Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G098700 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 7.2e-81 303.9 158 100.0
VMungo1215G1281 Vigna mungo HOM05D001921 ORTHO05D001784 1.0e-58 230.3 156 82.7
Glyma.17G021000 Glycine max HOM05D001921 ORTHO05D001784 2.2e-58 229.2 160 75.6
Glyma.07G253400 Glycine max HOM05D001921 ORTHO05D001784 2.8e-53 212.2 160 76.2
Lalb_Chr12g0196391 Lupinus albus HOM05D001921 ORTHO05D001784 2.8e-32 142.5 163 55.2
Ca_21561_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 2.3e-31 139.4 164 56.1
Lj4g0019196 Lotus japonicus HOM05D001921 ORTHO05D001784 4.0e-31 138.7 176 56.2
Lj6g0003156 Lotus japonicus HOM05D001921 ORTHO05D001784 8.9e-31 137.5 198 48.0
Lj6g0019677 Lotus japonicus HOM05D001921 ORTHO05D001784 8.9e-31 137.5 198 48.0
CsaV3_6G005540 Cucumis sativus L. HOM05D001921 ORTHO05D001784 1.3e-29 133.7 205 45.4
MELO3C021383.2 Cucumis melo HOM05D001921 ORTHO05D001784 2.9e-29 132.5 205 44.9
Phvul.006G158900 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 3.2e-28 129.0 199 45.7
Psat4g028640 Pisum sativum HOM05D001921 ORTHO05D001784 3.2e-28 129.0 161 54.0
VMungo0540G1436 Vigna mungo HOM05D001921 ORTHO05D001784 4.1e-28 128.6 198 46.0
Sed0007577 Sechium edule HOM05D001921 ORTHO05D001784 1.2e-27 127.1 199 43.7
CiPaw.02G088800 Carya illinoinensis HOM05D001921 ORTHO05D001784 1.6e-27 126.7 203 42.9
Ca_00585_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 2.0e-27 126.3 203 44.8
ClCG06G005610 Citrullus lanatus HOM05D001921 ORTHO05D001784 2.0e-27 126.3 204 43.1
Cfa015526 Carpinus fangiana HOM05D001921 ORTHO05D001784 1.3e-26 123.6 208 42.8
Haze_01021 Corylus avellana HOM05D001921 ORTHO05D001784 1.3e-26 123.6 207 42.5
Medtr2g020830 Medicago truncatula HOM05D001921 ORTHO05D001784 3.9e-26 122.1 199 45.7
TPR.G28126 Trifolium pratense HOM05D001921 ORTHO05D001784 6.6e-26 121.3 162 52.5
Lalb_Chr15g0087151 Lupinus albus HOM05D001921 ORTHO05D001784 2.5e-25 119.4 199 46.2
Cpa.g.sc16.79 Carica papaya HOM05D001921 ORTHO05D001784 7.3e-25 117.9 205 42.0
Glyma.15G100300 Glycine max HOM05D001921 ORTHO05D001784 9.5e-25 117.5 196 44.4
Lalb_Chr18g0055871 Lupinus albus HOM05D001921 ORTHO05D001784 9.5e-25 117.5 193 45.6
Psat1g185920 Pisum sativum HOM05D001921 ORTHO05D001784 3.6e-24 115.5 209 40.2
Sed0022941 Sechium edule HOM05D001921 ORTHO05D001784 4.7e-24 115.2 181 43.1
QL06p006408 Quercus lobata HOM05D001921 ORTHO05D001784 6.2e-24 114.8 213 39.4
CiPaw.01G156200 Carya illinoinensis HOM05D001921 ORTHO05D001784 8.0e-24 114.4 202 41.6
TPR.G18029 Trifolium pratense HOM05D001921 ORTHO05D001784 8.0e-24 114.4 205 42.0
Glyma.13G212500 Glycine max HOM05D001921 ORTHO05D001784 2.3e-23 112.8 196 43.9
Duzib151G0850 Durio zibethinus HOM05D001921 ORTHO05D001784 3.4e-22 109.0 201 40.8
Nitab4.5_0009936g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 3.4e-22 109.0 175 45.1
Prupe.1G145900 Prunus persica HOM05D001921 ORTHO05D001784 7.5e-22 107.8 199 43.2
