Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 0.0e+00 1198.0 611 100.0
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 0.0e+00 1177.2 611 98.4
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 0.0e+00 1143.3 611 96.1
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 0.0e+00 1138.6 611 95.6
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 0.0e+00 1102.8 611 92.0
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 2.7e-309 1064.7 607 88.5
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 5.1e-300 1033.9 600 88.0
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 7.6e-288 993.4 607 84.0
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 7.8e-285 983.4 609 82.3
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 4.8e-282 974.2 603 81.9
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 2.4e-281 971.8 608 81.4
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 6.4e-279 963.8 609 82.1
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 2.4e-278 961.8 604 82.1
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 4.2e-278 961.1 605 81.3
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 1.6e-277 959.1 603 81.1
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 7.9e-277 956.8 602 81.2
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.5e-275 952.6 609 79.5
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 4.3e-275 951.0 608 80.1
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 1.6e-274 949.1 597 80.7
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 3.1e-273 944.9 613 80.1
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 2.6e-272 941.8 601 80.0
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 9.9e-272 939.9 604 80.0
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 9.9e-272 939.9 608 79.4
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 2.9e-271 938.3 605 78.8
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 1.9e-270 935.6 602 79.4
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 2.4e-270 935.3 610 78.2
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.4e-270 935.3 622 77.8
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 5.5e-270 934.1 610 78.2
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 1.2e-269 932.9 603 79.9
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 7.9e-269 930.2 604 78.5
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 7.9e-269 930.2 611 78.7
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 6.7e-268 927.2 601 78.7
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.5e-267 926.0 609 78.7
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 1.9e-267 925.6 596 80.2
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.1e-266 922.2 603 79.1
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 2.8e-266 921.8 613 79.9
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 3.7e-266 921.4 610 78.5
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 3.7e-266 921.4 597 79.4
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 4.8e-266 921.0 608 78.1
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.4e-265 919.5 604 77.8
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 2.4e-265 918.7 603 78.9
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 1.2e-264 916.4 603 78.4
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 2.0e-264 915.6 584 80.3
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.4e-264 914.8 599 78.8
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 3.4e-264 914.8 603 78.6
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 6.5e-263 910.6 610 77.0
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 1.9e-262 909.1 609 76.5
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 3.2e-262 908.3 599 77.3
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 7.1e-262 907.1 610 77.2
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 2.7e-261 905.2 610 77.0
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 2.7e-261 905.2 593 77.2
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 3.5e-261 904.8 622 76.0
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 4.6e-261 904.4 610 76.9
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 7.9e-261 903.7 608 76.2
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 2.3e-260 902.1 578 79.2
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.3e-260 902.1 613 77.7
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 3.0e-260 901.7 558 82.3
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 3.0e-260 901.7 558 82.3
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 3.0e-260 901.7 612 76.0
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 1.1e-259 899.8 605 77.9
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 2.5e-259 898.7 610 75.9
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 4.3e-259 897.9 612 77.0
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 7.4e-259 897.1 599 78.1
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 3.7e-258 894.8 610 75.7
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 1.1e-257 893.3 605 77.4
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.6e-256 888.6 602 77.1
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 5.0e-255 884.4 594 77.3
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 8.5e-255 883.6 609 76.5
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 1.9e-254 882.5 531 86.1
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 3.2e-254 881.7 616 75.8
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 3.2e-254 881.7 609 75.9
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 7.2e-254 880.6 609 75.9
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 7.2e-254 880.6 619 75.4
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 9.3e-254 880.2 600 75.7
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 2.7e-253 878.6 578 77.3
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 4.6e-253 877.9 619 75.3
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 1.0e-252 876.7 610 74.6
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 1.1e-251 873.2 601 75.4
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 8.2e-250 867.1 601 74.2
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 5.9e-248 860.9 544 80.5
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 7.9e-245 850.5 602 73.4
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 1.1e-243 846.7 520 81.9
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 3.3e-243 845.1 600 72.5
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 3.3e-243 845.1 608 72.9
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 2.2e-242 842.4 609 73.4
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 6.9e-241 837.4 564 77.7
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 2.0e-240 835.9 604 72.7
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 2.0e-240 835.9 603 73.5
