Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G112500 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 2.5e-83 312.8 199 100.0
VMungo1215G2482 Vigna mungo HOM05D001765 ORTHO05D005876 5.5e-70 268.5 155 92.9
Ca_21450_v3 Cicer arietinum L. HOM05D001765 ORTHO05D005876 1.3e-68 263.8 198 75.8
Glyma.17G032500 Glycine max HOM05D001765 ORTHO05D005876 6.7e-68 261.5 154 92.9
Glyma.07G241300 Glycine max HOM05D001765 ORTHO05D005876 1.3e-66 257.3 154 91.6
Lalb_Chr13g0298421 Lupinus albus HOM05D001765 ORTHO05D005876 3.7e-66 255.8 153 89.5
Lalb_Chr07g0182091 Lupinus albus HOM05D001765 ORTHO05D005876 3.2e-62 242.7 150 88.0
CiPaw.02G075900 Carya illinoinensis HOM05D001765 ORTHO05D005876 2.1e-61 240.0 199 80.4
Manes.03G202700 Manihot esculenta HOM05D001765 ORTHO05D005876 7.9e-61 238.0 155 83.9
FvH4_4g19461 Fragaria vesca HOM05D001765 ORTHO05D005876 1.4e-60 237.3 199 76.9
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 1.8e-60 236.9 195 82.1
Prupe.1G122100 Prunus persica HOM05D001765 ORTHO05D005876 3.0e-60 236.1 199 74.9
FAN07G0091 Fragaria x ananassa HOM05D001765 ORTHO05D005876 8.8e-60 234.6 199 77.9
Cpa.g.sc9.87 Carica papaya HOM05D001765 ORTHO05D005876 1.1e-59 234.2 198 72.2
TPR.G16856 Trifolium pratense HOM05D001765 ORTHO05D005876 1.1e-59 234.2 143 88.1
TWI09G0718 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 1.5e-59 233.8 194 74.7
MD13G1156300 Malus domestica HOM05D001765 ORTHO05D005876 2.0e-59 233.4 199 75.4
VMungo0647G0513 Vigna mungo HOM05D000091 ORTHO05D005533 2.6e-59 233.0 140 89.3
Atru.chr4.3029 Acer truncatum HOM05D001765 ORTHO05D005876 7.4e-59 231.5 198 74.7
Haze_01276 Corylus avellana HOM05D001765 ORTHO05D005876 7.4e-59 231.5 192 82.3
TWI73G0761 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 1.3e-58 230.7 195 80.0
arahy.Tifrunner.gnm1.ann1.03CYAA Arachis hypogaea HOM05D001765 ORTHO05D005876 2.2e-58 229.9 133 91.7
TAR365G0409 Trochodendron aralioides HOM05D001765 ORTHO05D005876 2.8e-58 229.6 199 76.4
Prupe.1G073200 Prunus persica HOM05D001765 ORTHO05D005876 3.7e-58 229.2 199 72.9
Ciclev10005673m.g Citrus clementina HOM05D001765 ORTHO05D005876 4.8e-58 228.8 153 82.4
Phvul.008G245800 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 4.8e-58 228.8 142 88.0
Phvul.009G074533 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 4.8e-58 228.8 142 88.0
Duzib052G0074 Durio zibethinus HOM05D001765 ORTHO05D005876 6.3e-58 228.4 197 79.2
CDE12G0657 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 2.4e-57 226.5 152 79.6
Gohir.A10G171300 Gossypium hirsutum HOM05D001765 ORTHO05D005876 2.4e-57 226.5 198 77.3
Thecc.04G297600 Theobroma cacao HOM05D001765 ORTHO05D005876 2.4e-57 226.5 194 81.4
Gohir.A09G065500 Gossypium hirsutum HOM05D001765 ORTHO05D005876 4.1e-57 225.7 152 82.2
Gorai.011G199400 Gossypium raimondii HOM05D001765 ORTHO05D005876 4.1e-57 225.7 198 79.8
Gorai.006G079200 Gossypium raimondii HOM05D001765 ORTHO05D005876 6.9e-57 224.9 152 82.2
MD16G1157200 Malus domestica HOM05D001765 ORTHO05D005876 1.2e-56 224.2 153 81.0
Nn4g25612 Nelumbo nucifera HOM05D001765 ORTHO05D005876 1.5e-56 223.8 143 83.9
Potri.010G142400 Populus trichocarpa HOM05D001765 ORTHO05D005876 1.5e-56 223.8 194 76.8
ClCG06G004640 Citrullus lanatus HOM05D001765 ORTHO05D005876 2.0e-56 223.4 143 85.3
Sabra08G0081000 Salix brachista HOM05D001765 ORTHO05D005876 2.0e-56 223.4 147 82.3
