Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G079400 Phaseolus vulgaris HOM05D007037 ORTHO05D006691 1.0e-31 139.4 69 100.0
Glyma.17G012900 Glycine max HOM05D007037 ORTHO05D006691 1.3e-26 122.5 69 88.4
Glyma.07G261100 Glycine max HOM05D007037 ORTHO05D006691 3.2e-25 117.9 69 85.5
Ca_21080_v3 Cicer arietinum L. HOM05D007037 ORTHO05D006691 5.1e-23 110.5 67 76.1
TPR.G37004 Trifolium pratense HOM05D007037 ORTHO05D006691 6.6e-23 110.2 65 78.5
Lj4g0019440 Lotus japonicus HOM05D007037 ORTHO05D006691 1.9e-22 108.6 68 75.0
Psat4g006560 Pisum sativum HOM05D007037 ORTHO05D006691 1.1e-20 102.8 68 73.5
Lalb_Chr07g0177181 Lupinus albus HOM05D007037 ORTHO05D006691 8.4e-18 93.2 67 68.7
Lalb_Chr13g0304241 Lupinus albus HOM05D007037 ORTHO05D006691 1.9e-17 92.0 67 68.7
Glyma.09G004000 Glycine max HOM05D007037 ORTHO05D006691 6.0e-16 87.0 70 68.6
Medtr4g132230 Medicago truncatula HOM05D007037 ORTHO05D006691 3.0e-15 84.7 69 63.8
QL05p073032 Quercus lobata HOM05D007037 ORTHO05D006691 1.3e-13 79.3 79 55.7
Lj6g0006723 Lotus japonicus HOM05D007037 ORTHO05D006691 8.1e-13 76.6 71 60.6
Medtr2g023440 Medicago truncatula HOM05D007037 ORTHO05D006691 8.1e-13 76.6 80 56.2
Thecc.06G221700 Theobroma cacao HOM05D007037 ORTHO05D006691 1.4e-12 75.9 80 50.0
Oeu025269.1 Olea europaea HOM05D007037 ORTHO05D006691 1.8e-12 75.5 78 51.3
Manes.16G006400 Manihot esculenta HOM05D007037 ORTHO05D006691 6.9e-12 73.6 80 48.8
Duzib192G0147 Durio zibethinus HOM05D007037 ORTHO05D006691 2.0e-11 72.0 79 51.9
Ciclev10018055m.g Citrus clementina HOM05D007037 ORTHO05D006691 3.4e-11 71.2 69 52.2
Manes.01G159201 Manihot esculenta HOM05D007037 ORTHO05D006691 3.4e-11 71.2 80 47.5
TPR.G13436 Trifolium pratense HOM05D007037 ORTHO05D006691 9.9e-11 69.7 80 52.5
COL.COLO4_00342 Corchorus olitorius HOM05D007037 ORTHO05D006691 1.3e-10 69.3 80 50.0
Eucgr.E04050 Eucalyptus grandis HOM05D007037 ORTHO05D006691 1.7e-10 68.9 81 50.6
Potri.004G013601 Populus trichocarpa HOM05D007037 ORTHO05D006691 2.2e-10 68.6 75 48.0
Potri.011G004400 Populus trichocarpa HOM05D007037 ORTHO05D006691 2.2e-10 68.6 76 51.3
CiPaw.09G092600 Carya illinoinensis HOM05D007037 ORTHO05D006691 3.8e-10 67.8 81 48.1
CSS0006945 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 6.4e-10 67.0 78 47.4
Atru.chr10.2236 Acer truncatum HOM05D007037 ORTHO05D006691 8.4e-10 66.6 76 50.0
Lsat_1_v5_gn_4_60821 Lactuca sativa HOM05D007037 ORTHO05D006691 8.4e-10 66.6 76 46.1
MD10G1322200 Malus domestica HOM05D007037 ORTHO05D006691 8.4e-10 66.6 80 45.0
