Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G098300 Phaseolus vulgaris HOM05D006695 ORTHO05D008239 2.5e-124 448.7 219 100.0
VMungo1215G2645 Vigna mungo HOM05D006695 ORTHO05D008239 4.6e-118 427.9 219 95.4
Glyma.17G020700 Glycine max HOM05D006695 ORTHO05D008239 1.6e-110 402.9 219 89.5
Lj4g0002890 Lotus japonicus HOM05D006695 ORTHO05D008239 2.3e-106 389.0 221 85.5
Medtr4g118420 Medicago truncatula HOM05D006695 ORTHO05D008239 3.1e-106 388.7 219 86.3
TPR.G28124 Trifolium pratense HOM05D006695 ORTHO05D008239 5.2e-106 387.9 216 87.5
Psat4g028960 Pisum sativum HOM05D006695 ORTHO05D008239 8.9e-106 387.1 217 85.7
Lalb_Chr12g0196371 Lupinus albus HOM05D006695 ORTHO05D008239 2.4e-103 379.0 220 83.6
CiPaw.01G156500 Carya illinoinensis HOM05D006695 ORTHO05D008239 5.6e-100 367.9 217 81.6
Prupe.1G146500 Prunus persica HOM05D006695 ORTHO05D008239 4.7e-99 364.8 217 80.6
CsaV3_3G013940 Cucumis sativus L. HOM05D006695 ORTHO05D008239 1.8e-98 362.8 217 80.2
TWI09G1388 Tripterygium wilfordii HOM05D006695 ORTHO05D008239 6.8e-98 360.9 212 80.2
QL06p006240 Quercus lobata HOM05D006695 ORTHO05D008239 3.4e-97 358.6 217 80.2
Sed0007686 Sechium edule HOM05D006695 ORTHO05D008239 3.4e-97 358.6 217 78.3
Actinidia23450 Actinidia chinensis HOM05D006695 ORTHO05D008239 4.4e-97 358.2 214 80.4
CANSAT78G2164 Cannabis sativa HOM05D006695 ORTHO05D008239 5.8e-97 357.8 214 79.9
Cfa015538 Carpinus fangiana HOM05D006695 ORTHO05D008239 9.9e-97 357.1 216 81.5
MD13G1177300 Malus domestica HOM05D006695 ORTHO05D008239 9.9e-97 357.1 214 79.0
RcHm_v2.0_Chr4g0420161 Rosa chinensis HOM05D006695 ORTHO05D008239 9.9e-97 357.1 214 79.0
GSVIVG01017849001 Vitis vinifera HOM05D006695 ORTHO05D008239 9.9e-97 357.1 214 81.3
Manes.03G188400 Manihot esculenta HOM05D006695 ORTHO05D008239 1.7e-96 356.3 212 81.1
Gorai.011G181900 Gossypium raimondii HOM05D006695 ORTHO05D008239 2.2e-96 355.9 217 79.7
Potri.008G198200 Populus trichocarpa HOM05D006695 ORTHO05D008239 2.2e-96 355.9 214 79.9
Gohir.A10G105600 Gossypium hirsutum HOM05D006695 ORTHO05D008239 2.9e-96 355.5 217 79.7
TAR362G0795 Trochodendron aralioides HOM05D006695 ORTHO05D008239 2.9e-96 355.5 215 79.5
Haze_01012 Corylus avellana HOM05D006695 ORTHO05D008239 4.9e-96 354.8 216 81.9
DCAR_022857 Daucus carota HOM05D006695 ORTHO05D008239 6.4e-96 354.4 212 80.7
FvH4_4g16710 Fragaria vesca HOM05D006695 ORTHO05D008239 6.4e-96 354.4 214 78.5
Gohir.D10G163000 Gossypium hirsutum HOM05D006695 ORTHO05D008239 1.4e-95 353.2 217 79.3
FAN22G2065 Fragaria x ananassa HOM05D006695 ORTHO05D008239 1.9e-95 352.8 209 78.9
FAN07G1129 Fragaria x ananassa HOM05D006695 ORTHO05D008239 3.2e-95 352.1 214 78.0
Thecc.04G272900 Theobroma cacao HOM05D006695 ORTHO05D008239 4.1e-95 351.7 217 77.9
FAN17G3101 Fragaria x ananassa HOM05D006695 ORTHO05D008239 5.4e-95 351.3 214 77.6
CSS0029139 Camellia sinensis var. sinensis HOM05D002837 ORTHO05D008239 7.1e-95 350.9 214 79.9
Duzib151G0948 Durio zibethinus HOM05D006695 ORTHO05D008239 9.2e-95 350.5 217 80.2
PGR004G1570 Punica granatum HOM05D006695 ORTHO05D008239 9.2e-95 350.5 217 77.9