Gohir.D09G064400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 2.6e-56 223.0 152 81.6
TAR633G2429 Trochodendron aralioides HOM05D001765 ORTHO05D005876 2.6e-56 223.0 199 71.4
Sabra10G0110100 Salix brachista HOM05D001765 ORTHO05D005876 3.4e-56 222.6 198 78.3
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 4.5e-56 222.2 197 67.0
Gohir.D10G178400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 4.5e-56 222.2 198 79.3
MBI19_g07244_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 4.5e-56 222.2 203 69.0
COL.COLO4_11257 Corchorus olitorius HOM05D001765 ORTHO05D005876 5.9e-56 221.9 198 68.7
MELO3C023334.2 Cucumis melo HOM05D001765 ORTHO05D005876 7.7e-56 221.5 133 91.0
CsaV3_2G015100 Cucumis sativus L. HOM05D001765 ORTHO05D005876 1.0e-55 221.1 133 91.0
QL06p011625 Quercus lobata HOM05D001765 ORTHO05D005876 1.0e-55 221.1 152 82.2
Sed0022335 Sechium edule HOM05D001765 ORTHO05D005876 1.0e-55 221.1 143 83.2
Nn3g21679 Nelumbo nucifera HOM05D001765 ORTHO05D005876 1.3e-55 220.7 143 81.1
Psat4g024600 Pisum sativum HOM05D001765 ORTHO05D005876 1.3e-55 220.7 154 80.5
Potri.008G107100 Populus trichocarpa HOM05D001765 ORTHO05D005876 1.3e-55 220.7 194 78.4
Cc03_g00980 Coffea canephora HOM05D001765 ORTHO05D005876 2.9e-55 219.5 195 76.9
Lj4g0023600 Lotus japonicus HOM05D001765 ORTHO05D005876 3.8e-55 219.2 197 79.7
Solyc01g060030.3 Solanum lycopersicum HOM05D001765 ORTHO05D005876 3.8e-55 219.2 197 75.6
Sopen01g026230 Solanum pennellii HOM05D001765 ORTHO05D005876 3.8e-55 219.2 197 75.1
THA.LOC104818892 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 3.8e-55 219.2 152 80.3
CiPaw.01G139800 Carya illinoinensis HOM05D001765 ORTHO05D005876 5.0e-55 218.8 195 70.3
Duzib151G0385 Durio zibethinus HOM05D001765 ORTHO05D005876 5.0e-55 218.8 152 81.6
CANSAT78G1829 Cannabis sativa HOM05D001765 ORTHO05D005876 6.5e-55 218.4 152 80.9
Actinidia40362 Actinidia chinensis HOM05D001765 ORTHO05D005876 1.4e-54 217.2 198 69.7
Peaxi162Scf00065g00002 Petunia axillaris HOM05D001765 ORTHO05D005876 1.9e-54 216.9 199 75.9
Lj6P689T37 Lonicera japonica HOM05D001765 ORTHO05D005876 2.5e-54 216.5 199 76.4
Sc13g0006420 Simmondsia chinensis HOM05D001765 ORTHO05D005876 2.5e-54 216.5 153 80.4
vmacro08062 Vaccinium macrocarpon HOM05D001765 ORTHO05D005876 2.5e-54 216.5 202 70.8
ATR0706G059 Amborella trichopoda HOM05D001765 ORTHO05D005876 3.2e-54 216.1 142 79.6
CSS0034555 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 3.2e-54 216.1 198 70.7
CAN.G874.72 Capsicum annuum HOM05D001765 ORTHO05D005876 5.5e-54 215.3 200 76.0
Ciclev10016311m.g Citrus clementina HOM05D001765 ORTHO05D005876 5.5e-54 215.3 133 88.7
SEGI_21194 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 5.5e-54 215.3 142 80.3
SEGI_31674 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 5.5e-54 215.3 142 80.3
Dinv44303 Davidia involucrata HOM05D001765 ORTHO05D005876 7.2e-54 214.9 153 77.8
RcHm_v2.0_Chr4g0424571 Rosa chinensis HOM05D001765 ORTHO05D005876 7.2e-54 214.9 199 76.9
AUR62037504 Chenopodium quinoa HOM05D001765 ORTHO05D005876 9.4e-54 214.5 155 78.1
Hma1.2p1_0078F.1_g040010 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 9.4e-54 214.5 142 80.3
PGR031G3587 Punica granatum HOM05D001765 ORTHO05D005876 1.2e-53 214.2 152 78.3
Sed0021764 Sechium edule HOM05D001765 ORTHO05D005876 1.2e-53 214.2 130 90.0
