Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 2.6e-156 555.4 298 100.0
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 5.1e-120 434.9 294 83.3
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 1.3e-80 303.9 304 63.5
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 1.0e-72 277.7 313 57.2
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 3.9e-72 275.8 300 56.0
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 1.7e-70 270.4 311 56.3
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 1.2e-68 264.2 320 51.9
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 2.5e-66 256.5 333 51.1
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 4.2e-66 255.8 332 54.5
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 3.0e-64 249.6 333 48.0
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 5.7e-63 245.4 349 49.0
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 9.7e-63 244.6 334 52.1
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 6.3e-62 241.9 314 49.7
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 1.8e-61 240.4 320 48.4
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 2.4e-61 240.0 331 53.2
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 4.1e-61 239.2 308 48.4
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 5.3e-61 238.8 295 49.2
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 9.1e-61 238.0 330 52.7
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 2.0e-60 236.9 286 50.7
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.6e-60 236.5 348 46.6
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.0e-59 234.6 331 47.7
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 2.9e-59 233.0 315 53.0
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 5.0e-59 232.3 307 50.8
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 1.1e-58 231.1 337 49.0
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 1.5e-58 230.7 349 48.4
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.5e-58 230.7 352 46.3
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 1.5e-58 230.7 320 47.5
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 1.9e-58 230.3 337 49.0
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 3.2e-58 229.6 324 48.5
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 4.2e-58 229.2 322 50.3
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 5.5e-58 228.8 326 51.5
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 2.1e-57 226.9 340 48.5
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 2.7e-57 226.5 286 49.0
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 2.7e-57 226.5 327 47.4
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 3.6e-57 226.1 338 44.7
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 1.0e-56 224.6 327 45.9
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 5.2e-56 222.2 327 47.7
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 2.0e-55 220.3 318 45.9
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.0e-55 220.3 306 49.3
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 2.6e-55 219.9 331 44.1
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.6e-55 219.9 339 46.3
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 5.7e-55 218.8 331 47.7
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 7.5e-55 218.4 326 51.8
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 9.7e-55 218.0 346 44.8
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.7e-54 217.2 346 48.8
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 1.4e-53 214.2 294 46.9
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 1.8e-53 213.8 317 47.6
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 3.1e-53 213.0 330 49.7
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 3.1e-53 213.0 317 47.6
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 5.3e-53 212.2 332 46.1
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 5.3e-53 212.2 337 46.9
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 1.2e-52 211.1 331 50.5
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 1.6e-52 210.7 334 45.5
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 2.7e-52 209.9 334 44.0
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 3.5e-52 209.5 303 47.9
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 7.7e-52 208.4 323 46.4
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 1.7e-51 207.2 316 48.1
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 3.8e-51 206.1 332 47.3
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 5.0e-51 205.7 338 45.0
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 1.9e-50 203.8 320 45.3
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 2.5e-50 203.4 306 48.7
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 2.5e-50 203.4 211 58.8
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 3.2e-50 203.0 328 42.4
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 4.2e-50 202.6 347 42.4
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 5.5e-50 202.2 297 45.8
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 7.2e-50 201.8 334 42.5
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.2e-49 201.1 324 44.4
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 1.6e-49 200.7 335 44.2
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 1.6e-49 200.7 325 43.4
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 2.7e-49 199.9 377 41.6
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 2.7e-49 199.9 330 44.2
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 4.7e-49 199.1 324 43.2
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 6.1e-49 198.7 324 44.1
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 8.0e-49 198.4 318 43.1
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 1.4e-48 197.6 312 47.1
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 4.0e-48 196.1 336 43.5
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 5.2e-48 195.7 322 44.7
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 1.5e-47 194.1 329 43.5
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 1.5e-47 194.1 325 43.7
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 2.0e-47 193.7 329 43.5
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 2.0e-47 193.7 250 54.4
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.6e-47 193.4 309 47.2
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 9.8e-47 191.4 307 45.9
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 1.7e-46 190.7 356 40.2
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 2.2e-46 190.3 335 42.1
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.2e-46 190.3 342 41.2
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 2.8e-46 189.9 337 45.7
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 2.8e-46 189.9 304 47.7
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 4.8e-46 189.1 242 49.2
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 6.3e-46 188.7 286 45.1
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 8.3e-46 188.3 345 41.4
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 2.4e-45 186.8 333 42.6
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 2.4e-45 186.8 318 44.7
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 2.4e-45 186.8 333 42.6
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 2.4e-45 186.8 322 45.0
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 2.4e-45 186.8 333 42.6
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 3.1e-45 186.4 321 43.6
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 3.1e-45 186.4 308 44.5
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 7.0e-45 185.3 398 37.9
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 7.0e-45 185.3 331 42.0
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 3.5e-44 183.0 322 44.1
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 4.5e-44 182.6 330 42.7
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 8.5e-43 178.3 304 43.4
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 1.5e-42 177.6 326 42.3
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 2.5e-42 176.8 336 42.0
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 3.2e-42 176.4 330 40.6
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 3.2e-42 176.4 407 39.1
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 4.2e-42 176.0 328 41.2
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 4.2e-42 176.0 301 43.2
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 9.5e-42 174.9 328 39.0
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.2e-41 174.5 336 45.5
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 8.0e-41 171.8 293 44.0
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 2.3e-40 170.2 291 41.9
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 3.0e-40 169.9 326 40.5
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 8.8e-40 168.3 313 39.9
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 8.8e-40 168.3 314 41.1
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 7.5e-39 165.2 337 40.1
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 1.7e-38 164.1 273 42.9
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 1.7e-38 164.1 210 49.5
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 1.1e-37 161.4 187 52.9
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.8e-37 160.6 351 38.2
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.4e-37 160.2 325 39.7
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 4.1e-37 159.5 290 43.8
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 9.2e-37 158.3 228 48.2
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 2.7e-36 156.8 261 42.5
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 7.7e-36 155.2 312 40.4
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 1.7e-35 154.1 283 44.9
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 5.0e-35 152.5 209 52.2
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 8.6e-35 151.8 308 41.2
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 4.3e-34 149.4 226 45.1
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 5.6e-34 149.1 327 37.0
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.4e-32 144.4 161 52.2
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 6.8e-32 142.1 159 55.3
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 1.7e-30 137.5 283 41.0
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 3.7e-30 136.3 330 36.4
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 6.4e-30 135.6 297 40.1
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 1.1e-29 134.8 363 35.8
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 3.2e-29 133.3 320 36.2
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 4.1e-29 132.9 298 37.2
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 9.2e-29 131.7 143 53.1
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 9.2e-29 131.7 341 35.8
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 5.9e-28 129.0 261 38.3
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 3.9e-27 126.3 280 38.6
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 5.0e-27 125.9 150 50.7
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 4.3e-26 122.9 207 45.4
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 5.2e-24 115.9 151 51.7
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 3.7e-22 109.8 283 36.4
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.0e-19 100.1 112 52.7
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 3.0e-19 100.1 197 39.1
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.9e-18 97.4 261 33.0
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 9.5e-18 95.1 356 33.7
unitig_748.g7579 Utricularia gibba HOM05D004496 ORTHO05D005513 2.6e-15 87.0 210 37.6
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 7.5e-15 85.5 350 31.7
Os11g0497350 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 1.4e-13 81.3 192 33.9
Os01g0922100 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 7.3e-10 68.9 140 36.4
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 3.6e-09 66.6 317 29.3
Zm00001eb143140 Zea mays HOM05D004496 ORTHO05D005513 8.4e-06 55.5 147 33.3


User provided reference genes

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