Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G064400 Phaseolus vulgaris HOM05D006540 ORTHO05D008202 4.3e-176 621.3 332 100.0
Glyma.17G134500 Glycine max HOM05D006540 ORTHO05D008202 2.3e-137 492.7 338 82.0
ClCG05G025710 Citrullus lanatus HOM05D006540 ORTHO05D008202 4.5e-125 451.8 348 71.8
Lj4g0023216 Lotus japonicus HOM05D006540 ORTHO05D008202 7.9e-122 441.0 338 73.4
arahy.Tifrunner.gnm1.ann1.LD9JWE Arachis hypogaea HOM05D006540 ORTHO05D008202 5.6e-120 434.9 349 72.2
CiPaw.05G182700 Carya illinoinensis HOM05D006540 ORTHO05D008202 1.1e-118 430.6 347 70.0
arahy.Tifrunner.gnm1.ann1.NX3C69 Arachis hypogaea HOM05D006540 ORTHO05D008202 3.1e-118 429.1 349 71.3
Atru.chr11.2104 Acer truncatum HOM05D006540 ORTHO05D008202 3.4e-117 425.6 346 68.5
VMungo0251G1250 Vigna mungo HOM05D006540 ORTHO05D008202 4.5e-117 425.2 264 89.4
Medtr8g069450 Medicago truncatula HOM05D006540 ORTHO05D008202 4.9e-116 421.8 335 70.4
MD13G1101900 Malus domestica HOM05D006540 ORTHO05D008202 1.1e-115 420.6 351 68.1
MD16G1102400 Malus domestica HOM05D006540 ORTHO05D008202 1.8e-113 413.3 351 66.7
Migut.K00595 Erythranthe guttata HOM05D006540 ORTHO05D008202 6.7e-113 411.4 351 65.5
Cfa009208 Carpinus fangiana HOM05D006540 ORTHO05D008202 8.7e-113 411.0 348 67.0
SalBow2G2200 Salvia bowleyana HOM05D006540 ORTHO05D008202 8.7e-113 411.0 354 65.0
RcHm_v2.0_Chr4g0432921 Rosa chinensis HOM05D006540 ORTHO05D008202 1.2e-109 400.6 356 63.5
Manes.13G024900 Manihot esculenta HOM05D006540 ORTHO05D008202 4.5e-109 398.7 344 67.2
MSTRG.568 Avicennia marina HOM05D006540 ORTHO05D008202 1.3e-108 397.1 349 64.8
Cpa.g.sc33.16 Carica papaya HOM05D006540 ORTHO05D008202 1.3e-108 397.1 353 64.3
Eucgr.B03288 Eucalyptus grandis HOM05D006540 ORTHO05D008202 6.5e-108 394.8 357 65.0
Ciclev10032003m.g Citrus clementina HOM05D006540 ORTHO05D008202 1.1e-107 394.0 347 65.7
Psat4g116680 Pisum sativum HOM05D006540 ORTHO05D008202 9.3e-107 391.0 349 66.8
Ca_22583_v3 Cicer arietinum L. HOM05D006540 ORTHO05D008202 1.2e-106 390.6 342 67.8
Thhalv10004491m.g Eutrema salsugineum HOM05D006540 ORTHO05D008202 1.2e-106 390.6 355 62.8
Oeu059907.1 Olea europaea HOM05D006540 ORTHO05D008202 1.2e-106 390.6 354 63.6
Aa31LG2G5960 Aethionema arabicum HOM05D006540 ORTHO05D008202 4.6e-106 388.7 354 61.3
FAN17G1845 Fragaria x ananassa HOM05D006540 ORTHO05D008202 6.1e-106 388.3 356 61.8
PGR102G2745 Punica granatum HOM05D006540 ORTHO05D008202 2.3e-105 386.3 351 64.1
Lalb_Chr05g0228421 Lupinus albus HOM05D006540 ORTHO05D008202 3.0e-105 386.0 334 66.2
FAN22G2305 Fragaria x ananassa HOM05D006540 ORTHO05D008202 5.1e-105 385.2 356 61.5
