Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G074700 Phaseolus vulgaris HOM05D007992 ORTHO05D010086 7.3e-32 139.8 65 100.0
Glyma.17G000900 Glycine max HOM05D007992 ORTHO05D010086 3.4e-29 131.0 63 95.2
Lj4g0012187 Lotus japonicus HOM05D007992 ORTHO05D010086 8.4e-28 126.3 63 92.1
QL02p099856 Quercus lobata HOM05D007992 ORTHO05D010086 9.3e-27 122.9 63 87.3
QL93p0310_0002 Quercus lobata HOM05D007992 ORTHO05D010086 9.3e-27 122.9 63 87.3
Potri.003G009800 Populus trichocarpa HOM05D007992 ORTHO05D010086 3.5e-26 120.9 63 87.3
Medtr4g134900 Medicago truncatula HOM05D007992 ORTHO05D010086 4.6e-26 120.6 63 85.7
CiPaw.05G051500 Carya illinoinensis HOM05D007992 ORTHO05D010086 1.8e-25 118.6 63 82.5
GSVIVG01023280001 Vitis vinifera HOM05D007992 ORTHO05D010086 2.3e-25 118.2 63 84.1
arahy.Tifrunner.gnm1.ann1.5LAZ71 Arachis hypogaea HOM05D007992 ORTHO05D010086 3.9e-25 117.5 63 82.5
arahy.Tifrunner.gnm1.ann1.UKT1PL Arachis hypogaea HOM05D007992 ORTHO05D010086 3.9e-25 117.5 63 82.5
Manes.10G120300 Manihot esculenta HOM05D007992 ORTHO05D010086 5.1e-25 117.1 63 85.7
TWI59G0747 Tripterygium wilfordii HOM05D007992 ORTHO05D010086 1.5e-24 115.5 63 82.5
PGR142G0328 Punica granatum HOM05D007992 ORTHO05D010086 1.9e-24 115.2 63 81.0
MD15G1432800 Malus domestica HOM05D007992 ORTHO05D010086 3.3e-24 114.4 61 83.6
Eucgr.I02752 Eucalyptus grandis HOM05D007992 ORTHO05D010086 4.3e-24 114.0 63 79.4
Prupe.1G576700 Prunus persica HOM05D007992 ORTHO05D010086 2.8e-23 111.3 61 85.2
THA.LOC104820254 Tarenaya hassleriana HOM05D007992 ORTHO05D010086 2.8e-23 111.3 63 77.8
Sed0016814 Sechium edule HOM05D007992 ORTHO05D010086 3.7e-23 110.9 63 77.8
CAN.G798.45 Capsicum annuum HOM05D007992 ORTHO05D010086 4.8e-23 110.5 63 79.4
Migut.B00791 Erythranthe guttata HOM05D007992 ORTHO05D010086 4.8e-23 110.5 60 80.0
RcHm_v2.0_Chr7g0220841 Rosa chinensis HOM05D007992 ORTHO05D010086 6.2e-23 110.2 57 86.0
Thhalv10009288m.g Eutrema salsugineum HOM05D007992 ORTHO05D010086 2.4e-22 108.2 63 76.2
HanXRQChr07g0187511 Helianthus annuus HOM05D007992 ORTHO05D010086 3.1e-22 107.8 60 76.7
AT1G09794 Arabidopsis thaliana HOM05D007992 ORTHO05D010086 5.3e-22 107.1 63 74.6
CSS0028556 Camellia sinensis var. sinensis HOM05D007992 ORTHO05D010086 5.3e-22 107.1 63 77.8
Carub.0001s0914 Capsella rubella HOM05D007992 ORTHO05D010086 5.3e-22 107.1 63 74.6
CARHR009770 Cardamine hirsuta HOM05D007992 ORTHO05D010086 5.3e-22 107.1 63 74.6
FAN18G3190 Fragaria x ananassa HOM05D007992 ORTHO05D010086 6.9e-22 106.7 57 84.2
Oeu045939.1 Olea europaea HOM05D007992 ORTHO05D010086 9.0e-22 106.3 60 76.7
FAN04G0058 Fragaria x ananassa HOM05D007992 ORTHO05D010086 1.5e-21 105.5 57 84.2
Lsat_1_v5_gn_7_79260 Lactuca sativa HOM05D007992 ORTHO05D010086 1.5e-21 105.5 60 76.7
CANSAT54G2040 Cannabis sativa HOM05D007992 ORTHO05D010086 2.0e-21 105.1 61 77.0
C05p07870 Brassica napus HOM05D007992 ORTHO05D010086 2.6e-21 104.8 63 76.2
BolC5t29538H Brassica oleracea HOM05D007992 ORTHO05D010086 2.6e-21 104.8 63 76.2
MELO3C031671.2 Cucumis melo HOM05D007992 ORTHO05D010086 3.4e-21 104.4 64 75.0
CsaV3_3G019300 Cucumis sativus L. HOM05D007992 ORTHO05D010086 3.4e-21 104.4 60 76.7
Peaxi162Scf00011g00937 Petunia axillaris HOM05D007992 ORTHO05D010086 4.5e-21 104.0 63 74.6
Aa31LG1G5180 Aethionema arabicum HOM05D007992 ORTHO05D010086 5.8e-21 103.6 63 74.6
