Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G105800 Phaseolus vulgaris HOM05D007342 ORTHO05D009252 0.0e+00 1147.5 617 100.0
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 1.8e-249 865.9 623 77.5
Glyma.07G247200 Glycine max HOM05D007342 ORTHO05D009252 4.5e-171 605.5 624 58.8
Glyma.17G026800 Glycine max HOM05D007342 ORTHO05D009252 2.0e-155 553.5 622 57.2
Lj4g0010877 Lotus japonicus HOM05D007342 ORTHO05D009252 1.1e-145 521.2 636 52.8
Lalb_Chr12g0196601 Lupinus albus HOM05D007342 ORTHO05D009252 2.0e-118 430.6 629 47.9
Medtr4g119920 Medicago truncatula HOM05D007342 ORTHO05D009252 7.0e-116 422.2 631 48.3
TPR.G3194 Trifolium pratense HOM05D007342 ORTHO05D009252 1.5e-110 404.4 617 47.3
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 7.8e-107 392.1 585 48.0
arahy.Tifrunner.gnm1.ann1.4CZB08 Arachis hypogaea HOM05D007342 ORTHO05D009252 5.1e-106 389.4 609 46.3
arahy.Tifrunner.gnm1.ann1.0PW7WM Arachis hypogaea HOM05D007342 ORTHO05D009252 7.1e-100 369.0 613 45.0
Psat4g027440 Pisum sativum HOM05D007342 ORTHO05D009252 3.2e-84 317.0 711 38.0
Cfa015389 Carpinus fangiana HOM05D007342 ORTHO05D009252 1.7e-69 268.1 618 38.3
TWI53G0473 Tripterygium wilfordii HOM05D007342 ORTHO05D009252 3.8e-69 266.9 604 37.1
Haze_01197 Corylus avellana HOM05D007342 ORTHO05D009252 7.1e-68 262.7 625 37.4
Prupe.1G135700 Prunus persica HOM05D007342 ORTHO05D009252 1.6e-67 261.5 592 37.7
MD13G1168100 Malus domestica HOM05D007342 ORTHO05D009252 1.3e-66 258.5 631 34.4
Duzib212G0754 Durio zibethinus HOM05D007342 ORTHO05D009252 5.1e-66 256.5 604 35.9
Potri.008G222000 Populus trichocarpa HOM05D007342 ORTHO05D009252 1.1e-65 255.4 617 36.1
QL06p008994 Quercus lobata HOM05D007342 ORTHO05D009252 2.1e-64 251.1 596 35.9
RcHm_v2.0_Chr4g0422351 Rosa chinensis HOM05D007342 ORTHO05D009252 2.0e-62 244.6 631 35.0
ClCG06G005120 Citrullus lanatus HOM05D007342 ORTHO05D009252 3.4e-62 243.8 616 36.2
Gorai.006G262500 Gossypium raimondii HOM05D007342 ORTHO05D009252 3.8e-61 240.4 620 33.9
Sabra08G0152900 Salix brachista HOM05D007342 ORTHO05D009252 6.5e-61 239.6 604 36.1
FvH4_4g18220 Fragaria vesca HOM05D007342 ORTHO05D009252 3.5e-59 233.8 628 34.1
FAN12G3549 Fragaria x ananassa HOM05D007342 ORTHO05D009252 3.5e-59 233.8 628 34.1
CANSAT78G2360 Cannabis sativa HOM05D007342 ORTHO05D009252 7.9e-59 232.6 647 34.2
FAN12G0202 Fragaria x ananassa HOM05D007342 ORTHO05D009252 7.9e-59 232.6 628 33.9
Ciclev10004639m.g Citrus clementina HOM05D007342 ORTHO05D009252 3.0e-58 230.7 648 32.6
MELO3C021329.2 Cucumis melo HOM05D007342 ORTHO05D009252 1.1e-57 228.8 611 33.6
Cpa.g.sc16.174 Carica papaya HOM05D007342 ORTHO05D009252 4.3e-57 226.9 601 34.1
FAN17G1678 Fragaria x ananassa HOM05D007342 ORTHO05D009252 4.3e-57 226.9 601 33.9
GSVIVG01017735001 Vitis vinifera HOM05D007342 ORTHO05D009252 7.4e-57 226.1 621 34.3
Thecc.04G285100 Theobroma cacao HOM05D007342 ORTHO05D009252 1.1e-55 222.2 612 32.5