THA.LOC104802705 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 1.2e-53 214.2 156 76.3
EL10Ac4g08905 Beta vulgaris HOM05D001765 ORTHO05D005876 1.6e-53 213.8 158 75.9
Ah.04g162900 Amaranthus hybridus HOM05D001765 ORTHO05D005876 3.6e-53 212.6 152 78.9
AUR62004747 Chenopodium quinoa HOM05D001765 ORTHO05D005876 3.6e-53 212.6 132 88.6
Hma1.2p1_0013F.1_g008730 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 4.7e-53 212.2 153 76.5
SGA_v2.0_scaffold119G32663 Striga asiatica HOM05D001765 ORTHO05D005876 4.7e-53 212.2 147 79.6
Nitab4.5_0000456g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 7.9e-53 211.5 196 73.5
BcaC03g17719 Brassica carinata HOM05D001765 ORTHO05D005876 1.0e-52 211.1 156 76.3
C02p57300 Brassica napus HOM05D001765 ORTHO05D003527 1.0e-52 211.1 202 73.3
BolC2t11799H Brassica oleracea HOM05D001765 ORTHO05D003527 1.0e-52 211.1 202 73.3
CSS0002630 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 1.0e-52 211.1 155 77.4
unitig_749.g13366 Utricularia gibba HOM05D001765 ORTHO05D005876 1.0e-52 211.1 157 76.4
A02p38130 Brassica napus HOM05D001765 ORTHO05D003527 1.4e-52 210.7 202 73.8
Eucgr.A00351 Eucalyptus grandis HOM05D001765 ORTHO05D005876 2.3e-52 209.9 154 75.3
CARHR182130 Cardamine hirsuta HOM05D001765 ORTHO05D005876 3.9e-52 209.1 154 77.9
Oeu063485.1 Olea europaea HOM05D001765 ORTHO05D005876 3.9e-52 209.1 153 76.5
Thhalv10004753m.g Eutrema salsugineum HOM05D001765 ORTHO05D005876 8.8e-52 208.0 162 75.3
Sp2g19740 Schrenkiella parvula HOM05D001765 ORTHO05D005876 8.8e-52 208.0 154 77.3
SpUn0021_0110 Schrenkiella parvula HOM05D001765 ORTHO05D005876 8.8e-52 208.0 154 77.3
Aqoxy1G02157 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 1.1e-51 207.6 155 74.2
Nitab4.5_0000276g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.1e-51 207.6 196 72.4
Nitab4.5_0004323g0040 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.1e-51 207.6 194 74.7
Nitab4.5_0010629g0030 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.5e-51 207.2 197 76.1
Aa31LG11G7990 Aethionema arabicum HOM05D001765 ORTHO05D005876 4.4e-51 205.7 152 75.7
PSO210G5285 Papaver somniferum HOM05D001765 ORTHO05D005876 4.4e-51 205.7 156 72.4
Aqoxy5G01535 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 1.3e-50 204.1 155 73.5
BolC7t44518H Brassica oleracea HOM05D001765 ORTHO05D005876 1.7e-50 203.8 153 75.2
CDE01G0626 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 1.7e-50 203.8 155 72.3
Migut.N00048 Erythranthe guttata HOM05D001765 ORTHO05D005876 1.7e-50 203.8 142 77.5
PSO761G0153 Papaver somniferum HOM05D001765 ORTHO05D005876 1.7e-50 203.8 156 73.1
BcaNung02601 Brassica carinata HOM05D001765 ORTHO05D005876 2.2e-50 203.4 153 75.2
C07p39890 Brassica napus HOM05D001765 ORTHO05D005876 2.2e-50 203.4 153 75.2
BcaC06g30699 Brassica carinata HOM05D001765 ORTHO05D005876 2.8e-50 203.0 159 74.2
Oeu001465.1 Olea europaea HOM05D001765 ORTHO05D005876 2.8e-50 203.0 153 73.9
Rhsim04G0234200 Rhododendron simsii HOM05D001765 ORTHO05D005876 2.8e-50 203.0 200 70.5
A06p38370 Brassica napus HOM05D001765 ORTHO05D005876 3.7e-50 202.6 159 73.6
BraA06t26751Z Brassica rapa HOM05D001765 ORTHO05D005876 3.7e-50 202.6 159 73.6
MSTRG.21776 Avicennia marina HOM05D001765 ORTHO05D005876 4.8e-50 202.2 155 74.2
DCAR_002506 Daucus carota HOM05D001765 ORTHO05D005876 6.3e-50 201.8 153 75.8