Prupe.1G243900 Prunus persica HOM05D006540 ORTHO05D008202 5.1e-105 385.2 349 63.0
FAN07G1259 Fragaria x ananassa HOM05D006540 ORTHO05D008202 6.7e-105 384.8 356 61.5
Duzib268G1404 Durio zibethinus HOM05D006540 ORTHO05D008202 8.7e-105 384.4 353 64.0
FvH4_4g25530 Fragaria vesca HOM05D006540 ORTHO05D008202 1.5e-104 383.6 356 61.2
FAN12G0822 Fragaria x ananassa HOM05D006540 ORTHO05D008202 1.5e-104 383.6 356 61.2
BcaC06g33900 Brassica carinata HOM05D006540 ORTHO05D008202 4.8e-103 378.6 352 62.2
vmacro16198 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 1.1e-102 377.5 357 60.8
A06p41910 Brassica napus HOM05D006540 ORTHO05D008202 1.4e-102 377.1 356 62.1
BraA06t27110Z Brassica rapa HOM05D006540 ORTHO05D008202 1.4e-102 377.1 356 62.1
C07p35560 Brassica napus HOM05D006540 ORTHO05D008202 4.1e-102 375.6 352 61.9
BolC7t44080H Brassica oleracea HOM05D006540 ORTHO05D008202 4.1e-102 375.6 352 61.9
Hma1.2p1_0223F.1_g093990 Hydrangea macrophylla HOM05D006540 ORTHO05D008202 5.3e-102 375.2 375 58.7
Cc11_g15700 Coffea canephora HOM05D006540 ORTHO05D008202 1.2e-101 374.0 348 63.2
Gorai.002G186600 Gossypium raimondii HOM05D006540 ORTHO05D008202 1.5e-101 373.6 355 62.8
Sp2g15690 Schrenkiella parvula HOM05D006540 ORTHO05D008202 1.5e-101 373.6 354 60.2
Actinidia37429 Actinidia chinensis HOM05D006540 ORTHO05D008202 2.6e-101 372.9 349 61.0
AL5G15370 Arabidopsis lyrata HOM05D006540 ORTHO05D008202 2.6e-101 372.9 352 61.1
CARHR147570 Cardamine hirsuta HOM05D006540 ORTHO05D008202 5.9e-101 371.7 357 61.9
Gohir.D01G150500 Gossypium hirsutum HOM05D006540 ORTHO05D008202 1.7e-100 370.2 355 62.5
CANSAT35G0572 Cannabis sativa HOM05D006540 ORTHO05D008202 5.0e-100 368.6 350 62.3
AT3G26580 Arabidopsis thaliana HOM05D006540 ORTHO05D008202 6.5e-100 368.2 353 60.6
EL10Ac6g13801 Beta vulgaris HOM05D006540 ORTHO05D008202 8.5e-100 367.9 349 61.0
Sabra13G0070200 Salix brachista HOM05D006540 ORTHO05D008202 1.2e-98 364.0 327 63.9
Potri.013G090000 Populus trichocarpa HOM05D006540 ORTHO05D008202 2.1e-98 363.2 327 64.2
QL03p058139 Quercus lobata HOM05D006540 ORTHO05D008202 2.1e-98 363.2 405 55.6
Dinv24788 Davidia involucrata HOM05D006540 ORTHO05D008202 3.6e-98 362.5 353 61.2
THA.LOC104825662 Tarenaya hassleriana HOM05D006540 ORTHO05D008202 1.0e-97 360.9 350 60.0
Haze_12245 Corylus avellana HOM05D006540 ORTHO05D008202 8.8e-97 357.8 367 58.9
BcaC06g31063 Brassica carinata HOM05D006540 ORTHO05D008202 1.5e-96 357.1 356 59.8
Lj6A811T79 Lonicera japonica HOM05D006540 ORTHO05D008202 1.5e-96 357.1 358 59.5
Rhsim12G0110600 Rhododendron simsii HOM05D006540 ORTHO05D008202 2.6e-96 356.3 358 58.4
