Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G113900 Phaseolus vulgaris HOM05D006559 ORTHO05D008867 0.0e+00 1372.1 676 100.0
VMungo1215G0265 Vigna mungo HOM05D006559 ORTHO05D008867 0.0e+00 1237.6 676 90.1
Glyma.17G033200 Glycine max HOM05D006559 ORTHO05D008867 0.0e+00 1094.3 684 81.3
Glyma.07G240200 Glycine max HOM05D006559 ORTHO05D008867 0.0e+00 1088.9 681 80.8
Ca_21444_v3 Cicer arietinum L. HOM05D006559 ORTHO05D008867 6.0e-302 1040.4 680 77.4
Lj4g0009670 Lotus japonicus HOM05D006559 ORTHO05D008867 1.3e-301 1039.3 673 77.4
Medtr4g122000 Medicago truncatula HOM05D006559 ORTHO05D008867 2.4e-295 1018.5 652 77.8
Psat4g024080 Pisum sativum HOM05D006559 ORTHO05D008867 6.6e-293 1010.4 664 76.2
arahy.Tifrunner.gnm1.ann1.Y9UCUD Arachis hypogaea HOM05D006559 ORTHO05D008867 8.4e-288 993.4 679 74.5
arahy.Tifrunner.gnm1.ann1.57X5SD Arachis hypogaea HOM05D006559 ORTHO05D008867 1.0e-285 986.5 679 74.1
Lalb_Chr07g0182081 Lupinus albus HOM05D006559 ORTHO05D008867 4.3e-284 981.1 654 76.0
TPR.G5276 Trifolium pratense HOM05D006559 ORTHO05D008867 1.6e-275 952.6 694 70.5
Dinv44291 Davidia involucrata HOM05D006559 ORTHO05D008867 2.5e-255 885.6 664 67.6
Thecc.04G299700 Theobroma cacao HOM05D006559 ORTHO05D008867 1.3e-248 863.2 665 66.0
Cfa008663 Carpinus fangiana HOM05D006559 ORTHO05D008867 1.4e-247 859.8 674 64.8
vmacro08053 Vaccinium macrocarpon HOM05D006559 ORTHO05D008867 2.5e-247 859.0 656 66.0
Rhsim04G0235400 Rhododendron simsii HOM05D006559 ORTHO05D008867 2.1e-246 855.9 659 66.0
Hma1.2p1_0078F.1_g039970 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 2.6e-241 839.0 622 67.7
Cpa.g.sc9.65 Carica papaya HOM05D006559 ORTHO05D008867 1.7e-240 836.3 658 65.3
Gohir.A09G234700 Gossypium hirsutum HOM05D006559 ORTHO05D008867 1.9e-239 832.8 659 63.6
CANSAT64G0770 Cannabis sativa HOM05D006559 ORTHO05D008867 3.2e-239 832.0 650 65.1
Potri.010G144400 Populus trichocarpa HOM05D006559 ORTHO05D008867 4.2e-239 831.6 655 62.9
Gohir.D09G235500 Gossypium hirsutum HOM05D006559 ORTHO05D008867 5.5e-239 831.2 659 63.7
Sabra10G0111500 Salix brachista HOM05D006559 ORTHO05D008867 5.5e-239 831.2 653 63.4
Gorai.006G258500 Gossypium raimondii HOM05D006559 ORTHO05D008867 2.1e-238 829.3 655 63.8
Manes.03G204300 Manihot esculenta HOM05D006559 ORTHO05D008867 8.8e-237 823.9 662 63.4
TWI73G0870 Tripterygium wilfordii HOM05D006559 ORTHO05D008867 5.7e-236 821.2 656 62.7
GSVIVG01035001001 Vitis vinifera HOM05D006559 ORTHO05D008867 6.3e-235 817.8 653 64.3
RcHm_v2.0_Chr4g0424901 Rosa chinensis HOM05D006559 ORTHO05D008867 1.6e-233 813.1 667 62.4
Ciclev10004497m.g Citrus clementina HOM05D006559 ORTHO05D008867 2.5e-231 805.8 667 63.3
