Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 1.9e-98 362.5 175 100.0
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 5.1e-80 301.2 174 84.5
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 3.3e-63 245.4 177 72.3
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 3.2e-50 202.2 178 60.1
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 6.8e-48 194.5 182 57.1
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 1.3e-46 190.3 177 54.8
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 6.3e-46 188.0 178 54.5
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 1.1e-45 187.2 182 53.8
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 1.1e-45 187.2 182 53.3
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 1.1e-45 187.2 167 59.9
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 2.4e-45 186.0 185 56.8
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 4.1e-45 185.3 178 52.2
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 2.7e-44 182.6 160 57.5
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 1.0e-43 180.6 146 61.0
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 6.6e-43 177.9 157 59.9
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 2.5e-42 176.0 174 52.9
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 2.5e-42 176.0 179 52.5
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 2.1e-41 172.9 164 54.9
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 2.8e-41 172.6 207 46.9
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 3.6e-41 172.2 187 46.5
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 3.6e-41 172.2 179 55.9
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 6.1e-41 171.4 187 47.6
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 1.4e-40 170.2 179 48.0
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 2.3e-40 169.5 156 53.8
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 2.3e-40 169.5 163 52.8
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 4.0e-40 168.7 165 52.7
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 6.8e-40 167.9 188 50.0
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 8.9e-40 167.5 165 52.1
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 1.5e-39 166.8 186 46.2
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 2.0e-39 166.4 165 50.9
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 7.5e-39 164.5 186 45.2
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 9.8e-39 164.1 166 47.0
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 4.9e-38 161.8 157 51.6
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 3.2e-37 159.1 185 48.6
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 7.0e-37 157.9 197 45.2
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 7.0e-37 157.9 189 46.0
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 7.0e-37 157.9 189 46.0
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 7.0e-37 157.9 179 49.7
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 7.0e-37 157.9 160 50.0
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 9.2e-37 157.5 166 47.0
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 1.6e-36 156.8 161 49.1
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 1.6e-36 156.8 181 49.2
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 2.0e-36 156.4 154 51.3
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 1.0e-35 154.1 161 50.3
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 1.3e-35 153.7 136 53.7
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 1.3e-35 153.7 187 45.5
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 2.3e-35 152.9 153 49.0
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 3.9e-35 152.1 185 46.5
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 5.0e-35 151.8 168 47.0
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 1.1e-34 150.6 153 48.4
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 9.5e-34 147.5 198 46.5
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 1.2e-33 147.1 149 51.7
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 1.2e-33 147.1 149 51.7
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 2.8e-33 146.0 185 42.7
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 4.7e-33 145.2 167 47.9
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 8.9e-32 141.0 161 47.2
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 1.5e-31 140.2 154 48.7
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 2.6e-31 139.4 176 46.6
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 5.8e-31 138.3 185 42.7
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.3e-30 137.1 158 45.6
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 1.7e-30 136.7 147 46.3
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 1.7e-30 136.7 142 50.7
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 2.9e-30 136.0 169 43.8
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 2.9e-30 136.0 142 50.0
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 4.9e-30 135.2 145 49.7
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 4.9e-30 135.2 131 51.1
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 6.4e-30 134.8 177 40.7
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 5.4e-29 131.7 204 44.1
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 7.0e-29 131.3 189 40.2
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 7.0e-29 131.3 146 48.6
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 1.2e-28 130.6 168 40.5
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.6e-28 130.2 155 49.0
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 6.0e-28 128.3 144 45.1
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.3e-27 127.1 129 49.6
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 1.7e-27 126.7 165 43.6
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 1.7e-27 126.7 172 44.2
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 2.3e-27 126.3 174 40.8
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 3.0e-27 125.9 153 42.5
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 3.0e-27 125.9 153 42.5
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 3.9e-27 125.6 160 41.2
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 5.0e-27 125.2 164 40.9
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 6.6e-27 124.8 145 43.4
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 1.9e-26 123.2 146 43.8
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 1.9e-26 123.2 138 44.2
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 4.3e-26 122.1 146 44.5
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 7.3e-26 121.3 199 40.2
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 7.3e-26 121.3 164 42.1
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 9.5e-26 120.9 164 36.6
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 2.1e-25 119.8 189 39.2
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 4.7e-25 118.6 153 41.2