Prupe.4G019700 Prunus persica HOM05D007037 ORTHO05D006691 8.4e-10 66.6 80 45.0
Dinv13899 Davidia involucrata HOM05D001191 ORTHO05D000979 1.4e-09 65.9 79 43.0
Gohir.A05G170900 Gossypium hirsutum HOM05D007037 ORTHO05D006691 1.9e-09 65.5 80 48.8
Gorai.009G179200 Gossypium raimondii HOM05D007037 ORTHO05D006691 1.9e-09 65.5 80 48.8
ECA234G0681 Erigeron canadensis HOM05D007037 ORTHO05D006691 2.4e-09 65.1 76 46.1
Nitab4.5_0009030g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 2.4e-09 65.1 79 45.6
Thhalv10009555m.g Eutrema salsugineum HOM05D001191 ORTHO05D000979 4.2e-09 64.3 69 49.3
Gohir.D05G173900 Gossypium hirsutum HOM05D007037 ORTHO05D006691 4.2e-09 64.3 80 47.5
MD05G1347800 Malus domestica HOM05D007037 ORTHO05D006691 4.2e-09 64.3 83 43.4
Nitab4.5_0000005g0340 Nicotiana tabacum HOM05D007037 ORTHO05D006691 4.2e-09 64.3 79 45.6
SalBow8G3366 Salvia bowleyana HOM05D007037 ORTHO05D006691 4.2e-09 64.3 50 58.0
CsaV3_6G049020 Cucumis sativus L. HOM05D007037 ORTHO05D006691 5.4e-09 63.9 77 49.4
TAR624G1029 Trochodendron aralioides HOM05D007037 ORTHO05D006691 5.4e-09 63.9 86 46.5
RcHm_v2.0_Chr5g0002881 Rosa chinensis HOM05D007037 ORTHO05D006691 7.1e-09 63.5 79 40.5
Sp1g10350 Schrenkiella parvula HOM05D001191 ORTHO05D000979 7.1e-09 63.5 66 51.5
BcaC05g25043 Brassica carinata HOM05D001191 ORTHO05D000979 2.1e-08 62.0 66 56.1
CSS0026389 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 2.7e-08 61.6 81 44.4
Carub.0001s1138 Capsella rubella HOM05D007037 ORTHO05D006691 2.7e-08 61.6 65 52.3
FAN25G2740 Fragaria x ananassa HOM05D007037 ORTHO05D006691 2.7e-08 61.6 76 42.1
THA.LOC104823525 Tarenaya hassleriana HOM05D007037 ORTHO05D006691 2.7e-08 61.6 66 53.0
ClCG01G021940 Citrullus lanatus HOM05D007037 ORTHO05D006691 3.5e-08 61.2 77 46.8
Hma1.2p1_0749F.1_g212630 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 3.5e-08 61.2 77 45.5
Hma1.2p1_0749F.1_g212635 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 3.5e-08 61.2 77 45.5
Sabra11G0003500 Salix brachista HOM05D007037 ORTHO05D006691 4.6e-08 60.8 70 48.6
CARHR012050 Cardamine hirsuta HOM05D007037 ORTHO05D006691 6.0e-08 60.5 65 52.3
CiPaw.10G071700 Carya illinoinensis HOM05D007037 ORTHO05D006691 6.0e-08 60.5 81 43.2
FAN21G2981 Fragaria x ananassa HOM05D001191 ORTHO05D000979 6.0e-08 60.5 79 40.5
A06p08290 Brassica napus HOM05D007037 ORTHO05D006691 7.9e-08 60.1 66 50.0
C05p09860 Brassica napus HOM05D007037 ORTHO05D006691 7.9e-08 60.1 66 50.0
AT1G11740 Arabidopsis thaliana HOM05D001191 ORTHO05D000979 1.0e-07 59.7 65 52.3