TWI18G0987 Tripterygium wilfordii HOM05D006540 ORTHO05D008202 7.4e-96 354.8 352 59.7
PGSC0003DMG400018605 Solanum tuberosum HOM05D006540 ORTHO05D008202 6.3e-95 351.7 357 59.9
TAR622G1382 Trochodendron aralioides HOM05D006540 ORTHO05D008202 1.1e-94 350.9 352 57.1
vmacro01127 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 1.4e-94 350.5 347 59.4
Duzib248G0112 Durio zibethinus HOM05D006540 ORTHO05D008202 2.4e-94 349.7 352 61.1
Actinidia15092 Actinidia chinensis HOM05D006540 ORTHO05D008202 1.2e-93 347.4 349 58.2
Carub.0005s0457 Capsella rubella HOM05D006540 ORTHO05D008202 1.5e-93 347.1 350 58.0
CDE09G1037 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 1.5e-93 347.1 334 60.8
Peaxi162Scf00128g00138 Petunia axillaris HOM05D006540 ORTHO05D008202 5.9e-93 345.1 360 57.8
CDE02G2769 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 5.0e-92 342.0 332 59.0
COL.COLO4_24263 Corchorus olitorius HOM05D006540 ORTHO05D008202 5.0e-92 342.0 332 59.6
Gohir.A01G159600 Gossypium hirsutum HOM05D006540 ORTHO05D008202 2.5e-91 339.7 355 58.3
Thecc.02G259400 Theobroma cacao HOM05D006540 ORTHO05D008202 7.2e-91 338.2 353 58.9
Nitab4.5_0000007g0060 Nicotiana tabacum HOM05D006540 ORTHO05D008202 2.7e-90 336.3 355 58.3
DCAR_024432 Daucus carota HOM05D006540 ORTHO05D008202 6.1e-90 335.1 327 60.2
Nitab4.5_0003628g0010 Nicotiana tabacum HOM05D006540 ORTHO05D008202 6.1e-90 335.1 351 57.8
ECA233G5619 Erigeron canadensis HOM05D006540 ORTHO05D008202 5.2e-89 332.0 282 65.6
Aqoxy3G01202 Aquilegia oxysepala HOM05D006540 ORTHO05D008202 8.8e-89 331.3 351 57.0
GSVIVG01004073001 Vitis vinifera HOM05D006540 ORTHO05D008202 1.5e-88 330.5 196 82.1
Sc04g0009450 Simmondsia chinensis HOM05D006540 ORTHO05D008202 5.7e-88 328.6 350 56.6
AUR62024282 Chenopodium quinoa HOM05D006540 ORTHO05D008202 1.7e-87 327.0 334 57.8
Ah.03g133040 Amaranthus hybridus HOM05D006540 ORTHO05D008202 8.2e-87 324.7 351 57.8
PSO017G4849 Papaver somniferum HOM05D006540 ORTHO05D008202 8.2e-87 324.7 359 55.4
ATR0686G190 Amborella trichopoda HOM05D006540 ORTHO05D008202 1.8e-86 323.6 267 66.3
TPR.G17765 Trifolium pratense HOM05D006540 ORTHO05D008202 1.2e-85 320.9 316 60.4
unitig_21.g20872 Utricularia gibba HOM05D006540 ORTHO05D008202 2.6e-85 319.7 346 56.4
CSS0000303 Camellia sinensis var. sinensis HOM05D006540 ORTHO05D008202 4.5e-85 318.9 363 54.0
Lsat_1_v5_gn_8_152220 Lactuca sativa HOM05D006540 ORTHO05D008202 7.7e-85 318.2 366 54.6
Sopen05g008320 Solanum pennellii HOM05D006540 ORTHO05D008202 7.7e-85 318.2 358 55.9