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 4.7e-25 118.6 171 40.9
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 8.1e-25 117.9 134 44.8
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 1.8e-24 116.7 163 41.1
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 1.8e-24 116.7 179 38.5
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 2.3e-24 116.3 159 40.9
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 4.0e-24 115.5 162 41.4
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 4.0e-24 115.5 144 45.8
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 4.0e-24 115.5 137 43.1
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 4.0e-24 115.5 172 41.3
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 6.8e-24 114.8 159 42.1
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 6.8e-24 114.8 140 44.3
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 6.8e-24 114.8 165 39.4
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.2e-23 114.0 137 41.6
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 1.5e-23 113.6 156 39.7
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 1.5e-23 113.6 156 39.7
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 2.0e-23 113.2 136 45.6
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 2.6e-23 112.8 164 38.4
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 2.6e-23 112.8 158 39.2
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 4.4e-23 112.1 158 41.1
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 5.8e-23 111.7 165 38.2
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 1.3e-22 110.5 137 41.6
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 1.3e-22 110.5 133 42.9
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 1.7e-22 110.2 136 43.4
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 1.7e-22 110.2 140 42.9
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 3.7e-22 109.0 161 39.8
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 3.7e-22 109.0 158 40.5
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 3.7e-22 109.0 158 40.5
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 3.7e-22 109.0 163 38.0
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 6.4e-22 108.2 158 40.5
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 6.4e-22 108.2 134 41.8
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 1.1e-21 107.5 158 40.5
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 1.1e-21 107.5 158 40.5
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 1.1e-21 107.5 159 43.4
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.1e-21 107.5 155 38.7
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 1.4e-21 107.1 140 41.4
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 1.4e-21 107.1 155 40.0
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.9e-21 106.7 164 37.8
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 2.4e-21 106.3 134 39.6
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 3.2e-21 105.9 135 41.5
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 3.2e-21 105.9 156 37.8
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 3.2e-21 105.9 156 37.8
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 3.2e-21 105.9 141 41.1
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 2.1e-20 103.2 150 39.3
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 2.7e-20 102.8 158 38.6
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 2.7e-20 102.8 158 38.6
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 3.5e-20 102.4 136 42.6
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 3.5e-20 102.4 156 38.5
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 3.5e-20 102.4 136 41.2
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 4.6e-20 102.1 136 42.6
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 4.6e-20 102.1 170 37.1
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 1.0e-19 100.9 162 38.9
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 1.0e-19 100.9 172 36.0
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 1.3e-19 100.5 162 38.9
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 1.3e-19 100.5 151 39.1
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 1.3e-19 100.5 186 33.9
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 2.3e-19 99.8 158 36.1
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 2.3e-19 99.8 161 40.4
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 3.0e-19 99.4 158 38.0
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 3.0e-19 99.4 158 38.6
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 3.0e-19 99.4 158 38.0
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 3.0e-19 99.4 158 38.0
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 3.0e-19 99.4 161 40.4
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 3.9e-19 99.0 166 38.0
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 3.9e-19 99.0 161 39.1
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 5.1e-19 98.6 133 41.4
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 5.1e-19 98.6 136 39.0
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 6.6e-19 98.2 136 40.4
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 6.6e-19 98.2 156 37.2
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 8.6e-19 97.8 170 36.5
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.5e-18 97.1 159 40.3
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 1.5e-18 97.1 162 38.3
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 1.5e-18 97.1 141 41.1
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 2.5e-18 96.3 136 41.2
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 4.3e-18 95.5 133 41.4
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 5.6e-18 95.1 158 37.3
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 9.5e-18 94.4 162 37.0
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 1.2e-17 94.0 148 38.5
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 2.8e-17 92.8 136 39.7
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 3.6e-17 92.4 136 39.7
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 1.8e-16 90.1 91 44.0
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 4.0e-16 89.0 116 40.5
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 4.0e-16 89.0 100 46.0
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 6.8e-16 88.2 167 37.7
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 6.8e-16 88.2 140 38.6
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 7.6e-15 84.7 74 51.4
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 2.1e-12 76.6 168 30.4
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 2.1e-12 76.6 152 32.9
RcHm_v2.0_Chr5g0000571 Rosa chinensis HOM05D003761 ORTHO05D004412 9.6e-10 67.8 64 56.2
SEGI_28043 Sequoiadendron giganteum HOM05D003761 ORTHO05D004412 1.8e-08 63.5 117 35.0
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 3.1e-08 62.8 80 41.2


User provided reference genes

Program Settings