CANSAT78G1722 Cannabis sativa HOM05D001921 ORTHO05D001784 9.8e-22 107.5 215 38.1
Nitab4.5_0002295g0070 Nicotiana tabacum HOM05D001921 ORTHO05D001784 9.8e-22 107.5 175 45.1
FvH4_4g16740 Fragaria vesca HOM05D001921 ORTHO05D001784 1.7e-21 106.7 189 43.9
FAN12G2234 Fragaria x ananassa HOM05D001921 ORTHO05D001784 1.7e-21 106.7 189 43.9
FAN12G3386 Fragaria x ananassa HOM05D001921 ORTHO05D001784 1.7e-21 106.7 189 43.9
RcHm_v2.0_Chr4g0420321 Rosa chinensis HOM05D001921 ORTHO05D001784 1.7e-21 106.7 189 42.9
arahy.Tifrunner.gnm1.ann1.288BMH Arachis hypogaea HOM05D001921 ORTHO05D001784 2.2e-21 106.3 213 39.0
arahy.Tifrunner.gnm1.ann1.XA6I97 Arachis hypogaea HOM05D001921 ORTHO05D001784 2.9e-21 105.9 213 38.5
Gohir.D10G163601 Gossypium hirsutum HOM05D001921 ORTHO05D001784 2.9e-21 105.9 204 39.7
Gorai.011G182400 Gossypium raimondii HOM05D001921 ORTHO05D001784 4.9e-21 105.1 204 39.2
FAN17G2860 Fragaria x ananassa HOM05D001921 ORTHO05D001784 8.3e-21 104.4 191 42.9
Gohir.A10G105100 Gossypium hirsutum HOM05D001921 ORTHO05D001784 8.3e-21 104.4 204 39.2
Atru.chr4.2710 Acer truncatum HOM05D001921 ORTHO05D001784 1.4e-20 103.6 187 42.2
THA.LOC104820224 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 1.9e-20 103.2 182 42.3
Gohir.A09G060900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 2.4e-20 102.8 203 39.9
FAN22G2319 Fragaria x ananassa HOM05D001921 ORTHO05D001784 4.1e-20 102.1 189 42.3
Manes.15G019800 Manihot esculenta HOM05D001921 ORTHO05D001784 9.2e-20 100.9 218 37.2
Hma1.2p1_0511F.1_g169240 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 1.6e-19 100.1 199 39.2
Manes.03G188600 Manihot esculenta HOM05D001921 ORTHO05D001784 1.6e-19 100.1 222 38.3
Thecc.04G273300 Theobroma cacao HOM05D001921 ORTHO05D001784 1.6e-19 100.1 200 39.0
FAN07G0769 Fragaria x ananassa HOM05D001921 ORTHO05D001784 3.5e-19 99.0 191 39.8
Duzib212G0985 Durio zibethinus HOM05D001921 ORTHO05D001784 4.6e-19 98.6 203 39.4
TAR636G3386 Trochodendron aralioides HOM05D001921 ORTHO05D001784 4.6e-19 98.6 193 36.8
Peaxi162Scf00769g00001 Petunia axillaris HOM05D001921 ORTHO05D001784 7.8e-19 97.8 172 43.0
Medtr4g118490 Medicago truncatula HOM05D001921 ORTHO05D001784 1.0e-18 97.4 159 46.5
Gorai.006G074600 Gossypium raimondii HOM05D001921 ORTHO05D001784 1.3e-18 97.1 203 38.9
Rhsim02G0016000 Rhododendron simsii HOM05D001921 ORTHO05D001784 1.3e-18 97.1 211 37.0
Gohir.D09G059900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.7e-18 96.7 203 38.9
PGR004G0777 Punica granatum HOM05D001921 ORTHO05D001784 3.9e-18 95.5 204 40.7
DCAR_030578 Daucus carota HOM05D001921 ORTHO05D001784 5.0e-18 95.1 179 41.3
Hma1.2p1_0643F.1_g194540 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 8.6e-18 94.4 203 40.4
PGR031G1199 Punica granatum HOM05D001921 ORTHO05D001784 8.6e-18 94.4 193 38.9
Potri.010G027500 Populus trichocarpa HOM05D001921 ORTHO05D001784 5.6e-17 91.7 216 35.6
Sabra08G0162400 Salix brachista HOM05D001921 ORTHO05D001784 7.3e-17 91.3 217 34.6