PGSC0003DMG400021843 Solanum tuberosum HOM05D006559 ORTHO05D008867 2.5e-231 805.8 648 63.9
Nn3g21720 Nelumbo nucifera HOM05D006559 ORTHO05D008867 4.2e-231 805.1 657 62.3
Sopen01g026050 Solanum pennellii HOM05D006559 ORTHO05D008867 7.2e-231 804.3 668 63.0
CAN.G244.5 Capsicum annuum HOM05D006559 ORTHO05D008867 2.3e-229 799.3 647 62.9
Solyc01g059920.4 Solanum lycopersicum HOM05D006559 ORTHO05D008867 4.0e-229 798.5 668 62.7
Peaxi162Scf00228g00226 Petunia axillaris HOM05D006559 ORTHO05D008867 1.5e-228 796.6 669 62.0
MD13G1155000 Malus domestica HOM05D006559 ORTHO05D008867 4.4e-228 795.0 662 62.4
Haze_11682 Corylus avellana HOM05D006559 ORTHO05D008867 9.7e-228 793.9 733 58.4
Sc19g0003140 Simmondsia chinensis HOM05D006559 ORTHO05D008867 9.7e-228 793.9 673 59.3
Nitab4.5_0011895g0010 Nicotiana tabacum HOM05D006559 ORTHO05D008867 2.2e-227 792.7 671 62.1
Eucgr.H04041 Eucalyptus grandis HOM05D006559 ORTHO05D008867 3.7e-227 792.0 663 61.4
CsaV3_3G015150 Cucumis sativus L. HOM05D006559 ORTHO05D008867 6.3e-227 791.2 671 62.0
MELO3C006713.2 Cucumis melo HOM05D006559 ORTHO05D008867 8.3e-227 790.8 660 63.6
Migut.G00055 Erythranthe guttata HOM05D006559 ORTHO05D008867 1.1e-226 790.4 651 61.6
Hund11970 Selenicereus undatus HOM05D006559 ORTHO05D008867 2.4e-226 789.3 662 59.2
MBI18_g32021_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D008867 2.0e-225 786.2 669 60.4
Sed0004607 Sechium edule HOM05D006559 ORTHO05D008867 3.5e-225 785.4 681 60.8
CSS0039775 Camellia sinensis var. sinensis HOM05D006559 ORTHO05D008867 2.9e-224 782.3 654 62.4
Cc03_g00890 Coffea canephora HOM05D006559 ORTHO05D008867 2.9e-224 782.3 645 62.5
PSO210G1317 Papaver somniferum HOM05D006559 ORTHO05D008867 8.5e-224 780.8 662 60.1
Aqoxy2G02735 Aquilegia oxysepala HOM05D006559 ORTHO05D008867 1.6e-222 776.5 665 60.2
AUR62039288 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.4e-221 773.5 688 56.8
FvH4_4g19640 Fragaria vesca HOM05D006559 ORTHO05D008867 3.0e-221 772.3 661 60.1
DCAR_002509 Daucus carota HOM05D006559 ORTHO05D008867 2.0e-220 769.6 657 60.4
Prupe.1G118000 Prunus persica HOM05D006559 ORTHO05D008867 2.0e-220 769.6 680 60.0
SGA_v2.0_scaffold18G08402 Striga asiatica HOM05D006559 ORTHO05D008867 3.4e-220 768.8 663 59.0
MSTRG.3859 Avicennia marina HOM05D006559 ORTHO05D008867 6.3e-219 764.6 657 60.0
AUR62016199 Chenopodium quinoa HOM05D006559 ORTHO05D008867 2.7e-217 759.2 738 52.8
Oeu032013.1 Olea europaea HOM05D006559 ORTHO05D008867 2.7e-217 759.2 649 62.4
FAN12G1983 Fragaria x ananassa HOM05D006559 ORTHO05D008867 5.9e-217 758.1 673 58.8