CiPaw.01G148300 Carya illinoinensis HOM05D007342 ORTHO05D009252 3.4e-54 217.2 437 40.3
Gohir.D09G239700 Gossypium hirsutum HOM05D007342 ORTHO05D009252 1.3e-53 215.3 621 32.4
Actinidia00019 Actinidia chinensis HOM05D007342 ORTHO05D009252 2.5e-52 211.1 653 34.3
MSTRG.10096 Avicennia marina HOM05D007342 ORTHO05D009252 4.2e-52 210.3 623 32.3
Nn4g25834 Nelumbo nucifera HOM05D007342 ORTHO05D009252 1.6e-51 208.4 698 31.1
Dinv29744 Davidia involucrata HOM05D007342 ORTHO05D009252 3.6e-51 207.2 628 33.0
Eucgr.B01323 Eucalyptus grandis HOM05D007342 ORTHO05D009252 1.4e-50 205.3 607 33.8
Actinidia14301 Actinidia chinensis HOM05D007342 ORTHO05D009252 2.3e-50 204.5 650 33.5
COL.COLO4_13866 Corchorus olitorius HOM05D007342 ORTHO05D009252 2.3e-50 204.5 607 32.8
Sopen01g030760 Solanum pennellii HOM05D007342 ORTHO05D009252 3.1e-47 194.1 694 32.0
PGR031G1889 Punica granatum HOM05D007342 ORTHO05D009252 2.0e-46 191.4 630 32.7
Cc03_g01870 Coffea canephora HOM05D007342 ORTHO05D009252 2.6e-46 191.0 629 31.5
Aqoxy5G00727 Aquilegia oxysepala HOM05D007342 ORTHO05D009252 8.5e-45 186.0 642 29.3
Lalb_Chr07g0177731 Lupinus albus HOM05D007342 ORTHO05D009252 1.4e-44 185.3 226 50.9
PGSC0003DMG400006281 Solanum tuberosum HOM05D007342 ORTHO05D009252 1.4e-44 185.3 683 30.7
CARHR290340 Cardamine hirsuta HOM05D007342 ORTHO05D009252 3.2e-44 184.1 551 32.3
Peaxi162Scf01123g00234 Petunia axillaris HOM05D007342 ORTHO05D009252 2.1e-43 181.4 606 33.0
CSS0019788 Camellia sinensis var. sinensis HOM05D007342 ORTHO05D009252 1.1e-41 175.6 629 32.1
Atru.chr4.2846 Acer truncatum HOM05D007342 ORTHO05D009252 1.5e-41 175.3 568 31.0
Gohir.A09G238800 Gossypium hirsutum HOM05D007342 ORTHO05D009252 5.7e-41 173.3 573 31.2
Carub.0007s2583 Capsella rubella HOM05D007342 ORTHO05D009252 9.7e-41 172.6 631 30.3
Solyc01g080760.4 Solanum lycopersicum HOM05D007342 ORTHO05D009252 9.7e-41 172.6 683 30.2
Migut.G00157 Erythranthe guttata HOM05D007342 ORTHO05D009252 1.7e-40 171.8 607 31.5
Nitab4.5_0000191g0200 Nicotiana tabacum HOM05D007342 ORTHO05D009252 2.2e-40 171.4 712 29.4
Manes.03G195600 Manihot esculenta HOM05D007342 ORTHO05D009252 2.8e-40 171.0 566 32.5
Nitab4.5_0000059g0470 Nicotiana tabacum HOM05D007342 ORTHO05D009252 2.8e-40 171.0 707 30.0
TAR633G2120 Trochodendron aralioides HOM05D007342 ORTHO05D009252 4.8e-40 170.2 249 42.6
PSO210G2737 Papaver somniferum HOM05D007342 ORTHO05D009252 1.8e-39 168.3 630 31.4
AL7G39470 Arabidopsis lyrata HOM05D007342 ORTHO05D009252 4.1e-39 167.2 596 31.2
Sp7g14200 Schrenkiella parvula HOM05D007342 ORTHO05D009252 9.1e-39 166.0 603 31.0
Thhalv10025032m.g Eutrema salsugineum HOM05D007342 ORTHO05D009252 1.2e-38 165.6 591 30.8
THA.LOC104820266 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 4.5e-38 163.7 602 29.9
AT4G15820 Arabidopsis thaliana HOM05D007342 ORTHO05D009252 2.2e-37 161.4 560 31.8
BraA03t14036Z Brassica rapa HOM05D007342 ORTHO05D009252 2.9e-37 161.0 589 30.4
