Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G092600 Phaseolus vulgaris HOM05D007677 ORTHO05D009728 1.7e-87 325.9 152 100.0
VMungo1215G2604 Vigna mungo HOM05D007677 ORTHO05D009728 4.6e-85 317.8 152 96.7
Glyma.17G017000 Glycine max HOM05D007677 ORTHO05D009728 1.0e-84 316.6 152 98.0
Glyma.07G257100 Glycine max HOM05D007677 ORTHO05D009728 3.2e-78 295.0 152 92.1
Lj4g0019321 Lotus japonicus HOM05D007677 ORTHO05D009728 1.6e-74 282.7 156 85.9
Medtr4g117270 Medicago truncatula HOM05D007677 ORTHO05D009728 1.0e-71 273.5 152 85.5
Ciclev10006064m.g Citrus clementina HOM05D007677 ORTHO05D009728 2.2e-71 272.3 153 80.4
QL06p004212 Quercus lobata HOM05D007677 ORTHO05D009728 5.5e-70 267.7 150 80.7
Ca_21594_v3 Cicer arietinum L. HOM05D007677 ORTHO05D009728 9.3e-70 266.9 151 80.8
Psat4g031560 Pisum sativum HOM05D007677 ORTHO05D009728 1.6e-69 266.2 151 82.8
Thecc.04G221700 Theobroma cacao HOM05D007677 ORTHO05D009728 1.6e-69 266.2 150 80.0
CiPaw.02G092500 Carya illinoinensis HOM05D007677 ORTHO05D009728 3.5e-69 265.0 147 82.3
TPR.G20115 Trifolium pratense HOM05D007677 ORTHO05D009728 3.5e-69 265.0 152 83.6
Duzib212G0325 Durio zibethinus HOM05D001530 ORTHO05D003676 3.9e-68 261.5 150 78.0
CiPaw.01G160100 Carya illinoinensis HOM05D007677 ORTHO05D009728 5.1e-68 261.2 151 76.8
COL.COLO4_21648 Corchorus olitorius HOM05D007677 ORTHO05D009728 1.9e-67 259.2 150 78.7
Glyma.13G208700 Glycine max HOM05D007677 ORTHO05D009728 3.3e-67 258.5 152 78.9
Manes.03G184600 Manihot esculenta HOM05D007677 ORTHO05D009728 5.7e-67 257.7 150 80.0
Phvul.006G153800 Phaseolus vulgaris HOM05D007677 ORTHO05D009728 4.8e-66 254.6 152 78.3
arahy.Tifrunner.gnm1.ann1.PDVV0K Arachis hypogaea HOM05D007677 ORTHO05D009728 6.3e-66 254.2 152 78.9
Glyma.15G104100 Glycine max HOM05D007677 ORTHO05D009728 2.4e-65 252.3 152 77.6
arahy.Tifrunner.gnm1.ann1.UI8DPT Arachis hypogaea HOM05D007677 ORTHO05D009728 3.1e-65 251.9 152 78.9
MD13G1183200 Malus domestica HOM05D007677 ORTHO05D009728 2.0e-64 249.2 153 75.8
Gohir.A02G031000 Gossypium hirsutum HOM05D007677 ORTHO05D009728 1.3e-63 246.5 151 75.5
FvH4_4g14500 Fragaria vesca HOM05D007677 ORTHO05D009728 3.8e-63 245.0 151 74.2
FAN12G4178 Fragaria x ananassa HOM05D007677 ORTHO05D009728 3.8e-63 245.0 151 74.2
Gohir.D02G037900 Gossypium hirsutum HOM05D007677 ORTHO05D009728 5.0e-63 244.6 151 74.8
Gorai.005G041800 Gossypium raimondii HOM05D007677 ORTHO05D009728 5.0e-63 244.6 151 74.8
Cfa015583 Carpinus fangiana HOM05D007677 ORTHO05D009728 6.5e-63 244.2 151 74.8
RcHm_v2.0_Chr4g0418331 Rosa chinensis HOM05D007677 ORTHO05D009728 8.5e-63 243.8 151 74.2
CANSAT78G2143 Cannabis sativa HOM05D007677 ORTHO05D009728 2.5e-62 242.3 147 76.2
Prupe.1G151500 Prunus persica HOM05D007677 ORTHO05D009728 3.2e-62 241.9 152 74.3