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 3.8e-239 831.6 578 74.0
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 1.4e-238 829.7 674 66.3
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 2.5e-238 828.9 603 72.5
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 8.0e-237 823.9 577 73.3
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 2.6e-235 818.9 606 71.5
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 1.3e-234 816.6 571 74.6
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.3e-234 816.6 570 75.6
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 2.8e-234 815.5 604 72.5
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.8e-234 815.5 594 72.2
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 3.1e-233 812.0 577 74.4
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 4.1e-233 811.6 619 69.0
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 4.5e-232 808.1 571 74.3
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 1.0e-231 807.0 609 70.3
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 1.3e-231 806.6 577 73.8
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 6.5e-231 804.3 597 71.5
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 1.9e-230 802.7 597 71.4
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 4.2e-230 801.6 607 72.3
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 2.1e-229 799.3 572 74.1
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 3.6e-229 798.5 597 71.0
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 4.7e-229 798.1 569 73.6
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 6.7e-228 794.3 606 70.6
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 8.8e-228 793.9 600 70.3
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 8.8e-228 793.9 600 70.3
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 2.6e-227 792.3 605 69.8
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 2.6e-227 792.3 613 67.5
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 5.7e-227 791.2 588 69.9
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 7.5e-227 790.8 610 70.8
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 9.7e-227 790.4 577 73.5
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 6.3e-226 787.7 593 72.0
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 1.1e-225 786.9 575 73.4
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.2e-219 766.9 599 69.1
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 8.3e-218 760.8 594 69.9
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 9.1e-217 757.3 584 68.2
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 3.5e-216 755.4 521 74.5
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 3.8e-215 751.9 554 72.6
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 1.1e-214 750.4 608 66.8
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 2.5e-214 749.2 549 69.2
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 3.0e-212 742.3 582 67.9
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 5.7e-211 738.0 555 68.6
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 2.5e-206 722.6 589 66.0
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 3.6e-205 718.8 610 63.0
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.8e-204 716.5 519 70.9
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 1.4e-201 706.8 420 83.8
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 1.4e-201 706.8 579 65.5
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 3.0e-199 699.1 606 63.4
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 8.6e-199 697.6 527 69.4
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 1.1e-198 697.2 566 67.3
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.5e-198 696.8 529 68.4
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 8.9e-196 687.6 618 61.2
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 7.5e-195 684.5 412 83.0
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 1.2e-192 677.2 412 83.0
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.5e-192 675.6 414 81.6
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.3e-188 662.9 527 65.8
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 7.5e-187 657.9 495 67.9
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 2.9e-186 656.0 513 67.6
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 3.7e-186 655.6 528 64.4
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 1.2e-173 614.0 460 72.8
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 1.4e-164 583.9 575 54.3
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 6.2e-157 558.5 379 75.7
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 5.1e-151 538.9 524 58.2
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 2.1e-149 533.5 476 58.4
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 3.0e-143 513.1 336 78.3
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.1e-137 494.6 339 76.4
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 5.3e-132 475.7 458 57.2
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 3.4e-102 376.7 322 63.0
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 3.1e-71 273.9 157 87.3
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 1.9e-65 254.6 145 88.3
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 5.6e-49 199.9 163 63.8
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 2.8e-48 197.6 163 63.2
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 7.6e-46 189.5 161 63.4
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 4.9e-45 186.8 161 62.7
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 2.5e-36 157.9 98 80.6
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 2.5e-36 157.9 123 65.0
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 2.5e-25 121.3 94 66.0
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.2e-24 118.2 88 68.2
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 1.0e-21 109.4 115 53.0
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 6.5e-21 106.7 283 28.6
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.6e-19 100.5 285 28.8
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 1.0e-18 99.4 60 81.7
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 4.8e-16 90.5 123 39.8
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.8e-16 90.5 187 31.6
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.1e-15 89.4 185 35.7
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 1.5e-14 85.5 86 54.7
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 1.4e-12 79.0 70 68.6
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 3.2e-12 77.8 78 61.5
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 8.8e-10 69.7 74 56.8
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 1.7e-08 65.5 55 54.5
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 3.5e-06 57.8 55 56.4


User provided reference genes

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