MELO3C006586.2 Cucumis melo HOM05D006695 ORTHO05D008239 1.2e-94 350.1 232 73.7
Hma1.2p1_0643F.1_g194500 Hydrangea macrophylla HOM05D006695 ORTHO05D008239 1.2e-94 350.1 213 79.3
THA.LOC104821758 Tarenaya hassleriana HOM05D006695 ORTHO05D008239 1.6e-94 349.7 218 77.5
Aqoxy5G00568 Aquilegia oxysepala HOM05D006695 ORTHO05D008239 3.5e-94 348.6 214 78.0
Oeu044811.1 Olea europaea HOM05D006695 ORTHO05D008239 3.5e-94 348.6 213 78.4
Atru.chr4.2706 Acer truncatum HOM05D006695 ORTHO05D008239 6.0e-94 347.8 214 79.4
Cpa.g.sc16.75 Carica papaya HOM05D006695 ORTHO05D008239 1.0e-93 347.1 214 80.4
Cc03_g02720 Coffea canephora HOM05D006695 ORTHO05D008239 1.0e-93 347.1 213 76.5
Carub.0007s2636 Capsella rubella HOM05D006695 ORTHO05D008239 2.3e-93 345.9 220 76.4
Thhalv10026193m.g Eutrema salsugineum HOM05D006695 ORTHO05D008239 3.0e-93 345.5 218 75.2
A03p49160 Brassica napus HOM05D006695 ORTHO05D008239 6.6e-93 344.4 218 76.1
CARHR222310 Cardamine hirsuta HOM05D006695 ORTHO05D008239 6.6e-93 344.4 217 76.0
Sc25g0004560 Simmondsia chinensis HOM05D006695 ORTHO05D008239 6.6e-93 344.4 218 78.4
AT4G15520 Arabidopsis thaliana HOM05D006695 ORTHO05D008239 1.9e-92 342.8 219 75.8
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 1.9e-92 342.8 213 75.6
Aa31LG9G1920 Aethionema arabicum HOM05D006695 ORTHO05D008239 2.5e-92 342.4 210 76.7
AL7G40000 Arabidopsis lyrata HOM05D006695 ORTHO05D008239 3.3e-92 342.0 220 75.9
C01p27440 Brassica napus HOM05D006695 ORTHO05D008239 3.3e-92 342.0 217 76.0
BcaNung00267 Brassica carinata HOM05D006695 ORTHO05D008239 4.3e-92 341.7 218 74.8
Sabra08G0162200 Salix brachista HOM05D006695 ORTHO05D008239 4.3e-92 341.7 217 77.4
Sopen01g032270 Solanum pennellii HOM05D006695 ORTHO05D008239 5.6e-92 341.3 214 74.3
PGSC0003DMG400032106 Solanum tuberosum HOM05D006695 ORTHO05D008239 5.6e-92 341.3 214 74.3
Peaxi162Scf00095g00413 Petunia axillaris HOM05D006695 ORTHO05D008239 7.3e-92 340.9 212 75.5
Sp7g13770 Schrenkiella parvula HOM05D006695 ORTHO05D008239 7.3e-92 340.9 218 73.9
MSTRG.24766 Avicennia marina HOM05D006695 ORTHO05D008239 9.6e-92 340.5 213 75.1
BolC1t02683H Brassica oleracea HOM05D006695 ORTHO05D008239 2.1e-91 339.3 217 75.1
Ciclev10006973m.g Citrus clementina HOM05D006695 ORTHO05D008239 2.1e-91 339.3 214 76.2
CAN.G889.4 Capsicum annuum HOM05D006695 ORTHO05D008239 2.8e-91 339.0 214 73.8
PSO832G0924 Papaver somniferum HOM05D006695 ORTHO05D008239 2.8e-91 339.0 219 73.5
BcaC09g50242 Brassica carinata HOM05D006695 ORTHO05D008239 4.7e-91 338.2 217 75.1
BcaC09g50247 Brassica carinata HOM05D006695 ORTHO05D008239 4.7e-91 338.2 217 75.1
A01p22050 Brassica napus HOM05D006695 ORTHO05D008239 4.7e-91 338.2 217 74.7
BraA01t02111Z Brassica rapa HOM05D006695 ORTHO05D008239 4.7e-91 338.2 217 74.7
BraA03t14010Z Brassica rapa HOM05D006695 ORTHO05D008239 4.7e-91 338.2 220 75.5
SalBow5G4654 Salvia bowleyana HOM05D006695 ORTHO05D008239 4.7e-91 338.2 213 75.6
SalBow5G4989 Salvia bowleyana HOM05D006695 ORTHO05D008239 4.7e-91 338.2 213 75.6
Solyc01g080470.3 Solanum lycopersicum HOM05D006695 ORTHO05D008239 6.2e-91 337.8 214 73.8
