Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 1.1e-217 759.6 378 100.0
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 6.1e-187 657.5 378 87.8
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 8.2e-184 647.1 378 86.5
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 3.5e-182 641.7 378 85.2
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 1.2e-166 590.1 383 78.3
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 1.2e-166 590.1 383 77.3
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 2.3e-162 575.9 380 76.3
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 1.1e-159 567.0 381 76.4
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 3.2e-159 565.5 378 74.9
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 1.2e-158 563.5 383 76.0
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 4.0e-154 548.5 371 75.5
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 2.5e-148 529.3 397 67.0
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 5.2e-138 495.0 413 62.5
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 1.2e-137 493.8 398 64.6
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 2.0e-137 493.0 399 63.2
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 3.4e-137 492.3 340 70.3
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 9.9e-137 490.7 403 61.8
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 4.9e-136 488.4 384 64.8
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 1.4e-135 486.9 321 71.7
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 1.4e-135 486.9 399 63.2
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 2.4e-135 486.1 399 63.7
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 2.1e-134 483.0 384 64.8
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 4.6e-134 481.9 369 65.3
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 3.0e-133 479.2 396 63.6
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 6.6e-133 478.0 401 62.3
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 3.3e-132 475.7 388 62.1
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 2.8e-131 472.6 388 61.3
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 2.8e-131 472.6 318 71.1
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 2.4e-130 469.5 399 61.7
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 1.5e-129 466.8 339 67.0
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 7.6e-129 464.5 405 58.3
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 7.6e-129 464.5 392 61.0
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 6.4e-128 461.5 388 60.6
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 1.1e-127 460.7 365 63.3
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 1.6e-126 456.8 330 67.9
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.7e-126 456.1 322 70.5
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 3.5e-126 455.7 322 70.5
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 1.0e-125 454.1 322 69.9
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.3e-125 453.8 392 61.5
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 3.0e-125 452.6 462 54.8
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 8.7e-125 451.1 394 56.9
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 1.9e-124 449.9 317 65.9
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 2.5e-124 449.5 311 71.4
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 4.8e-123 445.3 327 66.4
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 6.2e-123 444.9 397 59.7
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.4e-122 443.0 343 63.3
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 5.3e-122 441.8 324 65.1
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 1.2e-121 440.7 389 56.3
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 2.6e-121 439.5 389 55.3
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 2.6e-121 439.5 340 62.6
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 9.9e-121 437.6 317 64.4
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 2.9e-120 436.0 307 66.1
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 2.9e-120 436.0 388 55.7
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 3.8e-120 435.6 348 64.7
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 6.4e-120 434.9 301 69.8
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 8.4e-120 434.5 382 57.1
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 8.4e-120 434.5 340 62.1
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 8.4e-120 434.5 321 64.8
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 3.2e-119 432.6 353 60.6
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 4.2e-119 432.2 321 64.8
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 5.4e-119 431.8 383 55.9
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 5.4e-119 431.8 383 55.9
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 5.4e-119 431.8 337 62.6
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 7.1e-119 431.4 387 55.3
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 2.1e-118 429.9 392 55.1
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 4.6e-118 428.7 375 57.3
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 7.9e-118 427.9 318 65.4
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 7.9e-118 427.9 392 54.3
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 7.9e-118 427.9 321 64.2
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 1.8e-117 426.8 329 62.0
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 3.0e-117 426.0 303 65.0
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 3.9e-117 425.6 309 63.4
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 3.9e-117 425.6 387 55.3
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 8.7e-117 424.5 320 63.4
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 2.5e-116 422.9 392 54.1
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 4.3e-116 422.2 319 63.3
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 5.6e-116 421.8 391 55.2
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 7.4e-116 421.4 303 66.0
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 1.3e-115 420.6 399 53.6
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 4.8e-115 418.7 319 64.3
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 1.4e-114 417.2 317 63.1
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 1.4e-114 417.2 378 56.1
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 5.3e-114 415.2 319 62.7
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 1.2e-113 414.1 319 62.1
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 5.8e-113 411.8 306 62.4
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 2.4e-111 406.4 331 64.0
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 4.6e-110 402.1 325 60.9
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.1e-108 397.5 329 62.0
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 1.9e-108 396.7 356 57.3
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 4.3e-108 395.6 379 52.8
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 3.7e-107 392.5 325 58.2
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 1.1e-106 391.0 327 58.4
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 1.4e-106 390.6 382 53.4
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 1.4e-106 390.6 328 59.8
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 6.9e-106 388.3 382 53.7
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 1.6e-102 377.1 303 60.7
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 2.7e-102 376.3 380 53.2
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 3.5e-102 375.9 321 57.3
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 6.7e-101 371.7 386 57.3
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 1.1e-100 370.9 318 57.2
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 1.5e-100 370.5 303 59.1
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 8.2e-99 364.8 281 65.1
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 6.9e-98 361.7 405 50.6
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 1.6e-91 340.5 343 49.0
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 1.7e-88 330.5 270 62.6
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 1.0e-85 321.2 339 51.0
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 1.1e-84 317.8 297 52.9
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 9.7e-84 314.7 299 53.8
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 3.1e-82 309.7 334 50.0
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 2.2e-80 303.5 284 58.1
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 3.2e-79 299.7 230 63.0
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 1.2e-78 297.7 268 55.2
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 3.3e-76 289.7 212 64.6
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 3.6e-62 243.0 248 53.6
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 1.1e-58 231.5 259 51.7
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 1.7e-51 207.6 293 39.9
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 5.4e-50 202.6 236 50.4
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 4.9e-43 179.5 132 66.7
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 7.0e-42 175.6 124 71.0
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 9.2e-42 175.3 121 67.8
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 4.7e-38 162.9 179 46.4
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 1.7e-35 154.5 313 29.1
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 9.2e-34 148.7 302 30.1
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 1.3e-32 144.8 76 88.2
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 2.4e-26 124.0 148 40.5
Actinidia40231 Actinidia chinensis HOM05D005247 ORTHO05D006571 1.6e-25 121.3 91 64.8
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 2.1e-25 120.9 102 62.7
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 4.3e-23 113.2 204 35.3
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 7.3e-23 112.5 68 75.0
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 6.8e-21 105.9 142 45.8
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 6.8e-21 105.9 128 45.3
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 2.9e-19 100.5 283 25.1
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.1e-18 98.6 87 59.8
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 2.1e-17 94.4 243 26.7
FAN22G1325 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.2e-14 85.1 70 64.3
Pp3c14_7470 Physcomitrium patens HOM05D005247 ORTHO05D006571 2.0e-12 77.8 299 23.7
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 2.9e-11 73.9 68 51.5
Hund28065 Selenicereus undatus HOM05D000003 ORTHO05D000006 3.5e-09 67.0 136 34.6
Hund28074 Selenicereus undatus HOM05D000003 ORTHO05D000006 3.5e-09 67.0 136 34.6
Eucgr.H03758 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.5e-07 60.8 38 63.2


User provided reference genes

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