Sabra10G0011000 Salix brachista HOM05D001530 ORTHO05D004168 3.2e-62 241.9 152 74.3
FAN07G0089 Fragaria x ananassa HOM05D007677 ORTHO05D009728 5.5e-62 241.1 151 72.8
Haze_00962 Corylus avellana HOM05D007677 ORTHO05D009728 7.2e-62 240.7 147 76.2
MD16G1184100 Malus domestica HOM05D007677 ORTHO05D009728 9.3e-62 240.4 153 72.5
TWI09G0567 Tripterygium wilfordii HOM05D007677 ORTHO05D009728 9.3e-62 240.4 154 72.1
CsaV3_3G013730 Cucumis sativus L. HOM05D007677 ORTHO05D009728 1.6e-61 239.6 147 74.1
VMungo0540G0472 Vigna mungo HOM05D007677 ORTHO05D009728 1.6e-61 239.6 152 75.0
ClCG05G005440 Citrullus lanatus HOM05D007677 ORTHO05D009728 2.1e-61 239.2 146 74.0
MELO3C006567.2 Cucumis melo HOM05D007677 ORTHO05D009728 2.1e-61 239.2 147 73.5
Cc03_g03130 Coffea canephora HOM05D007677 ORTHO05D009728 3.6e-61 238.4 146 76.0
Ca_00644_v3 Cicer arietinum L. HOM05D007677 ORTHO05D009728 7.9e-61 237.3 152 74.3
SGA_v2.0_scaffold237G43825 Striga asiatica HOM05D007677 ORTHO05D009728 7.9e-61 237.3 156 71.8
TPR.G30685 Trifolium pratense HOM05D007677 ORTHO05D009728 1.0e-60 236.9 152 74.3
Medtr2g022190 Medicago truncatula HOM05D007677 ORTHO05D009728 1.8e-60 236.1 152 74.3
Eucgr.H03598 Eucalyptus grandis HOM05D007677 ORTHO05D009728 2.3e-60 235.7 150 74.7
Oeu037682.1 Olea europaea HOM05D007677 ORTHO05D009728 2.3e-60 235.7 147 74.1
Sed0011127 Sechium edule HOM05D007677 ORTHO05D009728 3.9e-60 235.0 147 72.8
Nn1g02165 Nelumbo nucifera HOM05D007677 ORTHO05D009728 6.7e-60 234.2 146 73.3
Lalb_Chr18g0056081 Lupinus albus HOM05D007677 ORTHO05D009728 1.1e-59 233.4 153 73.9
Lj6g0003442 Lotus japonicus HOM05D007677 ORTHO05D009728 1.5e-59 233.0 152 75.0
CSS0026660 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 1.9e-59 232.6 150 74.7
DCAR_030598 Daucus carota HOM05D007677 ORTHO05D009728 7.4e-59 230.7 146 71.9
Psat1g183560 Pisum sativum HOM05D007677 ORTHO05D009728 1.2e-56 223.4 152 71.7
Peaxi162Scf00196g00106 Petunia axillaris HOM05D007677 ORTHO05D009728 1.5e-56 223.0 149 69.8
PGR004G0596 Punica granatum HOM05D007677 ORTHO05D009728 4.5e-56 221.5 145 74.5
Aqoxy2G03269 Aquilegia oxysepala HOM05D007677 ORTHO05D009728 7.7e-56 220.7 148 70.3
PGSC0003DMG400033121 Solanum tuberosum HOM05D007677 ORTHO05D009728 7.7e-56 220.7 146 69.2
Sopen01g031880 Solanum pennellii HOM05D007677 ORTHO05D009728 2.9e-55 218.8 146 69.9
Solyc01g080100.3 Solanum lycopersicum HOM05D007677 ORTHO05D009728 1.4e-54 216.5 146 69.2
vmacro08279 Vaccinium macrocarpon HOM05D007677 ORTHO05D009728 1.4e-54 216.5 158 67.1
CSS0045125 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 9.4e-54 213.8 159 65.4
Migut.G00291 Erythranthe guttata HOM05D007677 ORTHO05D009728 1.2e-53 213.4 145 69.0
Lj6P565T22 Lonicera japonica HOM05D007677 ORTHO05D009728 2.1e-53 212.6 146 69.2
PSO407G0046 Papaver somniferum HOM05D007677 ORTHO05D009728 1.0e-52 210.3 151 68.9