Eucgr.H03643 Eucalyptus grandis HOM05D006695 ORTHO05D008239 8.1e-91 337.4 217 75.6
EL10Ac3g06533 Beta vulgaris HOM05D006695 ORTHO05D008239 1.8e-90 336.3 212 75.5
ECA233G4227 Erigeron canadensis HOM05D006695 ORTHO05D008239 1.8e-90 336.3 218 75.2
Lj3A806T51 Lonicera japonica HOM05D006695 ORTHO05D008239 1.8e-90 336.3 215 77.2
ClCG05G005600 Citrullus lanatus HOM05D006695 ORTHO05D008239 3.1e-90 335.5 202 78.7
BcaC06g32939 Brassica carinata HOM05D006695 ORTHO05D008239 5.2e-90 334.7 218 74.3
PSO210G1829 Papaver somniferum HOM05D006695 ORTHO05D008239 1.2e-89 333.6 219 72.1
AUR62040724 Chenopodium quinoa HOM05D006695 ORTHO05D008239 2.0e-89 332.8 208 75.5
Nitab4.5_0000059g0220 Nicotiana tabacum HOM05D006695 ORTHO05D008239 4.4e-89 331.6 215 74.9
Lsat_1_v5_gn_6_64520 Lactuca sativa HOM05D006695 ORTHO05D008239 7.6e-89 330.9 219 74.4
Migut.N00136 Erythranthe guttata HOM05D006695 ORTHO05D008239 4.9e-88 328.2 213 72.8
HanXRQChr08g0235981 Helianthus annuus HOM05D006695 ORTHO05D008239 2.1e-86 322.8 217 73.3
Sed0005422 Sechium edule HOM05D006695 ORTHO05D008239 1.5e-84 316.6 202 75.7
unitig_8.g3083 Utricularia gibba HOM05D006695 ORTHO05D008239 1.3e-83 313.5 215 70.7
BcaC06g33413 Brassica carinata HOM05D006695 ORTHO05D008239 3.4e-81 305.4 222 68.9
CDE02G2295 Ceratophyllum demersum HOM05D006695 ORTHO05D008239 2.2e-80 302.8 198 72.2
SHI00328 Sapria himalayana HOM05D006695 ORTHO05D008239 2.2e-80 302.8 215 71.2
SEGI_18217 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 1.4e-79 300.1 204 68.1
Os05g0141400 Oryza sativa ssp. japonica HOM05D006695 ORTHO05D008239 3.2e-79 298.9 215 67.4
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 7.9e-78 294.3 211 67.8
Nitab4.5_0006860g0010 Nicotiana tabacum HOM05D006695 ORTHO05D008239 1.0e-77 293.9 212 68.9
Zm00001eb108650 Zea mays HOM05D006695 ORTHO05D008239 1.0e-77 293.9 215 67.0
ATR0580G301 Amborella trichopoda HOM05D006695 ORTHO05D008239 2.3e-77 292.7 206 68.9
C07p47200 Brassica napus HOM05D006695 ORTHO05D008239 4.8e-75 285.0 195 71.3
AagrBONN_evm.TU.Sc2ySwM_228.600 Anthoceros agrestis HOM05D006695 ORTHO05D008239 1.3e-72 276.9 184 67.9
Mapoly0001s0064 Marchantia polymorpha HOM05D006695 ORTHO05D008239 8.4e-72 274.2 212 62.7
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 1.1e-71 273.9 142 91.5
BolC7t45242H Brassica oleracea HOM05D006695 ORTHO05D008239 1.9e-71 273.1 190 70.5
SMO347G0043 Selaginella moellendorffii HOM05D006695 ORTHO05D008239 4.2e-71 271.9 203 64.0
CDE08G0351 Ceratophyllum demersum HOM05D006695 ORTHO05D008239 1.6e-70 270.0 216 63.0
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 5.1e-69 265.0 214 61.2
FAN12G3773 Fragaria x ananassa HOM05D006695 ORTHO05D008239 1.4e-63 246.9 260 53.1
Dinv38348 Davidia involucrata HOM05D006695 ORTHO05D008239 6.0e-62 241.5 149 75.8
MD16G1178900 Malus domestica HOM05D006695 ORTHO05D008239 2.5e-60 236.1 147 74.8
vmacro08234 Vaccinium macrocarpon HOM05D006695 ORTHO05D008239 6.3e-59 231.5 147 75.5
Hma1.2p1_0643F.1_g194510 Hydrangea macrophylla HOM05D006695 ORTHO05D008239 1.1e-58 230.7 150 72.0