ECA240G4261 Erigeron canadensis HOM05D007342 ORTHO05D009252 3.8e-37 160.6 641 29.8
BcaC06g33445 Brassica carinata HOM05D007342 ORTHO05D009252 2.5e-36 157.9 593 30.5
C07p47420 Brassica napus HOM05D007342 ORTHO05D009252 2.5e-36 157.9 593 30.5
BolC7t45269H Brassica oleracea HOM05D007342 ORTHO05D009252 2.5e-36 157.9 593 30.5
A03p49350 Brassica napus HOM05D007342 ORTHO05D009252 3.6e-35 154.1 589 31.4
Lsat_1_v5_gn_5_56841 Lactuca sativa HOM05D007342 ORTHO05D009252 6.1e-35 153.3 598 30.8
Hund19378 Selenicereus undatus HOM05D007342 ORTHO05D009252 4.4e-33 147.1 639 29.3
PSO832G2203 Papaver somniferum HOM05D007342 ORTHO05D009252 7.5e-33 146.4 503 32.0
AUR62020686 Chenopodium quinoa HOM05D007342 ORTHO05D009252 1.8e-31 141.7 647 27.7
Aa31LG10G6280 Aethionema arabicum HOM05D007342 ORTHO05D009252 4.1e-31 140.6 614 26.7
MBI18_g13693_MAGBIO Magnolia biondii HOM05D007342 ORTHO05D009252 2.0e-30 138.3 516 29.8
DCAR_023285 Daucus carota HOM05D007342 ORTHO05D009252 3.5e-30 137.5 629 30.0
AUR62028039 Chenopodium quinoa HOM05D007342 ORTHO05D009252 7.7e-30 136.3 656 26.5
SGA_v2.0_scaffold67G22631 Striga asiatica HOM05D007342 ORTHO05D009252 7.7e-30 136.3 611 28.8
SalBow2G3523 Salvia bowleyana HOM05D007342 ORTHO05D009252 1.5e-28 132.1 593 31.4
unitig_37.g12398 Utricularia gibba HOM05D007342 ORTHO05D009252 3.2e-28 131.0 610 30.5
vmacro15234 Vaccinium macrocarpon HOM05D007342 ORTHO05D009252 4.2e-28 130.6 624 29.8
Sc19g0005330 Simmondsia chinensis HOM05D007342 ORTHO05D009252 6.1e-27 126.7 576 28.0
THA.LOC104820268 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 8.0e-27 126.3 121 52.9
BcaC06g32967 Brassica carinata HOM05D007342 ORTHO05D009252 1.0e-26 125.9 188 39.9
MBI18_g13694_MAGBIO Magnolia biondii HOM05D007342 ORTHO05D009252 6.8e-26 123.2 709 26.1
Oeu045723.1 Olea europaea HOM05D007342 ORTHO05D009252 5.7e-25 120.2 263 36.1
Rhsim02G0008900 Rhododendron simsii HOM05D007342 ORTHO05D009252 4.8e-24 117.1 649 27.0
ATR0796G152 Amborella trichopoda HOM05D007342 ORTHO05D009252 3.1e-23 114.4 131 48.9
CDE02G3410 Ceratophyllum demersum HOM05D007342 ORTHO05D009252 5.4e-23 113.6 159 40.9
THA.LOC104810667 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 5.9e-22 110.2 103 52.4
THA.LOC104820435 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 1.7e-21 108.6 103 51.5
SEGI_31295 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 5.5e-20 103.6 130 45.4
Sed0007886 Sechium edule HOM05D007342 ORTHO05D009252 1.7e-16 92.0 390 31.8
HPP92_016942 Vanilla planifolia HOM05D007342 ORTHO05D009252 2.2e-16 91.7 270 30.4
DCAR_023500 Daucus carota HOM05D007342 ORTHO05D009252 3.1e-15 87.8 122 45.1
CsaV3_6G022280 Cucumis sativus L. HOM05D007342 ORTHO05D009252 9.2e-15 86.3 401 28.7
VMungo0331G0919 Vigna mungo HOM05D049815 ORTHO05D009252 7.7e-14 83.2 67 71.6
Eucgr.L03117 Eucalyptus grandis HOM05D007342 ORTHO05D009252 8.6e-13 79.7 326 32.8
