Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G063800 Phaseolus vulgaris HOM05D006585 ORTHO05D007798 2.5e-164 582.0 294 100.0
Glyma.18G143200 Glycine max HOM05D006585 ORTHO05D007798 1.9e-135 486.1 298 82.9
VMungo0251G2192 Vigna mungo HOM05D006585 ORTHO05D007798 2.9e-128 462.2 275 86.9
Lj4g0008721 Lotus japonicus HOM05D006585 ORTHO05D007798 2.6e-108 396.0 302 70.2
arahy.Tifrunner.gnm1.ann1.I6QGYY Arachis hypogaea HOM05D006585 ORTHO05D007798 2.8e-107 392.5 301 67.4
Psat1g023160 Pisum sativum HOM05D006585 ORTHO05D007798 1.1e-106 390.6 299 69.9
Medtr2g079800 Medicago truncatula HOM05D006585 ORTHO05D007798 3.1e-106 389.0 301 70.1
arahy.Tifrunner.gnm1.ann1.QD46ZG Arachis hypogaea HOM05D006585 ORTHO05D007798 1.2e-105 387.1 301 66.8
Medtr8g069560 Medicago truncatula HOM05D006585 ORTHO05D007798 2.1e-102 376.3 324 64.5
Ca_22577_v3 Cicer arietinum L. HOM05D006585 ORTHO05D007798 1.3e-96 357.1 279 69.9
QL03p058556 Quercus lobata HOM05D006585 ORTHO05D007798 3.9e-80 302.4 290 57.6
Cfa009198 Carpinus fangiana HOM05D006585 ORTHO05D007798 1.7e-72 276.9 306 53.3
Lalb_Chr16g0392221 Lupinus albus HOM05D006585 ORTHO05D007798 1.9e-71 273.5 209 67.9
Duzib248G0505 Durio zibethinus HOM05D006585 ORTHO05D007798 4.3e-71 272.3 307 52.1
Thecc.02G257200 Theobroma cacao HOM05D006585 ORTHO05D007798 9.6e-71 271.2 314 50.3
Potri.010G044800 Populus trichocarpa HOM05D006585 ORTHO05D007798 1.5e-68 263.8 284 54.9
TWI36G0027 Tripterygium wilfordii HOM05D006585 ORTHO05D007798 5.4e-66 255.4 288 52.1
ClCG08G017740 Citrullus lanatus HOM05D006585 ORTHO05D007798 2.3e-64 250.0 300 47.0
Gorai.005G179800 Gossypium raimondii HOM05D006585 ORTHO05D007798 8.7e-64 248.1 306 48.7
RcHm_v2.0_Chr4g0433351 Rosa chinensis HOM05D006585 ORTHO05D007798 1.9e-63 246.9 330 44.8
CiPaw.05G183700 Carya illinoinensis HOM05D006585 ORTHO05D007798 3.3e-63 246.1 301 49.8
COL.COLO4_24245 Corchorus olitorius HOM05D006585 ORTHO05D002520 7.3e-63 245.0 287 48.8
Gohir.A03G136500 Gossypium hirsutum HOM05D006585 ORTHO05D007798 2.8e-62 243.0 285 50.2
MD13G1097800 Malus domestica HOM05D006585 ORTHO05D007798 1.4e-61 240.7 344 43.9
Sabra10G0023300 Salix brachista HOM05D000740 ORTHO05D003236 1.8e-61 240.4 322 47.2
Sed0016045 Sechium edule HOM05D006585 ORTHO05D007798 5.3e-61 238.8 287 46.7
Dinv24805 Davidia involucrata HOM05D006585 ORTHO05D007798 3.4e-60 236.1 304 48.0
CANSAT01G1755 Cannabis sativa HOM05D006585 ORTHO05D007798 5.8e-60 235.3 319 44.8
TAR371G0523 Trochodendron aralioides HOM05D006585 ORTHO05D007798 1.3e-59 234.2 298 47.7