Cc09_g01610 Coffea canephora HOM05D007037 ORTHO05D006691 1.0e-07 59.7 77 44.2
Migut.M01325 Erythranthe guttata HOM05D007037 ORTHO05D006691 1.0e-07 59.7 78 41.0
Sabra04G0006400 Salix brachista HOM05D007037 ORTHO05D006691 1.0e-07 59.7 75 42.7
Sed0008683 Sechium edule HOM05D007037 ORTHO05D006691 1.0e-07 59.7 77 45.5
Sed0010286 Sechium edule HOM05D007037 ORTHO05D006691 1.0e-07 59.7 77 45.5
Nitab4.5_0005074g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 1.8e-07 58.9 80 43.8
Aa31LG1G3030 Aethionema arabicum HOM05D007037 ORTHO05D006691 2.3e-07 58.5 68 48.5
AL1G22910 Arabidopsis lyrata HOM05D001191 ORTHO05D000979 2.3e-07 58.5 65 50.8
DCAR_008156 Daucus carota HOM05D007037 ORTHO05D006691 2.3e-07 58.5 79 41.8
Nitab4.5_0002827g0030 Nicotiana tabacum HOM05D007037 ORTHO05D006691 2.3e-07 58.5 80 43.8
Peaxi162Scf01204g00120 Petunia axillaris HOM05D007037 ORTHO05D006691 3.0e-07 58.2 70 45.7
arahy.Tifrunner.gnm1.ann1.98H95S Arachis hypogaea HOM05D007037 ORTHO05D006691 6.7e-07 57.0 88 50.0
Peaxi162Scf00331g00119 Petunia axillaris HOM05D007037 ORTHO05D006691 6.7e-07 57.0 81 43.2
FvH4_3g01970 Fragaria vesca HOM05D007037 ORTHO05D006691 1.1e-06 56.2 79 38.0
BcaC04g22368 Brassica carinata HOM05D007037 ORTHO05D006691 1.5e-06 55.8 70 48.6
C09p20100 Brassica napus HOM05D007037 ORTHO05D006691 1.5e-06 55.8 70 48.6
BolC9t54919H Brassica oleracea HOM05D007037 ORTHO05D006691 1.5e-06 55.8 70 48.6
AL2G13860 Arabidopsis lyrata HOM05D007037 ORTHO05D006691 1.9e-06 55.5 64 46.9
arahy.Tifrunner.gnm1.ann1.CZMF37 Arachis hypogaea HOM05D007037 ORTHO05D006691 1.9e-06 55.5 87 49.4
EL10Ac8g20067 Beta vulgaris HOM05D007037 ORTHO05D006691 2.5e-06 55.1 65 46.2
A09p16540 Brassica napus HOM05D007037 ORTHO05D006691 2.5e-06 55.1 67 49.3
BraA09t37292Z Brassica rapa HOM05D007037 ORTHO05D006691 2.5e-06 55.1 67 49.3
HanXRQChr01g0004211 Helianthus annuus HOM05D007037 ORTHO05D006691 2.5e-06 55.1 66 42.4
AT1G62045 Arabidopsis thaliana HOM05D007037 ORTHO05D006691 3.3e-06 54.7 65 52.3
Sopen02g011150 Solanum pennellii HOM05D007037 ORTHO05D006691 3.3e-06 54.7 76 46.1
BcaB07g31300 Brassica carinata HOM05D007037 ORTHO05D006691 4.3e-06 54.3 67 49.3
PGSC0003DMG400019869 Solanum tuberosum HOM05D007037 ORTHO05D006691 7.4e-06 53.5 69 44.9
TAR626G0921 Trochodendron aralioides HOM05D007037 ORTHO05D006691 9.6e-06 53.1 66 48.5
vmacro15807 Vaccinium macrocarpon HOM05D007037 ORTHO05D006691 9.6e-06 53.1 52 55.8


User provided reference genes

Program Settings