
Ciclev10006264m.g Citrus clementina HOM05D005046 ORTHO05D006194 5.1e-41 171.0 112 84.8
Duzib212G1042 Durio zibethinus HOM05D005046 ORTHO05D006194 5.1e-41 171.0 111 85.6
Gohir.D01G023544 Gossypium hirsutum HOM05D005046 ORTHO05D006194 5.1e-41 171.0 111 85.6
Gorai.002G030300 Gossypium raimondii HOM05D005046 ORTHO05D006194 5.1e-41 171.0 111 85.6
Actinidia14256 Actinidia chinensis HOM05D005046 ORTHO05D006194 8.7e-41 170.2 111 83.8
PGSC0003DMG400004620 Solanum tuberosum HOM05D005046 ORTHO05D006194 8.7e-41 170.2 111 85.6
Migut.G00065 Erythranthe guttata HOM05D005046 ORTHO05D006194 1.5e-40 169.5 109 84.4
Solyc12g099240.2 Solanum lycopersicum HOM05D005046 ORTHO05D006194 1.5e-40 169.5 111 83.8
Sopen12g033920 Solanum pennellii HOM05D005046 ORTHO05D006194 1.5e-40 169.5 111 83.8
HPP92_016092 Vanilla planifolia HOM05D005046 ORTHO05D006194 1.5e-40 169.5 111 83.8
Gohir.A01G034600 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.9e-40 169.1 111 84.7
Oeu001169.1 Olea europaea HOM05D005046 ORTHO05D006194 2.5e-40 168.7 104 89.4
Gorai.005G067500 Gossypium raimondii HOM05D005046 ORTHO05D006194 3.3e-40 168.3 111 84.7
Gohir.A02G054900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 4.3e-40 167.9 111 84.7
CDE02G0992 Ceratophyllum demersum HOM05D005046 ORTHO05D006194 5.6e-40 167.5 111 81.1
RcHm_v2.0_Chr4g0425361 Rosa chinensis HOM05D005046 ORTHO05D006194 5.6e-40 167.5 112 83.9
Thecc.04G301400 Theobroma cacao HOM05D005046 ORTHO05D006194 7.3e-40 167.2 111 83.8
Duzib052G0826 Durio zibethinus HOM05D005046 ORTHO05D006194 9.6e-40 166.8 111 82.9
FvH4_4g19820 Fragaria vesca HOM05D005046 ORTHO05D006194 9.6e-40 166.8 112 83.9
FAN07G0875 Fragaria x ananassa HOM05D005046 ORTHO05D006194 9.6e-40 166.8 112 83.9
FAN12G2964 Fragaria x ananassa HOM05D005046 ORTHO05D006194 9.6e-40 166.8 112 83.9
PSO210G4010 Papaver somniferum HOM05D005046 ORTHO05D006194 2.1e-39 165.6 112 82.1
PSO761G0203 Papaver somniferum HOM05D005046 ORTHO05D006194 2.1e-39 165.6 112 82.1
Haze_01302 Corylus avellana HOM05D005046 ORTHO05D006194 3.6e-39 164.9 112 83.9
Peaxi162Scf00228g00326 Petunia axillaris HOM05D005046 ORTHO05D006194 4.8e-39 164.5 111 83.8
CAN.G484.64 Capsicum annuum HOM05D005046 ORTHO05D006194 1.1e-38 163.3 111 83.8
Sc25g0003240 Simmondsia chinensis HOM05D005046 ORTHO05D006194 1.4e-38 162.9 111 84.7
unitig_749.g13361 Utricularia gibba HOM05D005046 ORTHO05D006194 1.4e-38 162.9 105 81.9
Actinidia18456 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.8e-38 162.5 111 82.9
Actinidia40381 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.8e-38 162.5 111 82.9
Os03g0832300 Oryza sativa ssp. japonica HOM05D005046 ORTHO05D006194 3.1e-38 161.8 103 83.5
vmacro08042 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 5.3e-38 161.0 109 79.8
ATR0693G376 Amborella trichopoda HOM05D005046 ORTHO05D006194 9.0e-38 160.2 99 88.9
Rhsim04G0239300 Rhododendron simsii HOM05D005046 ORTHO05D006194 9.0e-38 160.2 112 78.6
Hund11979 Selenicereus undatus HOM05D005046 ORTHO05D006194 9.0e-38 160.2 111 81.1
Rhsim02G0003600 Rhododendron simsii HOM05D005046 ORTHO05D006194 2.6e-37 158.7 110 83.6
Thhalv10021793m.g Eutrema salsugineum HOM05D005046 ORTHO05D006194 3.4e-37 158.3 110 80.9
Nitab4.5_0000403g0120 Nicotiana tabacum HOM05D005046 ORTHO05D006194 4.5e-37 157.9 111 79.3
Sp3g05540 Schrenkiella parvula HOM05D005046 ORTHO05D006194 4.5e-37 157.9 110 81.8
Zm00001eb211320 Zea mays HOM05D005046 ORTHO05D006194 7.6e-37 157.1 100 84.0
THA.LOC104818881 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 9.9e-37 156.8 110 80.9
CARHR081150 Cardamine hirsuta HOM05D005046 ORTHO05D006194 1.3e-36 156.4 110 80.9
THA.LOC104805014 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 1.3e-36 156.4 110 80.9
AT3G06610 Arabidopsis thaliana HOM05D005046 ORTHO05D006194 1.7e-36 156.0 110 80.9
Potri.008G105000 Populus trichocarpa HOM05D005046 ORTHO05D006194 1.7e-36 156.0 112 80.4
A05p41430 Brassica napus HOM05D005046 ORTHO05D006194 8.4e-36 153.7 110 79.1