ECA246G2012 Erigeron canadensis HOM05D006559 ORTHO05D008867 2.9e-216 755.7 654 59.8
SalBow8G4902 Salvia bowleyana HOM05D006559 ORTHO05D008867 3.0e-213 745.7 646 59.3
THA.LOC104820440 Tarenaya hassleriana HOM05D006559 ORTHO05D008867 7.5e-212 741.1 659 57.8
Lsat_1_v5_gn_6_116281 Lactuca sativa HOM05D006559 ORTHO05D008867 1.6e-209 733.4 662 58.5
Aa31LG8G4060 Aethionema arabicum HOM05D006559 ORTHO05D008867 5.6e-207 724.9 673 55.4
Sp3g15250 Schrenkiella parvula HOM05D006559 ORTHO05D008867 3.4e-204 715.7 670 55.1
AT3G17030 Arabidopsis thaliana HOM05D006559 ORTHO05D008867 1.3e-203 713.8 663 55.2
Carub.0003s1678 Capsella rubella HOM05D006559 ORTHO05D008867 3.2e-202 709.1 672 54.8
EL10Ac3g05493 Beta vulgaris HOM05D006559 ORTHO05D008867 7.0e-202 708.0 690 53.8
Thhalv10020210m.g Eutrema salsugineum HOM05D006559 ORTHO05D008867 1.7e-200 703.4 672 54.5
AL3G30010 Arabidopsis lyrata HOM05D006559 ORTHO05D008867 3.0e-200 702.6 668 54.3
Duzib151G0228 Durio zibethinus HOM05D006559 ORTHO05D008867 1.1e-199 700.7 653 55.3
A01p37300 Brassica napus HOM05D006559 ORTHO05D008867 1.6e-198 696.8 671 54.4
BcaC09g48654 Brassica carinata HOM05D006559 ORTHO05D008867 3.6e-198 695.7 668 54.2
BraA01t03788Z Brassica rapa HOM05D006559 ORTHO05D008867 8.0e-198 694.5 671 54.2
Ah.13g071910 Amaranthus hybridus HOM05D006559 ORTHO05D008867 3.1e-197 692.6 659 55.2
BolC1t04694H Brassica oleracea HOM05D006559 ORTHO05D008867 8.9e-197 691.0 669 54.1
C01p47240 Brassica napus HOM05D006559 ORTHO05D008867 1.2e-196 690.6 669 54.1
Lj6A690G72 Lonicera japonica HOM05D006559 ORTHO05D008867 1.5e-196 690.3 513 68.2
COL.COLO4_34624 Corchorus olitorius HOM05D006559 ORTHO05D008867 4.9e-195 685.3 665 55.2
Atru.chr4.3010 Acer truncatum HOM05D006559 ORTHO05D008867 4.6e-193 678.7 676 56.7
CiPaw.01G113700 Carya illinoinensis HOM05D006559 ORTHO05D008867 2.1e-190 669.8 505 68.3
FAN07G1421 Fragaria x ananassa HOM05D006559 ORTHO05D008867 4.7e-190 668.7 657 54.5
Nitab4.5_0000169g0190 Nicotiana tabacum HOM05D006559 ORTHO05D008867 6.4e-187 658.3 529 64.3
ATR0796G144 Amborella trichopoda HOM05D006559 ORTHO05D008867 5.4e-186 655.2 650 52.9
HanXRQChr08g0236161 Helianthus annuus HOM05D006559 ORTHO05D008867 6.6e-184 648.3 655 55.1
Actinidia40373 Actinidia chinensis HOM05D006559 ORTHO05D008867 1.2e-177 627.5 460 70.0
Os03g0832500 Oryza sativa ssp. japonica HOM05D006559 ORTHO05D008867 4.6e-177 625.5 652 52.0
SHI00146 Sapria himalayana HOM05D006559 ORTHO05D008867 5.6e-175 618.6 669 52.0
Zm00001eb063450 Zea mays HOM05D006559 ORTHO05D008867 5.4e-170 602.1 649 50.1
SEGI_33199 Sequoiadendron giganteum HOM05D006559 ORTHO05D008867 3.3e-167 592.8 662 48.6