Nn4g22628 Nelumbo nucifera HOM05D006540 ORTHO05D008202 1.7e-84 317.0 193 80.8
CAN.G832.5 Capsicum annuum HOM05D006540 ORTHO05D008202 3.8e-84 315.8 355 56.3
AUR62005459 Chenopodium quinoa HOM05D006540 ORTHO05D008202 8.8e-81 304.7 334 57.2
Rhsim12G0041000 Rhododendron simsii HOM05D006540 ORTHO05D008202 1.7e-79 300.4 430 48.8
HanXRQChr08g0208131 Helianthus annuus HOM05D006540 ORTHO05D008202 2.2e-79 300.1 373 53.1
PSO478G4529 Papaver somniferum HOM05D006540 ORTHO05D008202 5.3e-78 295.4 336 55.4
MELO3C011955.2 Cucumis melo HOM05D006540 ORTHO05D008202 2.9e-76 289.7 287 62.4
CsaV3_5G031170 Cucumis sativus L. HOM05D006540 ORTHO05D008202 8.5e-76 288.1 280 63.2
HPP92_002022 Vanilla planifolia HOM05D006540 ORTHO05D008202 8.0e-74 281.6 254 61.0
MBI10_g13027_MAGBIO Magnolia biondii HOM05D006540 ORTHO05D008202 1.3e-71 274.2 391 47.8
Sed0005489 Sechium edule HOM05D006540 ORTHO05D008202 3.1e-70 269.6 278 60.4
BcaB01g00564 Brassica carinata HOM05D006540 ORTHO05D008202 7.0e-70 268.5 229 64.2
Os03g0428800 Oryza sativa ssp. japonica HOM05D006540 ORTHO05D008202 1.1e-62 244.6 201 63.7
Zm00001eb096140 Zea mays HOM05D006540 ORTHO05D008202 6.8e-57 225.3 272 52.2
TAR374G0845 Trochodendron aralioides HOM05D006540 ORTHO05D008202 9.2e-54 214.9 282 53.5
AagrBONN_evm.TU.Sc2ySwM_340.367 Anthoceros agrestis HOM05D006540 ORTHO05D008202 5.0e-52 209.1 243 49.0
SEGI_37038 Sequoiadendron giganteum HOM05D006540 ORTHO05D008202 7.3e-51 205.3 173 57.2
SMO347G0417 Selaginella moellendorffii HOM05D006540 ORTHO05D008202 1.5e-48 197.6 238 47.1
Mapoly0037s0067 Marchantia polymorpha HOM05D006540 ORTHO05D008202 5.8e-48 195.7 238 48.7
Pp3c27_6670 Physcomitrium patens HOM05D006540 ORTHO05D008202 2.1e-45 187.2 193 49.7
BcaC06g33898 Brassica carinata HOM05D006540 ORTHO05D008202 1.6e-26 124.4 82 68.3
Cre12.g528050 Chlamydomonas reinhardtii HOM05D006540 ORTHO05D008202 1.0e-20 105.1 153 39.2
Oeu029879.1 Olea europaea HOM05D006540 ORTHO05D008202 2.5e-19 100.5 72 63.9
CBR_g8379 Chara braunii HOM05D006540 ORTHO05D008202 1.6e-18 97.8 140 40.0
RcHm_v2.0_Chr5g0067811 Rosa chinensis HOM05D006540 ORTHO05D008202 2.8e-18 97.1 61 83.6
MCO07G599 Micromonas commoda HOM05D006540 ORTHO05D008202 1.3e-15 88.2 136 37.5
PRCOL_00004949 Prasinoderma coloniale HOM05D006540 ORTHO05D008202 8.4e-15 85.5 210 31.4
QL04p066147 Quercus lobata HOM05D006540 ORTHO05D008202 1.1e-14 85.1 52 88.5
unitig_744.g24293 Utricularia gibba HOM05D006540 ORTHO05D008202 2.0e-08 64.3 44 59.1
Pp3c6_29630 Physcomitrium patens HOM05D006540 ORTHO05D008202 3.2e-06 57.0 92 37.0


User provided reference genes

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