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 1.3e-56 223.8 180 58.3
MCO16G273 Micromonas commoda HOM05D006695 ORTHO05D008239 9.7e-52 207.6 191 51.8
FAN12G1880 Fragaria x ananassa HOM05D006695 ORTHO05D008239 5.5e-47 191.8 100 89.0
PRCOL_00001113 Prasinoderma coloniale HOM05D006695 ORTHO05D008239 6.1e-38 161.8 207 46.4
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 2.3e-29 133.3 80 77.5
SEGI_22589 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 2.2e-27 126.7 96 60.4
CBR_g29509 Chara braunii HOM05D006695 ORTHO05D008239 5.0e-24 115.5 96 58.3
CBR_g29507 Chara braunii HOM05D006695 ORTHO05D008239 6.5e-24 115.2 93 60.2
arahy.Tifrunner.gnm1.ann1.5C91KI Arachis hypogaea HOM05D006695 ORTHO05D008239 1.1e-23 114.4 66 81.8
ATR0235G001 Amborella trichopoda HOM05D006695 ORTHO05D008239 8.0e-22 108.2 66 75.8
MD13G1177100 Malus domestica HOM05D006695 ORTHO05D008239 7.7e-17 91.7 66 63.6
Oeu037660.1 Olea europaea HOM05D006695 ORTHO05D008239 4.9e-11 72.4 143 35.7
arahy.Tifrunner.gnm1.ann1.A7EL5Y Arachis hypogaea HOM05D003181 ORTHO05D003689 3.5e-09 66.2 41 70.7
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 2.3e-08 63.5 141 29.8
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 2.3e-08 63.5 141 29.8
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 2.9e-08 63.2 142 31.0
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 2.9e-08 63.2 142 30.3
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 3.8e-08 62.8 142 28.2
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 5.0e-08 62.4 142 30.3
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 5.0e-08 62.4 142 27.5
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 5.0e-08 62.4 142 27.5
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 5.0e-08 62.4 142 29.6
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 6.6e-08 62.0 142 29.6
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 8.6e-08 61.6 142 30.3
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 1.1e-07 61.2 142 27.5
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 1.1e-07 61.2 141 29.1
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 1.1e-07 61.2 142 27.5
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 1.1e-07 61.2 142 29.6
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 1.1e-07 61.2 142 29.6
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 1.1e-07 61.2 142 29.6
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 1.5e-07 60.8 142 29.6
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 1.5e-07 60.8 143 28.7
Glyma.08G241400 Glycine max HOM05D006539 ORTHO05D008694 1.5e-07 60.8 142 29.6
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 1.5e-07 60.8 142 29.6
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 1.9e-07 60.5 142 26.8
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 2.5e-07 60.1 141 29.1
PGR004G2004 Punica granatum HOM05D006539 ORTHO05D008694 2.5e-07 60.1 141 29.1
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 3.3e-07 59.7 142 29.6