AT5G49400 Arabidopsis thaliana HOM05D001765 ORTHO05D005876 1.1e-49 201.1 147 78.2
Carub.0008s0928 Capsella rubella HOM05D001765 ORTHO05D005876 3.1e-49 199.5 159 73.0
AL8G23110 Arabidopsis lyrata HOM05D001765 ORTHO05D005876 1.2e-48 197.6 145 76.6
BraA02t08788Z Brassica rapa HOM05D001765 ORTHO05D005876 1.6e-48 197.2 147 76.9
HanXRQChr05g0145931 Helianthus annuus HOM05D001765 ORTHO05D005876 1.6e-48 197.2 154 74.7
ECA246G2338 Erigeron canadensis HOM05D001765 ORTHO05D005876 2.0e-48 196.8 152 76.3
Aqoxy5G02976 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 7.7e-48 194.9 143 74.8
Lsat_1_v5_gn_6_116901 Lactuca sativa HOM05D001765 ORTHO05D005876 2.2e-47 193.4 152 73.7
Os11g0199600 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D005876 2.9e-47 193.0 130 81.5
Pp3c14_13970 Physcomitrium patens HOM05D001765 ORTHO05D005876 1.9e-46 190.3 144 74.3
AagrBONN_evm.TU.Sc2ySwM_362.810 Anthoceros agrestis HOM05D001765 ORTHO05D005876 4.2e-46 189.1 159 69.8
Mapoly0023s0038 Marchantia polymorpha HOM05D001765 ORTHO05D005876 2.7e-45 186.4 142 76.1
Zm00001eb109890 Zea mays HOM05D001765 ORTHO05D005876 6.1e-45 185.3 140 72.1
Zm00001eb328920 Zea mays HOM05D001765 ORTHO05D005876 5.2e-44 182.2 140 71.4
BcaB07g34154 Brassica carinata HOM05D001765 ORTHO05D005876 2.0e-43 180.3 133 77.4
Manes.15G005450 Manihot esculenta HOM05D001765 ORTHO05D005876 8.2e-42 174.9 132 72.7
Mapoly0171s0012 Marchantia polymorpha HOM05D001765 ORTHO05D005876 2.0e-40 170.2 133 69.9
Pp3c14_17690 Physcomitrium patens HOM05D001765 ORTHO05D005876 2.7e-40 169.9 139 64.7
Nitab4.5_0004323g0070 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.9e-38 163.7 114 80.7
AagrBONN_evm.TU.Sc2ySwM_228.5656 Anthoceros agrestis HOM05D001765 ORTHO05D005876 2.1e-37 160.2 121 76.0
MBI19_g17409_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 3.5e-32 142.9 203 54.7
CBR_g53494 Chara braunii HOM05D000188 ORTHO05D005876 1.7e-31 140.6 150 57.3
SMO340G0272 Selaginella moellendorffii HOM05D001765 ORTHO05D005876 2.9e-31 139.8 132 56.8
GSVIVG01035017001 Vitis vinifera HOM05D001765 ORTHO05D005876 2.9e-31 139.8 84 95.2
Zm00001eb091100 Zea mays HOM05D001765 ORTHO05D005876 4.2e-30 136.0 127 60.6
Zm00001eb276930 Zea mays HOM05D001765 ORTHO05D005876 9.5e-30 134.8 108 69.4
SEGI_08255 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 9.8e-27 124.8 135 55.6
HanXRQChr13g0395311 Helianthus annuus HOM05D001765 ORTHO05D005876 4.5e-24 115.9 107 60.7
Lsat_1_v5_gn_6_18261 Lactuca sativa HOM05D001765 ORTHO05D005876 6.6e-23 112.1 128 53.9
Medtr1g032030 Medicago truncatula HOM05D001765 ORTHO05D005876 1.2e-21 107.8 90 71.1
Medtr1g032370 Medicago truncatula HOM05D001765 ORTHO05D005876 1.2e-21 107.8 90 71.1
ECA233G0063 Erigeron canadensis HOM05D001765 ORTHO05D005876 2.1e-21 107.1 143 50.3
ATR1159G054 Amborella trichopoda HOM05D001765 ORTHO05D005876 2.6e-19 100.1 77 59.7
Zm00001eb408400 Zea mays HOM05D001765 ORTHO05D005876 2.6e-19 100.1 86 69.8
CAN.G201.7 Capsicum annuum HOM05D001765 ORTHO05D005876 9.8e-19 98.2 201 51.2
CAN.G197.3 Capsicum annuum HOM05D001765 ORTHO05D005876 2.0e-16 90.5 72 73.6
ATR1159G071 Amborella trichopoda HOM05D001765 ORTHO05D005876 4.6e-16 89.4 66 84.8
ATR1159G066 Amborella trichopoda HOM05D001765 ORTHO05D005876 6.6e-15 85.5 64 81.2
Cre12.g529200 Chlamydomonas reinhardtii HOM05D001765 ORTHO05D005876 1.3e-07 61.2 59 45.8


User provided reference genes

Program Settings