Prupe.1G247600 Prunus persica HOM05D006585 ORTHO05D007798 1.4e-58 230.7 258 51.6
TWI75G0333 Tripterygium wilfordii HOM05D006585 ORTHO05D007798 2.4e-58 229.9 286 48.6
FvH4_4g25900 Fragaria vesca HOM05D006585 ORTHO05D007798 2.1e-57 226.9 330 42.4
Prupe.1G247500 Prunus persica HOM05D006585 ORTHO05D007798 3.5e-57 226.1 349 40.1
TPR.G34666 Trifolium pratense HOM05D006585 ORTHO05D007798 6.0e-57 225.3 171 69.0
Manes.13G025900 Manihot esculenta HOM05D006585 ORTHO05D007798 2.3e-56 223.4 287 51.6
FAN17G2552 Fragaria x ananassa HOM05D006585 ORTHO05D007798 2.5e-55 219.9 341 41.1
Ciclev10033875m.g Citrus clementina HOM05D006585 ORTHO05D007798 6.2e-54 215.3 306 46.7
Lj6C811T17 Lonicera japonica HOM05D006585 ORTHO05D007798 3.1e-53 213.0 311 45.3
THA.LOC104823651 Tarenaya hassleriana HOM05D006585 ORTHO05D007798 3.1e-53 213.0 294 44.2
GSVIVG01004087001 Vitis vinifera HOM05D006585 ORTHO05D007798 1.5e-52 210.7 306 46.4
Actinidia27800 Actinidia chinensis HOM05D006585 ORTHO05D007798 2.6e-52 209.9 321 43.3
MD13G1097900 Malus domestica HOM05D006585 ORTHO05D007798 2.6e-52 209.9 318 40.9
Cpa.g.sc33.3 Carica papaya HOM05D006585 ORTHO05D007798 5.8e-52 208.8 292 44.9
Aqoxy5G03808 Aquilegia oxysepala HOM05D006585 ORTHO05D007798 6.4e-51 205.3 308 43.8
FAN12G1097 Fragaria x ananassa HOM05D006585 ORTHO05D007798 1.2e-49 201.1 321 39.9
FAN12G1379 Fragaria x ananassa HOM05D006585 ORTHO05D007798 1.2e-49 201.1 321 39.9
Dinv20613 Davidia involucrata HOM05D006585 ORTHO05D007798 2.1e-49 200.3 286 43.0
Oeu049180.1 Olea europaea HOM05D006585 ORTHO05D007798 3.0e-48 196.4 286 43.4
DCAR_031138 Daucus carota HOM05D006585 ORTHO05D007798 3.9e-48 196.1 280 43.6
Gohir.D02G159700 Gossypium hirsutum HOM05D006585 ORTHO05D007798 2.5e-47 193.4 253 45.1
Sopen05g008150 Solanum pennellii HOM05D006585 ORTHO05D007798 5.6e-47 192.2 287 42.9
MBI10_g00733_MAGBIO Magnolia biondii HOM05D006585 ORTHO05D007798 1.0e-43 181.4 317 37.5
AT1G10710 Arabidopsis thaliana HOM05D006585 ORTHO05D007798 1.3e-43 181.0 348 35.1
Nn3g16750 Nelumbo nucifera HOM05D006585 ORTHO05D007798 4.9e-43 179.1 288 43.4
AL1G21590 Arabidopsis lyrata HOM05D006585 ORTHO05D007798 2.5e-42 176.8 333 36.9
Nitab4.5_0002255g0100 Nicotiana tabacum HOM05D006585 ORTHO05D007798 4.2e-42 176.0 271 42.1
Thhalv10007956m.g Eutrema salsugineum HOM05D006585 ORTHO05D007798 9.3e-42 174.9 353 34.8
MBI16_g23844_MAGBIO Magnolia biondii HOM05D006585 ORTHO05D007798 9.3e-42 174.9 307 38.4
Sp1g09410 Schrenkiella parvula HOM05D006585 ORTHO05D007798 1.2e-41 174.5 325 38.5
GSVIVG01007676001 Vitis vinifera HOM05D006585 ORTHO05D007798 1.2e-41 174.5 301 37.5
