Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 0.0e+00 2901.7 1539 100.0
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 2363.2 1550 83.2
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 2226.1 1546 79.6
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 0.0e+00 2123.6 2340 57.0
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 0.0e+00 1871.7 1574 68.0
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1848.6 1574 66.5
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 0.0e+00 1846.2 1550 67.6
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1841.2 1574 66.2
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1796.9 1596 62.1
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 0.0e+00 1783.1 1550 66.5
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 0.0e+00 1777.3 1560 65.8
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 0.0e+00 1700.6 1546 64.1
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1631.3 1565 59.9
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1627.8 1564 59.8
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 0.0e+00 1356.3 1557 52.0
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 0.0e+00 1354.7 1588 50.4
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 0.0e+00 1326.2 1568 49.7
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 0.0e+00 1320.8 1563 50.4
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 0.0e+00 1304.3 1586 51.6
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 0.0e+00 1269.2 1557 49.6
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 0.0e+00 1265.8 1572 50.7
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 0.0e+00 1260.7 1553 50.8
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 0.0e+00 1258.8 1566 48.8
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 0.0e+00 1256.1 1545 48.7
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 0.0e+00 1230.7 1559 50.7
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 0.0e+00 1228.8 1553 50.0
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1223.8 1801 45.9
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 0.0e+00 1211.8 1548 50.3
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 0.0e+00 1207.2 1537 46.5
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1206.0 1559 49.9
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1191.8 1578 47.0
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 0.0e+00 1166.0 1543 46.2
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 0.0e+00 1157.5 1562 45.8
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 0.0e+00 1155.2 1606 48.4
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 0.0e+00 1154.4 1564 48.3
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 0.0e+00 1145.6 1549 47.8
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 0.0e+00 1142.9 1538 45.3
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 0.0e+00 1137.9 1538 48.4
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 0.0e+00 1135.9 1552 46.5
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1130.9 1591 45.9
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 0.0e+00 1129.0 1559 47.0
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1128.6 1552 46.3
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 0.0e+00 1127.5 1540 48.3
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1119.4 1541 45.2
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 0.0e+00 1109.0 1559 47.6
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 0.0e+00 1104.7 1604 44.3
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 0.0e+00 1097.4 1538 46.7
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 0.0e+00 1094.3 1543 43.1
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 0.0e+00 1091.3 1563 47.1
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 0.0e+00 1090.5 1589 45.1
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 0.0e+00 1081.6 1562 46.4
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 1.1e-311 1073.5 1575 45.3
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 1.3e-310 1070.5 1578 46.6
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 2.1e-302 1043.1 1549 44.4
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 4.0e-301 1038.9 1553 44.8
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 5.7e-300 1035.0 1553 44.4
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 2.4e-298 1029.6 1563 44.5
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 3.5e-297 1025.8 1572 44.1
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 4.5e-297 1025.4 1566 44.6
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 1.0e-296 1024.2 1549 42.6
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 1.3e-296 1023.8 1571 43.7
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 6.1e-294 1015.0 1565 41.7
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 6.8e-293 1011.5 1563 41.5
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 8.8e-293 1011.1 1572 41.0
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 1.2e-292 1010.7 1575 41.9
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 1.3e-291 1007.3 1563 41.3
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 4.9e-291 1005.4 1570 45.9
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 1.6e-289 1000.3 1566 41.9
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 5.6e-287 991.9 1542 41.3
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 1.0e-285 987.6 1560 44.2
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 9.2e-282 974.5 1567 41.2
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 2.3e-280 969.9 1566 40.6
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 5.0e-280 968.8 1536 42.8
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 2.0e-273 946.8 1559 40.2
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 6.6e-272 941.8 1563 39.9
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 1.2e-270 937.6 1044 52.4
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 3.4e-268 929.5 1540 42.7
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 7.5e-268 928.3 912 56.1
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.3e-267 927.5 1593 43.3
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 3.7e-267 926.0 1636 42.2
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 2.4e-266 923.3 1542 41.6
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 2.7e-265 919.8 1434 43.0
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 1.7e-264 917.1 1549 41.6
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 4.9e-259 899.0 1610 38.7
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 2.9e-251 873.2 982 50.4
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 3.2e-250 869.8 752 61.7
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 3.3e-247 859.8 1390 40.4
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 1.0e-240 838.2 1552 37.5
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 3.9e-240 836.3 1401 39.5
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 1.8e-232 810.8 1601 39.4
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 8.7e-216 755.4 1551 38.2
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 4.1e-205 719.9 1497 35.9
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 5.2e-200 703.0 1245 42.6
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 4.5e-196 689.9 778 50.3
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 3.8e-195 686.8 1541 33.1
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 2.1e-193 681.0 1345 35.8
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 5.6e-170 603.2 1575 32.0
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 3.4e-167 594.0 547 58.1
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 5.4e-165 586.6 702 48.4
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 8.3e-158 562.8 883 40.7
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 4.1e-157 560.5 998 40.4
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 3.5e-148 530.8 1441 30.9
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 1.2e-143 515.8 1533 30.1
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 1.3e-123 449.1 432 58.1
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 3.4e-119 434.5 1541 27.7
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.8e-107 395.6 559 43.5
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 1.6e-105 389.0 529 54.1
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 9.4e-101 373.2 1555 28.4
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 3.6e-100 371.3 939 31.6
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.5e-95 355.9 490 41.0
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 9.4e-93 346.7 1530 28.0
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 1.3e-89 336.3 722 36.3
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.5e-87 329.3 632 38.9
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 1.2e-79 303.1 317 54.9
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 2.2e-78 298.9 318 53.8
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 5.5e-77 294.3 290 49.0
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 4.4e-66 258.1 227 63.9
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 2.4e-64 252.3 234 61.1
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.2e-49 202.6 267 46.1
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 3.9e-46 191.8 153 69.3
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 9.5e-45 187.2 232 48.7
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 3.7e-41 175.3 155 63.9
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 6.4e-41 174.5 663 25.9
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 1.3e-38 166.8 127 68.5
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.1e-37 163.7 235 37.4
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-36 160.2 716 25.1
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 3.4e-34 152.1 158 56.3
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 3.0e-30 139.0 213 42.3
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 9.5e-29 134.0 330 28.5
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.4e-26 125.6 585 25.0
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 1.9e-24 119.8 100 63.0
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 1.6e-23 116.7 362 27.6
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 2.1e-23 116.3 180 42.2
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 5.3e-19 101.7 98 59.2
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 9.3e-16 90.9 74 59.5
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 1.1e-13 84.0 71 62.0
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 3.3e-13 82.4 84 61.9
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 3.1e-11 75.9 54 68.5
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 4.0e-11 75.5 50 72.0
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 9.0e-11 74.3 240 28.3
Os07g0517400 Oryza sativa ssp. japonica HOM05D005165 ORTHO05D006361 1.4e-08 67.0 210 28.1
CiPaw.02G155600 Carya illinoinensis HOM05D005165 ORTHO05D006361 1.2e-07 63.9 75 50.7
Cfa022813 Carpinus fangiana HOM05D005165 ORTHO05D006361 1.6e-07 63.5 229 27.9
SHI35683 Sapria himalayana HOM05D000558 ORTHO05D001857 1.0e-06 60.8 163 31.3


User provided reference genes

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