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 3.3e-07 59.7 142 28.9
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 3.3e-07 59.7 142 29.6
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 3.3e-07 59.7 141 28.4
GSVIVG01011483001 Vitis vinifera HOM05D006539 ORTHO05D008694 3.3e-07 59.7 142 28.9
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 4.3e-07 59.3 142 28.9
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 5.6e-07 58.9 142 27.5
Lalb_Chr10g0093241 Lupinus albus HOM05D006539 ORTHO05D008694 5.6e-07 58.9 194 26.8
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 1.2e-06 57.8 142 28.9
FvH4_6g47560 Fragaria vesca HOM05D006539 ORTHO05D008694 1.2e-06 57.8 142 27.5
FAN14G0848 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.2e-06 57.8 142 27.5
Oeu000853.1 Olea europaea HOM05D006539 ORTHO05D008694 1.2e-06 57.8 143 28.7
RcHm_v2.0_Chr2g0166661 Rosa chinensis HOM05D006539 ORTHO05D008694 1.2e-06 57.8 142 27.5
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 1.2e-06 57.8 142 28.2
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 1.2e-06 57.8 142 28.2
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 1.6e-06 57.4 194 24.2
arahy.Tifrunner.gnm1.ann1.YFBV2Q Arachis hypogaea HOM05D006539 ORTHO05D008694 1.6e-06 57.4 142 28.9
AUR62034477 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.6e-06 57.4 113 31.9
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 1.6e-06 57.4 161 26.7
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 1.6e-06 57.4 161 26.7
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 1.6e-06 57.4 160 28.1
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 1.6e-06 57.4 157 28.7
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 1.6e-06 57.4 142 28.2
unitig_899.g15160 Utricularia gibba HOM05D006539 ORTHO05D008694 1.6e-06 57.4 142 28.9
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 2.1e-06 57.0 164 26.8
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 2.1e-06 57.0 142 27.5
CDE06G2615 Ceratophyllum demersum HOM05D006539 ORTHO05D008694 2.1e-06 57.0 142 26.8
FAN05G4473 Fragaria x ananassa HOM05D006539 ORTHO05D008694 2.1e-06 57.0 142 27.5
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 2.1e-06 57.0 142 26.1
SalBow1G8487 Salvia bowleyana HOM05D006539 ORTHO05D008694 2.1e-06 57.0 142 28.9
SHI02689 Sapria himalayana HOM05D005801 ORTHO05D008555 2.1e-06 57.0 165 26.1
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 2.1e-06 57.0 142 27.5
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 2.1e-06 57.0 142 28.9
Prupe.3G259900 Prunus persica HOM05D006539 ORTHO05D008694 2.8e-06 56.6 142 28.9
CsaV3_3G041040 Cucumis sativus L. HOM05D006539 ORTHO05D008694 3.6e-06 56.2 142 28.9
Zm00001eb326670 Zea mays HOM05D006539 ORTHO05D008694 4.7e-06 55.8 142 28.9
AL6G26250 Arabidopsis lyrata HOM05D006539 ORTHO05D008694 6.1e-06 55.5 194 23.7
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 6.1e-06 55.5 198 23.2
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 8.0e-06 55.1 141 29.1


User provided reference genes

Program Settings