A06p06460 Brassica napus HOM05D007992 ORTHO05D010086 5.8e-21 103.6 63 74.6
BraA06t23857Z Brassica rapa HOM05D007992 ORTHO05D010086 5.8e-21 103.6 63 74.6
Nitab4.5_0000948g0130 Nicotiana tabacum HOM05D007992 ORTHO05D010086 1.0e-20 102.8 63 73.0
Zm00001eb138500 Zea mays HOM05D007992 ORTHO05D010086 1.0e-20 102.8 63 74.6
Nn5g27747 Nelumbo nucifera HOM05D007992 ORTHO05D010086 1.3e-20 102.4 60 80.0
Os12g0182600 Oryza sativa ssp. japonica HOM05D007992 ORTHO05D010086 2.2e-20 101.7 63 73.0
vmacro01727 Vaccinium macrocarpon HOM05D007992 ORTHO05D010086 2.2e-20 101.7 73 67.1
Nitab4.5_0002596g0010 Nicotiana tabacum HOM05D007992 ORTHO05D010086 2.9e-20 101.3 63 71.4
Cc02_g22280 Coffea canephora HOM05D007992 ORTHO05D010086 6.5e-20 100.1 60 70.0
AUR62023424 Chenopodium quinoa HOM05D007992 ORTHO05D010086 8.4e-20 99.8 60 73.3
DCAR_025353 Daucus carota HOM05D007992 ORTHO05D010086 8.4e-20 99.8 61 73.8
EL10Ac1g00780 Beta vulgaris HOM05D007992 ORTHO05D010086 1.9e-19 98.6 60 73.3
PSO782G2589 Papaver somniferum HOM05D007992 ORTHO05D010086 1.9e-19 98.6 58 74.1
SalBow7G0224 Salvia bowleyana HOM05D007992 ORTHO05D010086 4.6e-18 94.0 68 63.2
Actinidia26161 Actinidia chinensis HOM05D000243 ORTHO05D010086 9.6e-16 86.3 44 86.4
Lalb_Chr13g0304491 Lupinus albus HOM05D007992 ORTHO05D010086 9.6e-16 86.3 62 66.1
Aqoxy6G00119 Aquilegia oxysepala HOM05D007992 ORTHO05D010086 1.1e-14 82.8 61 63.9
Sp1g08390 Schrenkiella parvula HOM05D007992 ORTHO05D010086 1.1e-14 82.8 63 63.5
AagrBONN_evm.TU.Sc2ySwM_228.5013 Anthoceros agrestis HOM05D007992 ORTHO05D010086 1.4e-14 82.4 53 64.2
MD08G1240200 Malus domestica HOM05D007992 ORTHO05D010086 1.8e-14 82.0 59 67.8
Pp3c6_8240 Physcomitrium patens HOM05D007992 ORTHO05D010086 2.2e-12 75.1 58 55.2
Gohir.D04G175400 Gossypium hirsutum HOM05D007992 ORTHO05D010086 6.5e-12 73.6 63 60.3
Gorai.012G166700 Gossypium raimondii HOM05D007992 ORTHO05D010086 6.5e-12 73.6 63 60.3
MBI09_g08443_MAGBIO Magnolia biondii HOM05D007992 ORTHO05D010086 6.5e-12 73.6 63 58.7
Thecc.02G025300 Theobroma cacao HOM05D007992 ORTHO05D010086 8.4e-12 73.2 63 60.3
Atru.chr6.758 Acer truncatum HOM05D007992 ORTHO05D010086 1.9e-11 72.0 63 58.7
Duzib132G0994 Durio zibethinus HOM05D007992 ORTHO05D010086 1.9e-11 72.0 36 91.7
CBR_g44919 Chara braunii HOM05D007992 ORTHO05D010086 7.2e-11 70.1 56 53.6
SMO367G0246 Selaginella moellendorffii HOM05D007992 ORTHO05D010086 9.3e-11 69.7 56 50.0
Gohir.A04G130200 Gossypium hirsutum HOM05D007992 ORTHO05D010086 1.2e-10 69.3 36 86.1
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 1.2e-10 69.3 57 56.1
CDE02G3423 Ceratophyllum demersum HOM05D007992 ORTHO05D010086 3.9e-09 64.3 37 73.0
TPR.G17560 Trifolium pratense HOM05D007992 ORTHO05D010086 1.9e-08 62.0 29 96.6
Sabra03G0005100 Salix brachista HOM05D007992 ORTHO05D010086 2.5e-08 61.6 35 74.3
PGSC0003DMG400024927 Solanum tuberosum HOM05D007992 ORTHO05D010086 2.5e-08 61.6 29 93.1
SGA_v2.0_scaffold272G46362 Striga asiatica HOM05D007992 ORTHO05D010086 3.3e-08 61.2 29 93.1
Rhsim11G0125500 Rhododendron simsii HOM05D007992 ORTHO05D010086 7.4e-08 60.1 32 78.1
unitig_26.g9026 Utricularia gibba HOM05D007992 ORTHO05D010086 9.7e-08 59.7 29 89.7
Migut.B00795 Erythranthe guttata HOM05D007992 ORTHO05D010086 1.1e-06 56.2 29 82.8


User provided reference genes

Program Settings