PSO170G6325 Papaver somniferum HOM05D007677 ORTHO05D009728 2.3e-52 209.1 151 68.2
TAR633G1088 Trochodendron aralioides HOM05D007677 ORTHO05D009728 1.5e-51 206.5 158 64.6
Nitab4.5_0001247g0090 Nicotiana tabacum HOM05D007677 ORTHO05D009728 1.3e-50 203.4 149 65.1
CSS0000052 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 1.4e-49 199.9 149 67.8
AUR62030087 Chenopodium quinoa HOM05D007677 ORTHO05D007693 1.2e-45 186.8 140 66.4
Dinv38394 Davidia involucrata HOM05D007677 ORTHO05D009728 2.3e-44 182.6 135 67.4
Sc13g0003990 Simmondsia chinensis HOM05D007677 ORTHO05D009728 5.2e-44 181.4 147 59.9
THA.LOC104820106 Tarenaya hassleriana HOM05D001407 ORTHO05D001314 2.2e-42 176.0 139 62.6
TAR362G0152 Trochodendron aralioides HOM05D007677 ORTHO05D009728 1.3e-39 166.8 109 69.7
AL3G17000 Arabidopsis lyrata HOM05D007677 ORTHO05D009728 1.2e-37 160.2 146 56.8
BcaC05g30051 Brassica carinata HOM05D007677 ORTHO05D009728 1.6e-37 159.8 146 55.5
Sp3g05100 Schrenkiella parvula HOM05D007677 ORTHO05D009728 2.7e-37 159.1 146 55.5
A05p41840 Brassica napus HOM05D007677 ORTHO05D009728 3.6e-37 158.7 146 54.8
BraA05t22903Z Brassica rapa HOM05D007677 ORTHO05D009728 3.6e-37 158.7 146 54.8
Carub.0003s0558 Capsella rubella HOM05D007677 ORTHO05D009728 4.7e-37 158.3 146 56.2
C05p61090 Brassica napus HOM05D007677 ORTHO05D009728 6.1e-37 157.9 146 54.8
BolC5t34766H Brassica oleracea HOM05D007677 ORTHO05D009728 6.1e-37 157.9 146 54.8
AT3G06145 Arabidopsis thaliana HOM05D007677 ORTHO05D009728 3.0e-36 155.6 138 56.5
BcaNung06667 Brassica carinata HOM05D007677 ORTHO05D009728 3.0e-36 155.6 138 55.8
Thhalv10021653m.g Eutrema salsugineum HOM05D007677 ORTHO05D009728 6.7e-36 154.5 144 54.2
ATR0626G325 Amborella trichopoda HOM05D007677 ORTHO05D009728 1.2e-35 153.7 138 55.1
CARHR080660 Cardamine hirsuta HOM05D007677 ORTHO05D009728 5.7e-35 151.4 144 54.9
Aa31LG5G16660 Aethionema arabicum HOM05D007677 ORTHO05D009728 3.7e-34 148.7 152 51.3
SHI00378 Sapria himalayana HOM05D007677 ORTHO05D009728 2.4e-33 146.0 140 50.0
SEGI_19260 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 1.1e-30 137.1 127 52.0
Atru.chr4.2568 Acer truncatum HOM05D007677 ORTHO05D009728 9.4e-30 134.0 77 81.8
Lsat_1_v5_gn_7_41320 Lactuca sativa HOM05D007677 ORTHO05D009728 5.7e-27 124.8 89 68.5
Potri.010G030701 Populus trichocarpa HOM05D007677 ORTHO05D009728 2.8e-26 122.5 87 69.0
MBI17_g34455_MAGBIO Magnolia biondii HOM05D002055 ORTHO05D002120 3.6e-21 105.5 70 70.0
EL10Ac3g06358 Beta vulgaris HOM05D007677 ORTHO05D009728 1.2e-19 100.5 71 70.4
SEGI_22306 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 8.3e-18 94.4 117 41.9
SEGI_22697 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 1.2e-16 90.5 116 40.5


User provided reference genes

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