Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 1.0e-154 550.1 278 100.0
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 2.3e-135 485.7 291 85.2
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 4.0e-119 431.8 287 80.1
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 1.3e-114 416.8 287 77.7
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 3.2e-108 395.6 292 73.3
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 2.1e-107 392.9 291 73.2
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 1.0e-106 390.6 254 79.1
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 1.9e-105 386.3 226 85.4
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 1.4e-103 380.2 289 71.6
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 1.2e-102 377.1 283 71.4
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 1.2e-102 377.1 283 71.4
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 4.4e-102 375.2 223 85.2
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 4.4e-102 375.2 234 80.3
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 7.6e-102 374.4 283 70.7
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 6.4e-101 371.3 223 84.3
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 5.4e-100 368.2 283 70.3
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 7.1e-100 367.9 219 85.4
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 1.2e-99 367.1 279 71.3
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 1.6e-99 366.7 228 80.3
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 1.6e-99 366.7 269 72.9
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 2.1e-99 366.3 281 69.4
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 4.6e-99 365.2 283 72.4
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 1.3e-98 363.6 284 70.4
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 1.7e-98 363.2 225 82.2
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 3.9e-98 362.1 223 81.2
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 5.1e-98 361.7 258 72.5
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 8.7e-98 360.9 221 83.7
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 1.5e-97 360.1 223 81.6
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 1.5e-97 360.1 268 72.0
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 1.9e-97 359.8 288 67.0
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 1.9e-97 359.8 247 76.5
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 4.3e-97 358.6 279 70.3
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 9.6e-97 357.5 214 84.6
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 1.6e-96 356.7 223 81.2
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 2.1e-96 356.3 276 70.3
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 4.8e-96 355.1 279 69.9
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 8.1e-96 354.4 281 69.0
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 1.8e-95 353.2 214 84.1
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 1.8e-95 353.2 197 91.9
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 1.8e-95 353.2 268 70.9
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 3.1e-95 352.4 226 79.2
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 4.0e-95 352.1 223 79.8
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 4.0e-95 352.1 223 79.8
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 6.9e-95 351.3 258 74.0
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 9.0e-95 350.9 214 84.1
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 2.0e-94 349.7 276 70.3
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 2.0e-94 349.7 214 83.6
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 2.6e-94 349.4 224 78.6
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 9.9e-94 347.4 202 88.6
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 1.3e-93 347.1 223 80.7
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 1.3e-93 347.1 203 86.2
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 1.7e-93 346.7 282 68.4
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 1.7e-93 346.7 197 88.3
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 1.7e-93 346.7 224 81.2
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 1.7e-93 346.7 224 79.9
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 1.7e-93 346.7 224 79.9
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 2.2e-93 346.3 232 77.2
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 2.2e-93 346.3 226 80.5
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 2.2e-93 346.3 219 80.8
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 2.9e-93 345.9 284 66.5
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 3.8e-93 345.5 284 66.9
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 3.8e-93 345.5 214 81.3
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 6.4e-93 344.7 284 66.5
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 1.4e-92 343.6 286 67.8
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 1.9e-92 343.2 222 77.9
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 1.9e-92 343.2 193 89.1
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 2.4e-92 342.8 227 80.2
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 4.2e-92 342.0 202 85.6
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 5.4e-92 341.7 227 79.7
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 7.1e-92 341.3 247 70.4
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 1.2e-91 340.5 193 89.6
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 1.6e-91 340.1 272 67.6
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 4.6e-91 338.6 295 64.7
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 1.3e-90 337.0 197 85.3
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 1.8e-90 336.7 201 83.1
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 1.8e-90 336.7 272 69.5
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 6.7e-90 334.7 227 76.7
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 8.7e-90 334.3 297 63.3
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 1.1e-89 334.0 201 82.6
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 1.1e-89 334.0 233 75.1
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 1.5e-89 333.6 290 64.1
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 1.5e-89 333.6 213 79.8
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 1.9e-89 333.2 295 64.1
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 7.4e-89 331.3 284 64.8
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 7.4e-89 331.3 240 71.7
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 9.6e-89 330.9 192 86.5
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 1.3e-88 330.5 195 85.6
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 2.1e-88 329.7 290 64.1
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 2.8e-88 329.3 195 85.1
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 2.8e-88 329.3 195 85.1
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 2.8e-88 329.3 203 82.8
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 2.8e-88 329.3 213 79.8
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 4.8e-88 328.6 298 64.8
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 4.8e-88 328.6 298 64.8
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 6.2e-88 328.2 284 64.4
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 6.2e-88 328.2 294 62.9
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 8.1e-88 327.8 284 64.4
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 8.1e-88 327.8 250 72.0
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 1.1e-87 327.4 197 82.7
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 1.8e-87 326.6 214 78.5
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 2.4e-87 326.2 230 73.9
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 2.4e-87 326.2 217 74.2
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 5.3e-87 325.1 185 87.0
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 1.5e-86 323.6 233 73.0
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 8.4e-85 317.8 214 76.6
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 7.1e-84 314.7 281 62.6
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 2.3e-82 309.7 185 83.2
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 8.7e-82 307.8 184 81.5
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 2.5e-81 306.2 185 83.8
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 4.3e-81 305.4 185 83.8
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 2.8e-80 302.8 184 81.5
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 5.3e-79 298.5 338 53.0
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 1.1e-76 290.8 178 83.1
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 1.6e-75 287.0 196 77.6
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 2.7e-75 286.2 228 68.0
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 4.6e-75 285.4 157 92.4
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 2.4e-71 273.1 262 60.7
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 3.1e-71 272.7 178 79.8
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 1.4e-68 263.8 190 72.1
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 5.5e-68 261.9 224 65.6
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 1.6e-67 260.4 156 86.5
Lalb_Chr18g0044961 Lupinus albus HOM05D005420 ORTHO05D006524 4.8e-64 248.8 134 94.0
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 8.2e-64 248.1 160 75.6
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 1.2e-62 244.2 192 66.1
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 9.4e-60 234.6 160 71.2
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 5.1e-58 228.8 215 59.1
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 2.6e-57 226.5 191 67.5
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 1.7e-56 223.8 133 84.2
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 2.1e-43 180.3 133 69.2
Sed0016168 Sechium edule HOM05D005420 ORTHO05D006524 1.6e-38 164.1 90 93.3
MBI07_g42072_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 2.2e-37 160.2 89 89.9
CDE02G3676 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 3.8e-37 159.5 168 55.4
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 2.8e-32 143.3 158 50.6
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 1.8e-31 140.6 108 64.8
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 2.3e-29 133.7 108 61.1
Lsat_1_v5_gn_1_75001 Lactuca sativa HOM05D005420 ORTHO05D006524 2.2e-24 117.1 78 73.1
Lsat_1_v5_gn_5_160100 Lactuca sativa HOM05D005420 ORTHO05D006524 9.2e-23 111.7 78 69.2
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 1.4e-18 97.8 82 59.8
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 1.1e-15 88.2 183 37.2
Lalb_Chr18g0044971 Lupinus albus HOM05D005420 ORTHO05D006524 6.2e-11 72.4 108 42.6
Sed0003231 Sechium edule HOM05D005420 ORTHO05D006524 2.3e-10 70.5 67 53.7


User provided reference genes

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