TAR362G1200 Trochodendron aralioides HOM05D001921 ORTHO05D001784 1.6e-16 90.1 196 35.7
Oeu037657.1 Olea europaea HOM05D001921 ORTHO05D001784 1.1e-15 87.4 208 33.7
PGSC0003DMG400030765 Solanum tuberosum HOM05D001921 ORTHO05D001784 1.1e-15 87.4 182 36.3
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 1.8e-15 86.7 223 34.1
Sabra10G0013000 Salix brachista HOM05D001921 ORTHO05D001784 3.1e-15 85.9 205 34.6
Oeu022233.1 Olea europaea HOM05D001921 ORTHO05D001784 6.8e-15 84.7 217 34.1
Actinidia00069 Actinidia chinensis HOM05D001921 ORTHO05D001784 1.2e-14 84.0 209 33.5
Aqoxy2G03179 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 1.2e-14 84.0 224 31.7
Solyc06g054470.1 Solanum lycopersicum HOM05D001921 ORTHO05D001784 2.6e-14 82.8 188 37.2
Sopen06g019540 Solanum pennellii HOM05D001921 ORTHO05D001784 2.6e-14 82.8 188 37.2
Oeu032694.1 Olea europaea HOM05D001921 ORTHO05D001784 3.4e-14 82.4 211 33.2
Ciclev10005894m.g Citrus clementina HOM05D001921 ORTHO05D001784 5.8e-14 81.6 207 32.9
Sc15g0003760 Simmondsia chinensis HOM05D001921 ORTHO05D001784 5.8e-14 81.6 163 36.8
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 7.5e-14 81.3 203 33.5
Eucgr.B01216 Eucalyptus grandis HOM05D001921 ORTHO05D001784 9.8e-14 80.9 132 42.4
SGA_v2.0_scaffold142G35647 Striga asiatica HOM05D001921 ORTHO05D001784 9.8e-14 80.9 218 33.0
ATR0580G129 Amborella trichopoda HOM05D001921 ORTHO05D001784 2.9e-13 79.3 186 35.5
Eucgr.H03650 Eucalyptus grandis HOM05D001921 ORTHO05D001784 2.9e-13 79.3 168 39.3
A01p33350 Brassica napus HOM05D001921 ORTHO05D001784 3.7e-13 79.0 175 34.9
BraA01t03453Z Brassica rapa HOM05D001921 ORTHO05D001784 3.7e-13 79.0 175 34.9
Aa31LG8G8240 Aethionema arabicum HOM05D001921 ORTHO05D001784 4.9e-13 78.6 181 37.0
BcaB04g20578 Brassica carinata HOM05D001921 ORTHO05D001784 4.9e-13 78.6 175 34.9
C01p42590 Brassica napus HOM05D001921 ORTHO05D001784 6.4e-13 78.2 175 34.9
BolC1t04216H Brassica oleracea HOM05D001921 ORTHO05D001784 6.4e-13 78.2 175 34.9
BcaC09g49094 Brassica carinata HOM05D001921 ORTHO05D001784 8.3e-13 77.8 175 34.9
SGA_v2.0_scaffold89G27578 Striga asiatica HOM05D001921 ORTHO05D001784 8.3e-13 77.8 193 35.8
AT3G21570 Arabidopsis thaliana HOM05D001921 ORTHO05D001784 1.1e-12 77.4 174 36.2
DCAR_002429 Daucus carota HOM05D001921 ORTHO05D001784 1.1e-12 77.4 220 31.4
DCAR_023282 Daucus carota HOM05D001921 ORTHO05D001784 1.1e-12 77.4 195 37.4
DCAR_027127 Daucus carota HOM05D001921 ORTHO05D001784 1.4e-12 77.0 170 35.3
CAN.G256.2 Capsicum annuum HOM05D001921 ORTHO05D001784 1.9e-12 76.6 191 33.5
unitig_748.g8567 Utricularia gibba HOM05D001921 ORTHO05D001784 3.2e-12 75.9 196 35.2
CAN.G889.1 Capsicum annuum HOM05D001921 ORTHO05D001784 9.2e-12 74.3 229 31.0
MBI19_g25275_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 9.2e-12 74.3 159 36.5
PGSC0003DMG400032113 Solanum tuberosum HOM05D001921 ORTHO05D001784 9.2e-12 74.3 228 31.1
AL3G35680 Arabidopsis lyrata HOM05D001921 ORTHO05D001784 1.2e-11 73.9 175 36.6