Hma1.2p1_0078F.1_g039960 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 1.9e-159 567.0 513 59.6
ClCG00G004240 Citrullus lanatus HOM05D006559 ORTHO05D008867 1.3e-155 554.3 512 60.0
unitig_32.g11851 Utricularia gibba HOM05D006559 ORTHO05D008867 9.3e-154 548.1 628 47.8
HPP92_015242 Vanilla planifolia HOM05D006559 ORTHO05D008867 9.0e-141 505.0 652 44.5
CARHR092280 Cardamine hirsuta HOM05D006559 ORTHO05D008867 4.1e-125 453.0 395 59.0
Mapoly0086s0053 Marchantia polymorpha HOM05D006559 ORTHO05D008867 2.2e-118 430.6 645 38.6
AagrBONN_evm.TU.Sc2ySwM_344.4908 Anthoceros agrestis HOM05D006559 ORTHO05D008867 3.7e-110 403.3 659 37.2
RcHm_v2.0_Chr4g0424931 Rosa chinensis HOM05D006559 ORTHO05D008867 3.5e-100 370.2 398 53.0
TPR.G16835 Trifolium pratense HOM05D006559 ORTHO05D008867 1.0e-88 332.0 624 38.9
TAR365G1053 Trochodendron aralioides HOM05D006559 ORTHO05D008867 2.2e-86 324.3 240 69.6
SMO116G0303 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 1.5e-74 285.0 464 39.4
SMO239G0200 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 1.1e-66 258.8 547 35.5
AUR62035935 Chenopodium quinoa HOM05D006559 ORTHO05D008867 7.4e-50 203.0 230 46.5
AUR62044438 Chenopodium quinoa HOM05D006559 ORTHO05D008867 6.4e-46 189.9 183 50.8
Hma1.2p1_0078F.1_g039980 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 4.0e-40 170.6 144 56.9
SMO195G0016 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 8.7e-35 152.9 404 31.4
AUR62038912 Chenopodium quinoa HOM05D006559 ORTHO05D008867 7.4e-34 149.8 237 36.3
Actinidia27128 Actinidia chinensis HOM05D006559 ORTHO05D008867 1.4e-32 145.6 93 76.3
Cc03_g00880 Coffea canephora HOM05D006559 ORTHO05D008867 8.7e-27 126.3 88 72.7
Lj6A690T73 Lonicera japonica HOM05D006559 ORTHO05D008867 7.4e-26 123.2 92 63.0
RcHm_v2.0_Chr4g0425081 Rosa chinensis HOM05D006559 ORTHO05D008867 1.2e-23 115.9 113 51.3
MBI14_g17950_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D241410 7.7e-23 113.2 150 42.7
RcHm_v2.0_Chr4g0425061 Rosa chinensis HOM05D006559 ORTHO05D008867 6.5e-22 110.2 114 53.5
RcHm_v2.0_Chr3g0458131 Rosa chinensis HOM05D006559 ORTHO05D050582 1.3e-14 85.9 75 60.0
Potri.008G105850 Populus trichocarpa HOM05D006559 ORTHO05D050582 5.5e-13 80.5 66 60.6
RcHm_v2.0_Chr4g0425071 Rosa chinensis HOM05D006559 ORTHO05D343184 6.1e-12 77.0 65 55.4
BcaB04g20870 Brassica carinata HOM05D006559 ORTHO05D019951 7.4e-10 70.1 81 48.1
BcaC01g05501 Brassica carinata HOM05D006559 ORTHO05D019951 1.1e-08 66.2 83 44.6
Glyma.14G110000 Glycine max HOM05D006559 ORTHO05D214058 5.9e-07 60.5 36 83.3


User provided reference genes

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