Pp3c12_1870 Physcomitrium patens HOM05D005676 ORTHO05D007375 1.2e-11 75.9 197 33.5
Lj3P820T26 Lonicera japonica HOM05D007342 ORTHO05D009252 1.6e-11 75.5 406 26.4
Lj3P817T41 Lonicera japonica HOM05D007342 ORTHO05D009252 3.0e-10 71.2 297 27.3
Thecc.01G342000 Theobroma cacao HOM05D005676 ORTHO05D007375 6.8e-10 70.1 120 35.8
FAN03G1248 Fragaria x ananassa HOM05D005676 ORTHO05D007375 8.9e-10 69.7 137 32.8
CsaV3_3G008030 Cucumis sativus L. HOM05D005676 ORTHO05D007375 1.2e-09 69.3 125 34.4
Aa31LG10G15770 Aethionema arabicum HOM05D005676 ORTHO05D007375 1.5e-09 68.9 114 34.2
FvH4_7g16470 Fragaria vesca HOM05D005676 ORTHO05D007375 2.0e-09 68.6 137 32.8
FAN06G1134 Fragaria x ananassa HOM05D005676 ORTHO05D007375 2.0e-09 68.6 137 32.8
FAN06G4290 Fragaria x ananassa HOM05D005676 ORTHO05D007375 2.0e-09 68.6 137 32.8
Mapoly0008s0022 Marchantia polymorpha HOM05D005676 ORTHO05D007375 2.0e-09 68.6 128 35.9
RcHm_v2.0_Chr1g0359591 Rosa chinensis HOM05D005676 ORTHO05D007375 2.6e-09 68.2 137 32.8
MELO3C006021.2 Cucumis melo HOM05D005676 ORTHO05D007375 3.4e-09 67.8 126 34.1
Ah.05g179510 Amaranthus hybridus HOM05D005676 ORTHO05D007375 4.4e-09 67.4 119 31.9
Actinidia10141 Actinidia chinensis HOM05D005676 ORTHO05D007375 5.7e-09 67.0 137 33.6
Sed0007378 Sechium edule HOM05D005676 ORTHO05D007375 5.7e-09 67.0 132 34.1
arahy.Tifrunner.gnm1.ann1.FH2LCI Arachis hypogaea HOM05D005676 ORTHO05D007375 7.5e-09 66.6 132 32.6
EL10Ac1g00264 Beta vulgaris HOM05D005676 ORTHO05D007375 7.5e-09 66.6 126 33.3
CAN.G1415.28 Capsicum annuum HOM05D005676 ORTHO05D007375 7.5e-09 66.6 132 33.3
HanXRQChr11g0352981 Helianthus annuus HOM05D005676 ORTHO05D007375 7.5e-09 66.6 126 34.1
Medtr8g027605 Medicago truncatula HOM05D005676 ORTHO05D007375 7.5e-09 66.6 132 32.6
Psat4g161440 Pisum sativum HOM05D005676 ORTHO05D007375 7.5e-09 66.6 127 33.9
CDE02G4093 Ceratophyllum demersum HOM05D005676 ORTHO05D007375 1.3e-08 65.9 139 30.2
ClCG05G000790 Citrullus lanatus HOM05D005676 ORTHO05D007375 1.3e-08 65.9 119 35.3
arahy.Tifrunner.gnm1.ann1.L1WQQA Arachis hypogaea HOM05D005676 ORTHO05D007375 2.2e-08 65.1 132 31.8
BcaC06g32966 Brassica carinata HOM05D007342 ORTHO05D009252 2.2e-08 65.1 224 33.0
Eucgr.D02379 Eucalyptus grandis HOM05D005676 ORTHO05D007375 2.2e-08 65.1 126 32.5
MD01G1081300 Malus domestica HOM05D005676 ORTHO05D007375 2.2e-08 65.1 126 34.1
SEGI_23777 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 2.2e-08 65.1 100 39.0
AagrBONN_evm.TU.Sc2ySwM_368.2853 Anthoceros agrestis HOM05D005676 ORTHO05D007375 2.9e-08 64.7 130 34.6
Aqoxy7G00081 Aquilegia oxysepala HOM05D005676 ORTHO05D007375 2.9e-08 64.7 125 32.8
Lsat_1_v5_gn_3_140321 Lactuca sativa HOM05D005676 ORTHO05D007375 2.9e-08 64.7 134 30.6
MSTRG.17345 Avicennia marina HOM05D005676 ORTHO05D007375 3.7e-08 64.3 126 32.5
Nitab4.5_0013740g0030 Nicotiana tabacum HOM05D005676 ORTHO05D007375 3.7e-08 64.3 132 32.6