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 1.2e-11 73.9 208 33.7
Migut.G00240 Erythranthe guttata HOM05D001921 ORTHO05D001784 1.6e-11 73.6 216 29.6
Aqoxy5G00575 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 2.1e-11 73.2 168 34.5
CARHR097520 Cardamine hirsuta HOM05D001921 ORTHO05D001784 2.1e-11 73.2 162 35.8
Cc03_g02690 Coffea canephora HOM05D001921 ORTHO05D001784 3.5e-11 72.4 254 31.1
Sp3g19600 Schrenkiella parvula HOM05D001921 ORTHO05D001784 6.0e-11 71.6 169 33.7
Sopen01g032320 Solanum pennellii HOM05D001921 ORTHO05D001784 7.8e-11 71.2 227 32.2
Carub.0003s2161 Capsella rubella HOM05D001921 ORTHO05D001784 1.0e-10 70.9 163 33.7
Solyc01g080500.2 Solanum lycopersicum HOM05D001921 ORTHO05D001784 1.0e-10 70.9 228 32.0
Cfa017851 Carpinus fangiana HOM05D001921 ORTHO05D001784 1.7e-10 70.1 51 68.6
unitig_32.g11745 Utricularia gibba HOM05D001921 ORTHO05D001784 1.7e-10 70.1 191 34.6
Nitab4.5_0003070g0060 Nicotiana tabacum HOM05D001921 ORTHO05D001784 3.0e-10 69.3 199 35.2
Actinidia32376 Actinidia chinensis HOM05D001921 ORTHO05D001784 3.9e-10 68.9 199 32.7
Nitab4.5_0000059g0260 Nicotiana tabacum HOM05D001921 ORTHO05D001784 5.1e-10 68.6 200 34.5
SGA_v2.0_scaffold57G20294 Striga asiatica HOM05D001921 ORTHO05D001784 6.6e-10 68.2 214 31.3
HPP92_025281 Vanilla planifolia HOM05D001921 ORTHO05D001784 6.6e-10 68.2 176 34.7
Os01g0384800 Oryza sativa ssp. japonica HOM05D001921 ORTHO05D001784 2.5e-09 66.2 113 39.8
Migut.N00134 Erythranthe guttata HOM05D001921 ORTHO05D001784 7.3e-09 64.7 189 33.3
Cfa010136 Carpinus fangiana HOM05D001921 ORTHO05D001784 1.2e-08 63.9 50 66.0
MD03G1009700 Malus domestica HOM05D001921 ORTHO05D001784 1.6e-08 63.5 81 48.1
CDE11G0807 Ceratophyllum demersum HOM05D001921 ORTHO05D001784 3.6e-08 62.4 175 29.7
Peaxi162Scf00095g00034 Petunia axillaris HOM05D001921 ORTHO05D001784 3.6e-08 62.4 180 33.3
PSO782G1936 Papaver somniferum HOM05D001921 ORTHO05D001784 4.7e-08 62.0 56 60.7
SEGI_33680 Sequoiadendron giganteum HOM05D001921 ORTHO05D001784 1.1e-07 60.8 84 45.2
Thecc.09G018900 Theobroma cacao HOM05D001921 ORTHO05D001784 1.1e-07 60.8 184 28.8
MSTRG.3970 Avicennia marina HOM05D001921 ORTHO05D001784 1.4e-07 60.5 52 65.4
SalBow2G1161 Salvia bowleyana HOM05D001921 ORTHO05D001784 4.0e-07 58.9 98 43.9
SalBow5G1185 Salvia bowleyana HOM05D001921 ORTHO05D001784 5.2e-07 58.5 176 32.4
SalBow5G3126 Salvia bowleyana HOM05D001921 ORTHO05D001784 5.2e-07 58.5 176 32.4
Lalb_Chr07g0179601 Lupinus albus HOM05D001921 ORTHO05D001784 6.8e-07 58.2 166 34.3
Duzib168G1630 Durio zibethinus HOM05D001921 ORTHO05D001784 2.0e-06 56.6 185 30.8
Lsat_1_v5_gn_5_51861 Lactuca sativa HOM05D001921 ORTHO05D001784 5.8e-06 55.1 53 60.4
Manes.16G126400 Manihot esculenta HOM05D001921 ORTHO05D001784 7.6e-06 54.7 184 28.3
Gohir.A06G100200 Gossypium hirsutum HOM05D001921 ORTHO05D001784 9.9e-06 54.3 182 27.5


User provided reference genes

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