HanXRQChr17g0539731 Helianthus annuus HOM05D006585 ORTHO05D007798 2.1e-41 173.7 310 37.4
Carub.0001s1022 Capsella rubella HOM05D006585 ORTHO05D007798 6.0e-41 172.2 337 37.7
Sc04g0009420 Simmondsia chinensis HOM05D006585 ORTHO05D007798 7.9e-41 171.8 292 39.4
Glyma.08G283200 Glycine max HOM05D006585 ORTHO05D007798 1.0e-40 171.4 182 56.0
Peaxi162Scf00128g00033 Petunia axillaris HOM05D006585 ORTHO05D007798 3.9e-40 169.5 287 39.0
Solyc05g013360.3 Solanum lycopersicum HOM05D006585 ORTHO05D007798 6.7e-40 168.7 273 40.7
CARHR010890 Cardamine hirsuta HOM05D006585 ORTHO05D007798 8.2e-38 161.8 318 35.5
Lsat_1_v5_gn_3_28841 Lactuca sativa HOM05D006585 ORTHO05D007798 5.3e-37 159.1 312 36.5
Haze_12236 Corylus avellana HOM05D006585 ORTHO05D007798 9.0e-37 158.3 226 46.5
BcaC07g41800 Brassica carinata HOM05D006585 ORTHO05D007798 4.5e-36 156.0 339 34.5
SGA_v2.0_scaffold63G21726 Striga asiatica HOM05D006585 ORTHO05D007798 1.3e-35 154.5 297 34.7
BcaB08g37368 Brassica carinata HOM05D006585 ORTHO05D007798 6.5e-35 152.1 390 31.0
Nitab4.5_0002552g0050 Nicotiana tabacum HOM05D006585 ORTHO05D007798 8.5e-35 151.8 267 38.6
EL10Ac6g13783 Beta vulgaris HOM05D006585 ORTHO05D007798 7.2e-34 148.7 292 37.7
AUR62024297 Chenopodium quinoa HOM05D006585 ORTHO05D007798 2.1e-33 147.1 297 37.7
Aa31LG1G4120 Aethionema arabicum HOM05D006585 ORTHO05D007798 2.7e-33 146.7 267 36.3
C08p48610 Brassica napus HOM05D006585 ORTHO05D007798 3.6e-33 146.4 359 32.9
FAN07G1571 Fragaria x ananassa HOM05D006585 ORTHO05D007798 1.0e-32 144.8 156 48.7
TAR629G0056 Trochodendron aralioides HOM05D006585 ORTHO05D007798 1.8e-32 144.1 251 41.4
SGA_v2.0_scaffold87G27084 Striga asiatica HOM05D006585 ORTHO05D007798 6.7e-32 142.1 307 32.2
Ah.03g133160 Amaranthus hybridus HOM05D006585 ORTHO05D007798 8.7e-32 141.7 293 35.2
BraA09t41832Z Brassica rapa HOM05D006585 ORTHO05D007798 1.1e-31 141.4 364 31.0
ATR1154G038 Amborella trichopoda HOM05D006585 ORTHO05D007798 1.5e-31 141.0 294 37.1
COL.COLO4_30156 Corchorus olitorius HOM05D006585 ORTHO05D007798 1.5e-31 141.0 277 36.5
ECA246G2324 Erigeron canadensis HOM05D000225 ORTHO05D002520 2.8e-30 136.7 262 37.4
Migut.E00193 Erythranthe guttata HOM05D006585 ORTHO05D007798 2.8e-30 136.7 246 37.4
FAN22G0568 Fragaria x ananassa HOM05D006585 ORTHO05D007798 6.3e-30 135.6 171 45.0
BolC8t52400H Brassica oleracea HOM05D006585 ORTHO05D007798 5.3e-29 132.5 402 29.6
Cc11_g15560 Coffea canephora HOM05D006585 ORTHO05D007798 1.0e-27 128.3 305 35.1
A09p64570 Brassica napus HOM05D006585 ORTHO05D007798 2.5e-26 123.6 371 30.2
