Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 0.0e+00 1426.4 732 100.0
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 1.4e-309 1065.8 732 76.0
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 4.3e-298 1027.7 732 74.3
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 1.1e-280 969.9 623 82.0
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 9.9e-234 813.9 740 61.9
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 8.1e-228 794.3 744 60.5
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 6.4e-225 784.6 742 60.5
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 1.9e-221 773.1 743 58.8
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 3.6e-220 768.8 746 60.7
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 5.3e-195 685.3 746 55.5
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 1.4e-91 341.7 851 35.5
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 1.8e-89 334.7 298 62.1
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 2.3e-89 334.3 298 61.7
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 1.9e-88 331.3 390 48.7
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 4.3e-88 330.1 390 48.7
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 4.9e-84 316.6 841 33.2
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 2.4e-78 297.7 768 33.5
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 1.7e-76 291.6 429 42.7
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 8.4e-76 289.3 390 42.8
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 4.2e-75 287.0 437 41.2
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 5.5e-75 286.6 809 32.5
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 2.7e-74 284.3 426 43.4
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 4.6e-74 283.5 759 32.8
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 1.9e-72 278.1 773 33.0
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 2.5e-72 277.7 433 42.0
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 2.8e-71 274.2 501 37.9
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 2.6e-69 267.7 507 38.5
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 4.5e-69 266.9 459 39.7
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 3.8e-68 263.8 481 39.3
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 1.2e-66 258.8 429 41.5
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 2.1e-66 258.1 899 29.1
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 2.1e-66 258.1 487 37.6
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 1.8e-65 255.0 392 41.8
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 6.7e-65 253.1 424 41.0
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 8.8e-65 252.7 471 38.9
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 1.5e-64 251.9 385 40.3
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 1.3e-63 248.8 424 42.5
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 2.4e-62 244.6 896 30.2
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 9.1e-62 242.7 391 43.0
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 1.5e-61 241.9 325 43.4
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 3.4e-61 240.7 399 41.6
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 1.0e-60 239.2 452 37.4
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 2.5e-59 234.6 487 36.6
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 3.2e-59 234.2 486 36.8
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 1.6e-58 231.9 426 39.2
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 3.6e-58 230.7 745 28.5
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 3.9e-57 227.3 896 29.4
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 8.2e-55 219.5 117 90.6
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 3.1e-54 217.6 242 51.2
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 7.0e-54 216.5 778 31.0
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 1.2e-53 215.7 440 35.7
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 2.0e-53 214.9 430 34.7
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 4.5e-53 213.8 557 32.5
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 4.5e-53 213.8 429 34.7
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.3e-52 212.2 476 33.8
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 1.7e-52 211.8 429 34.5
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 1.1e-51 209.1 391 36.8
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 1.5e-51 208.8 476 33.6
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 5.5e-51 206.8 368 37.2
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 5.5e-51 206.8 438 34.0
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 5.2e-49 200.3 437 34.3
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 2.6e-48 198.0 392 33.9
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 4.4e-48 197.2 411 36.3
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 4.4e-48 197.2 473 32.6
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 2.8e-47 194.5 477 32.5
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 5.9e-45 186.8 430 31.6
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 2.9e-44 184.5 457 32.8
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 5.0e-44 183.7 428 32.2
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 5.5e-43 180.3 902 26.4
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.5e-40 172.2 748 27.4
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 2.6e-40 171.4 764 26.0
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 2.2e-39 168.3 232 38.8
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 1.4e-38 165.6 275 36.4
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 9.1e-38 162.9 764 26.4
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 1.2e-37 162.5 225 41.8
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 1.6e-37 162.2 794 26.4
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 2.0e-37 161.8 237 40.5
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.3e-36 159.1 224 41.5
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 1.7e-36 158.7 370 34.9
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 5.0e-36 157.1 451 31.5
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 5.0e-36 157.1 805 26.7
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 6.5e-36 156.8 758 28.8
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 1.1e-35 156.0 760 26.1
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 1.9e-35 155.2 454 32.2
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 2.5e-35 154.8 479 28.4
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 3.2e-35 154.5 755 26.8
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 9.4e-35 152.9 896 27.6
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 3.6e-34 151.0 756 28.7
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 6.1e-34 150.2 747 26.2
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 8.0e-34 149.8 761 26.4
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 1.4e-33 149.1 798 26.1
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 3.0e-33 147.9 756 28.6
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 1.2e-32 146.0 664 28.2
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 1.5e-32 145.6 640 27.7
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 2.0e-32 145.2 743 25.7
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 2.0e-32 145.2 254 38.2
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 3.4e-32 144.4 407 34.6
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 4.4e-32 144.1 749 27.8
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 5.7e-32 143.7 748 27.7
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 9.8e-32 142.9 201 40.8
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 1.3e-31 142.5 776 26.3
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 1.7e-31 142.1 490 31.0
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 3.7e-31 141.0 455 31.2
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 1.1e-30 139.4 761 25.9
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 1.8e-30 138.7 756 25.9
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 1.8e-30 138.7 727 26.4
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 8.6e-28 129.8 152 44.1
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 5.2e-25 120.6 385 31.4
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 6.8e-25 120.2 224 35.3
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 1.2e-24 119.4 745 24.6
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 2.6e-24 118.2 846 25.1
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 1.4e-22 112.5 752 24.7
MD17G1100100 Malus domestica HOM05D005385 ORTHO05D006768 2.1e-18 98.6 169 44.4
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 1.0e-17 96.3 270 29.3
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.0e-17 96.3 244 34.8
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 6.8e-17 93.6 230 34.3
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 4.4e-16 90.9 328 29.9
CDE05G0211 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 1.3e-15 89.4 339 29.2
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 6.4e-15 87.0 110 41.8
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.7e-12 79.0 236 31.4
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.7e-12 79.0 236 31.4
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 6.2e-10 70.5 109 37.6
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.4e-09 69.3 213 32.4
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 4.0e-09 67.8 164 34.1
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 7.5e-08 63.5 100 37.0
Os08g0447500 Oryza sativa ssp. japonica HOM05D033117 ORTHO05D037222 9.8e-08 63.2 433 26.1
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.7e-07 62.4 309 26.9


User provided reference genes

Program Settings