C05p60640 Brassica napus HOM05D005046 ORTHO05D006194 8.4e-36 153.7 110 79.1
BolC5t34723H Brassica oleracea HOM05D005046 ORTHO05D006194 8.4e-36 153.7 110 79.1
BraA05t22864Z Brassica rapa HOM05D005046 ORTHO05D006194 8.4e-36 153.7 110 79.1
Carub.0003s0607 Capsella rubella HOM05D005046 ORTHO05D006194 8.4e-36 153.7 110 80.0
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus HOM05D005046 ORTHO05D006194 1.1e-35 153.3 110 79.1
Aa31LG5G17170 Aethionema arabicum HOM05D005046 ORTHO05D006194 1.9e-35 152.5 110 79.1
EL10Ac3g05511 Beta vulgaris HOM05D005046 ORTHO05D006194 3.2e-35 151.8 111 77.5
AL3G17660 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 4.2e-35 151.4 110 79.1
AUR62016211 Chenopodium quinoa HOM05D005046 ORTHO05D006194 4.2e-35 151.4 113 77.9
BraA01t04428Z Brassica rapa HOM05D005046 ORTHO05D006194 7.1e-35 150.6 110 77.3
PSO063G6303 Papaver somniferum HOM05D005046 ORTHO05D006194 1.2e-34 149.8 112 74.1
Actinidia13356 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.6e-34 149.4 99 83.8
BolC1t05599H Brassica oleracea HOM05D005046 ORTHO05D006194 1.6e-34 149.4 110 78.2
BcaC05g30546 Brassica carinata HOM05D005046 ORTHO05D006194 2.7e-34 148.7 111 78.4
Pp3c15_12430 Physcomitrium patens HOM05D005046 ORTHO05D006194 2.7e-34 148.7 109 77.1
Ah.13g071840 Amaranthus hybridus HOM05D005046 ORTHO05D006194 6.0e-34 147.5 111 74.8
CAN.G158.24 Capsicum annuum HOM05D005046 ORTHO05D006194 6.0e-34 147.5 111 75.7
PSO017G4602 Papaver somniferum HOM05D005046 ORTHO05D006194 6.0e-34 147.5 112 75.9
Sabra08G0079200 Salix brachista HOM05D005046 ORTHO05D006194 7.9e-34 147.1 112 78.6
AUR62039277 Chenopodium quinoa HOM05D005046 ORTHO05D006194 1.3e-33 146.4 111 74.8
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis HOM05D005046 ORTHO05D006194 3.3e-32 141.7 108 74.1
Nitab4.5_0000496g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 2.8e-31 138.7 111 71.2
SMO304G0028 Selaginella moellendorffii HOM05D005046 ORTHO05D006194 3.7e-31 138.3 106 69.8
ECA240G2346 Erigeron canadensis HOM05D005046 ORTHO05D006194 1.8e-30 136.0 112 72.3
vmacro15180 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 1.5e-29 132.9 182 52.7
Mapoly0010s0169 Marchantia polymorpha HOM05D005046 ORTHO05D006194 5.8e-29 131.0 108 68.5
Nitab4.5_0002150g0070 Nicotiana tabacum HOM05D005046 ORTHO05D006194 5.8e-29 131.0 111 69.4
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis HOM05D005046 ORTHO05D006194 1.4e-27 126.3 96 74.0
Cc03_g00760 Coffea canephora HOM05D005046 ORTHO05D006194 1.9e-27 125.9 83 85.5
Nitab4.5_0002294g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 5.5e-27 124.4 111 67.6
Manes.03G205301 Manihot esculenta HOM05D005046 ORTHO05D006194 7.1e-27 124.0 102 70.6
CBR_g51449 Chara braunii HOM05D005046 ORTHO05D006194 2.7e-26 122.1 96 67.7
BcaC09g47907 Brassica carinata HOM05D005046 ORTHO05D006194 1.6e-23 112.8 110 63.6
Gohir.D02G059900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 4.0e-22 108.2 68 89.7
TAR365G1002 Trochodendron aralioides HOM05D005046 ORTHO05D006194 2.5e-19 99.0 62 83.9
Lj5g0009192 Lotus japonicus HOM05D005046 ORTHO05D006194 3.9e-17 91.7 92 59.8
Atru.chr4.2994 Acer truncatum HOM05D005046 ORTHO05D006194 6.7e-17 90.9 57 82.5
Lj1g0019312 Lotus japonicus HOM05D005046 ORTHO05D006194 3.3e-16 88.6 109 51.4
Eucgr.J02724 Eucalyptus grandis HOM05D005046 ORTHO05D006194 1.3e-15 86.7 50 92.0
DCAR_026983 Daucus carota HOM05D005046 ORTHO05D006194 2.4e-14 82.4 60 80.0
RcHm_v2.0_Chr5g0023271 Rosa chinensis HOM05D005046 ORTHO05D006194 6.9e-14 80.9 62 72.6
AL3G18870 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 1.5e-13 79.7 62 75.8
SEGI_33495 Sequoiadendron giganteum HOM05D005046 ORTHO05D006194 1.1e-11 73.6 57 70.2
Atru.chr4.2993 Acer truncatum HOM05D005046 ORTHO05D006194 6.1e-10 67.8 52 73.1
Cre01.g041000 Chlamydomonas reinhardtii HOM05D005046 ORTHO05D006194 8.2e-07 57.4 102 41.2


User provided reference genes

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