Zm00001eb382430 Zea mays HOM05D006585 ORTHO05D007798 8.8e-24 115.2 343 31.5
ATR1154G026 Amborella trichopoda HOM05D006585 ORTHO05D007798 4.4e-23 112.8 237 37.1
PGR119G1584 Punica granatum HOM05D006585 ORTHO05D007798 4.8e-22 109.4 292 32.9
Actinidia08143 Actinidia chinensis HOM05D006585 ORTHO05D007798 1.1e-21 108.2 352 31.0
Thecc.03G022200 Theobroma cacao HOM05D006585 ORTHO05D007798 4.5e-20 102.8 242 34.3
CSS0026295 Camellia sinensis var. sinensis HOM05D006585 ORTHO05D007798 3.8e-19 99.8 122 48.4
Atru.chr11.2134 Acer truncatum HOM05D006585 ORTHO05D007798 5.0e-19 99.4 129 49.6
Rhsim12G0041300 Rhododendron simsii HOM05D006585 ORTHO05D007798 5.5e-18 95.9 423 28.1
Lalb_Chr16g0392231 Lupinus albus HOM05D006585 ORTHO05D007798 1.2e-17 94.7 93 55.9
Atru.chr11.2118 Acer truncatum HOM05D006585 ORTHO05D007798 1.6e-17 94.4 129 48.1
PSO063G7660 Papaver somniferum HOM05D000629 ORTHO05D007798 2.1e-17 94.0 188 34.6
SalBow8G1297 Salvia bowleyana HOM05D006585 ORTHO05D007798 3.6e-17 93.2 129 41.1
Glyma.08G283250 Glycine max HOM05D006585 ORTHO05D007798 3.0e-16 90.1 60 68.3
HPP92_008331 Vanilla planifolia HOM05D006585 ORTHO05D007798 1.5e-15 87.8 136 36.0
PSO832G3049 Papaver somniferum HOM05D000629 ORTHO05D007798 3.3e-15 86.7 187 32.6
SHI17754 Sapria himalayana HOM05D006585 ORTHO05D007798 3.3e-15 86.7 220 30.0
Oeu056719.1 Olea europaea HOM05D006585 ORTHO05D007798 4.8e-14 82.8 169 34.9
Cc04_g11830 Coffea canephora HOM05D006585 ORTHO05D007798 7.0e-13 79.0 104 45.2
PSO832G2940 Papaver somniferum HOM05D006585 ORTHO05D007798 1.2e-12 78.2 126 38.1
HPP92_008334 Vanilla planifolia HOM05D034240 ORTHO05D007798 2.6e-12 77.0 205 28.8
SEGI_25539 Sequoiadendron giganteum HOM05D006585 ORTHO05D007798 1.3e-11 74.7 270 26.3
SalBow8G2270 Salvia bowleyana HOM05D006585 ORTHO05D007798 5.0e-11 72.8 195 32.3
SGA_v2.0_scaffold779G53588 Striga asiatica HOM05D006585 ORTHO05D007798 6.5e-11 72.4 95 36.8
EL10Ac5g10683 Beta vulgaris HOM05D006585 ORTHO05D007798 8.5e-11 72.0 113 39.8
SGA_v2.0_scaffold34G13586 Striga asiatica HOM05D006585 ORTHO05D007798 1.5e-10 71.2 95 36.8
PSO063G0496 Papaver somniferum HOM05D006585 ORTHO05D007798 2.5e-10 70.5 313 27.8
SHI17755 Sapria himalayana HOM05D006585 ORTHO05D007798 7.2e-10 68.9 161 36.6
AUR62005444 Chenopodium quinoa HOM05D006585 ORTHO05D007798 1.7e-06 57.8 217 31.8
CDE06G0796 Ceratophyllum demersum HOM05D006585 ORTHO05D007798 3.7e-06 56.6 305 26.9
DCAR_005656 Daucus carota HOM05D006585 ORTHO05D007798 4.8e-06 56.2 55 52.7


User provided reference genes

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