Glyma.16G024100 Glycine max HOM05D005676 ORTHO05D007375 4.9e-08 63.9 132 32.6
Gohir.A11G096900 Gossypium hirsutum HOM05D005676 ORTHO05D007375 4.9e-08 63.9 128 31.2
Nitab4.5_0000172g0490 Nicotiana tabacum HOM05D005676 ORTHO05D007375 6.4e-08 63.5 132 32.6
Cfa003798 Carpinus fangiana HOM05D005676 ORTHO05D007375 8.3e-08 63.2 132 31.8
DCAR_005392 Daucus carota HOM05D005676 ORTHO05D007375 8.3e-08 63.2 192 28.6
Gorai.007G108400 Gossypium raimondii HOM05D005676 ORTHO05D007375 8.3e-08 63.2 128 31.2
PGR031G0643 Punica granatum HOM05D005676 ORTHO05D007375 8.3e-08 63.2 134 32.1
TPR.G16793 Trifolium pratense HOM05D005676 ORTHO05D007375 8.3e-08 63.2 127 33.1
Oeu043238.1 Olea europaea HOM05D005676 ORTHO05D007375 1.1e-07 62.8 124 33.9
Phvul.010G114600 Phaseolus vulgaris HOM05D005676 ORTHO05D007375 1.1e-07 62.8 126 31.7
SalBow6G4948 Salvia bowleyana HOM05D005676 ORTHO05D007375 1.1e-07 62.8 119 33.6
Hund16716 Selenicereus undatus HOM05D005676 ORTHO05D007375 1.4e-07 62.4 127 32.3
Nn1g00247 Nelumbo nucifera HOM05D005676 ORTHO05D007375 1.8e-07 62.0 119 31.1
Sc01g0002640 Simmondsia chinensis HOM05D005676 ORTHO05D007375 1.8e-07 62.0 134 30.6
AT3G61780 Arabidopsis thaliana HOM05D005676 ORTHO05D007375 3.2e-07 61.2 121 29.8
QL04p060782 Quercus lobata HOM05D005676 ORTHO05D007375 3.2e-07 61.2 132 31.1
TAR636G2851 Trochodendron aralioides HOM05D005676 ORTHO05D007375 3.2e-07 61.2 137 32.1
CiPaw.02G041000 Carya illinoinensis HOM05D005676 ORTHO05D007375 4.1e-07 60.8 125 32.0
MD07G1150100 Malus domestica HOM05D005676 ORTHO05D007375 4.1e-07 60.8 126 32.5
unitig_899.g14797 Utricularia gibba HOM05D005676 ORTHO05D007375 5.4e-07 60.5 178 27.0
AUR62023455 Chenopodium quinoa HOM05D005676 ORTHO05D007375 7.0e-07 60.1 126 29.4
MBI06_g46583_MAGBIO Magnolia biondii HOM05D005676 ORTHO05D007375 7.0e-07 60.1 127 30.7
VMungo0331G0849 Vigna mungo HOM05D005676 ORTHO05D007375 7.0e-07 60.1 126 31.0
Duzib268G0021 Durio zibethinus HOM05D005676 ORTHO05D007375 9.2e-07 59.7 128 29.7
ECA246G1832 Erigeron canadensis HOM05D000467 ORTHO05D000379 1.2e-06 59.3 116 31.9
Solyc01g096010.4 Solanum lycopersicum HOM05D005676 ORTHO05D007375 1.2e-06 59.3 133 32.3
THA.LOC104817362 Tarenaya hassleriana HOM05D005676 ORTHO05D007375 2.0e-06 58.5 113 31.0
Atru.chr5.673 Acer truncatum HOM05D005676 ORTHO05D007375 2.7e-06 58.2 120 30.8
Ca_23531_v3 Cicer arietinum L. HOM05D005676 ORTHO05D007375 2.7e-06 58.2 273 26.7
Lj9A598G65 Lonicera japonica HOM05D005676 ORTHO05D007375 2.7e-06 58.2 129 31.0
Thhalv10005757m.g Eutrema salsugineum HOM05D005676 ORTHO05D007375 3.5e-06 57.8 114 28.1
SalBow3G4648 Salvia bowleyana HOM05D005676 ORTHO05D007375 5.9e-06 57.0 119 31.9
Migut.B01876 Erythranthe guttata HOM05D005676 ORTHO05D007375 7.8e-06 56.6 118 31.4
Lj3g0008614 Lotus japonicus HOM05D005676 ORTHO05D007375 7.8e-06 56.6 275 25.1


User provided reference genes

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