Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 1.8e-93 345.9 174 100.0
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 2.0e-68 262.7 175 78.9
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 6.3e-46 188.0 186 63.4
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 1.6e-44 183.3 187 64.2
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 1.2e-39 167.2 180 57.2
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 1.5e-39 166.8 188 54.3
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 5.0e-35 151.8 190 51.6
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 1.9e-34 149.8 180 52.2
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 1.2e-33 147.1 189 48.7
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 1.4e-32 143.7 194 49.5
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 1.5e-31 140.2 189 46.6
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 4.4e-31 138.7 194 44.8
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 4.5e-28 128.6 196 43.9
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 4.5e-28 128.6 196 43.9
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.0e-27 127.5 197 44.2
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 8.6e-27 124.4 188 44.1
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 1.9e-26 123.2 182 47.3
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 2.5e-26 122.9 167 49.7
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 2.5e-26 122.9 169 45.6
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 2.5e-26 122.9 167 47.9
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 4.2e-26 122.1 194 43.8
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 1.6e-25 120.2 200 41.5
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 2.1e-25 119.8 154 48.7
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 3.6e-25 119.0 179 46.4
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 3.6e-25 119.0 194 42.3
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 6.1e-25 118.2 197 42.1
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 8.0e-25 117.9 176 47.2
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 1.0e-24 117.5 179 46.4
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 1.0e-24 117.5 186 44.6
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.4e-24 117.1 180 43.3
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 4.0e-24 115.5 182 45.6
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 5.2e-24 115.2 180 43.3
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 5.2e-24 115.2 188 43.1
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.5e-23 113.6 183 42.6
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 4.4e-23 112.1 162 45.7
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 4.4e-23 112.1 180 41.1
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 2.2e-22 109.8 156 50.0
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 1.8e-21 106.7 170 42.9
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 1.8e-21 106.7 165 44.8
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 3.1e-21 105.9 150 45.3
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 5.4e-21 105.1 142 49.3
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 5.4e-21 105.1 178 39.3
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 7.0e-21 104.8 177 42.4
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 7.0e-21 104.8 167 43.7
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 9.2e-21 104.4 190 41.6
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 2.7e-20 102.8 168 41.7
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 4.5e-20 102.1 161 44.1
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 2.9e-19 99.4 143 49.0
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 2.9e-19 99.4 179 41.3
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 8.6e-19 97.8 193 39.4
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 3.3e-18 95.9 187 39.6
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 3.3e-18 95.9 178 37.6
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 4.3e-18 95.5 187 40.1
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 4.3e-18 95.5 158 41.8
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 1.2e-17 94.0 163 44.8
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 1.2e-17 94.0 190 40.5
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 1.6e-17 93.6 155 45.2
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 2.1e-17 93.2 181 36.5
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 2.8e-17 92.8 131 45.8
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 3.6e-17 92.4 159 40.3
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 4.7e-17 92.0 165 41.8
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 6.1e-17 91.7 183 38.8
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 8.0e-17 91.3 159 40.9
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 1.4e-16 90.5 169 39.1
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.8e-16 90.1 181 35.9
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 2.3e-16 89.7 189 41.3
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 3.0e-16 89.4 178 40.4
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 3.0e-16 89.4 189 40.7
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 4.0e-16 89.0 182 40.7
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 5.2e-16 88.6 128 46.1
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 6.8e-16 88.2 189 40.7
Sc04g0008280 Simmondsia chinensis HOM05D005097 ORTHO05D006186 8.9e-16 87.8 175 38.9
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 1.2e-15 87.4 148 43.2
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 1.5e-15 87.0 171 39.8
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 1.5e-15 87.0 164 41.5
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 1.5e-15 87.0 171 39.8
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 1.5e-15 87.0 128 47.7
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 2.0e-15 86.7 69 65.2
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 2.0e-15 86.7 121 47.1
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 2.0e-15 86.7 160 40.0
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 2.0e-15 86.7 166 40.4
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 2.6e-15 86.3 123 45.5
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 2.6e-15 86.3 165 40.0
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 2.6e-15 86.3 188 38.8
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 2.6e-15 86.3 188 38.8
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 3.4e-15 85.9 190 37.9
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 3.4e-15 85.9 164 40.9
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 3.4e-15 85.9 190 37.9
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 3.4e-15 85.9 190 37.9
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 3.4e-15 85.9 147 41.5
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 4.4e-15 85.5 183 40.4
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 5.8e-15 85.1 155 40.6
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 7.5e-15 84.7 80 52.5
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 7.5e-15 84.7 172 39.0
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 9.8e-15 84.3 159 39.0
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 1.3e-14 84.0 162 42.0
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 1.3e-14 84.0 162 42.0
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 1.3e-14 84.0 163 38.7
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 2.2e-14 83.2 183 40.4
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 2.2e-14 83.2 183 40.4
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 2.2e-14 83.2 183 37.7
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 1.1e-13 80.9 144 39.6
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 1.1e-13 80.9 144 39.6
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 1.8e-13 80.1 153 39.9
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 2.4e-13 79.7 147 38.8
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 2.4e-13 79.7 138 42.0
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 3.2e-13 79.3 177 37.9
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 3.2e-13 79.3 165 38.8
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 3.2e-13 79.3 160 38.8
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 3.2e-13 79.3 160 38.8
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 5.4e-13 78.6 172 35.5
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 5.4e-13 78.6 172 35.5
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 5.4e-13 78.6 154 42.9
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 5.4e-13 78.6 145 40.0
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 7.0e-13 78.2 77 55.8
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 9.2e-13 77.8 156 39.7
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 9.2e-13 77.8 158 38.6
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 1.2e-12 77.4 144 38.9
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 1.2e-12 77.4 144 38.9
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 1.6e-12 77.0 152 39.5
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 1.6e-12 77.0 177 37.9
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 1.6e-12 77.0 166 37.3
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 2.0e-12 76.6 163 38.0
Eucgr.G02516 Eucalyptus grandis HOM05D005097 ORTHO05D006186 2.0e-12 76.6 146 38.4
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 2.0e-12 76.6 170 38.8
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 3.5e-12 75.9 175 38.9
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 3.5e-12 75.9 161 38.5
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 4.6e-12 75.5 70 57.1
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 7.8e-12 74.7 150 36.7
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 1.0e-11 74.3 148 39.9
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 1.3e-11 73.9 81 54.3
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 3.0e-11 72.8 171 33.9
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 3.9e-11 72.4 107 47.7
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 5.0e-11 72.0 75 53.3
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 8.6e-11 71.2 74 52.7
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 2.5e-10 69.7 100 44.0
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 5.6e-10 68.6 70 51.4
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 7.3e-10 68.2 74 51.4
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 2.8e-09 66.2 179 34.1
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 6.8e-08 61.6 154 32.5
unitig_747.g21176 Utricularia gibba HOM05D005097 ORTHO05D006186 5.8e-07 58.5 145 35.2
HanXRQChr17g0545191 Helianthus annuus HOM05D005097 ORTHO05D006186 1.7e-06 57.0 72 44.4
BcaC08g45865 Brassica carinata HOM05D005097 ORTHO05D006186 3.7e-06 55.8 135 37.8


User provided reference genes

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