Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G054200 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 1.9e-107 392.5 194 100.0
Phvul.003G053900 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 1.4e-102 376.3 194 95.9
VMungo0251G2787 Vigna mungo HOM05D002799 ORTHO05D008889 1.2e-98 363.2 194 91.8
Glyma.18G134600 Glycine max HOM05D002799 ORTHO05D008889 3.2e-83 312.0 194 80.4
Glyma.08G289900 Glycine max HOM05D002799 ORTHO05D008889 2.6e-80 302.4 191 78.5
Medtr8g063470 Medicago truncatula HOM05D002799 ORTHO05D008889 3.6e-74 282.0 187 74.3
TPR.G670 Trifolium pratense HOM05D002799 ORTHO05D008889 4.4e-72 275.0 185 74.6
arahy.Tifrunner.gnm1.ann1.10QB4Z Arachis hypogaea HOM05D002799 ORTHO05D008889 6.1e-66 254.6 183 70.5
arahy.Tifrunner.gnm1.ann1.LMI616 Arachis hypogaea HOM05D002799 ORTHO05D008889 8.0e-66 254.2 183 70.5
arahy.Tifrunner.gnm1.ann1.B4EAVD Arachis hypogaea HOM05D002799 ORTHO05D008889 2.3e-65 252.7 183 69.9
arahy.Tifrunner.gnm1.ann1.31RF02 Arachis hypogaea HOM05D002799 ORTHO05D008889 3.0e-65 252.3 183 69.4
Lj4g0019925 Lotus japonicus HOM05D002799 ORTHO05D008889 1.2e-64 250.4 166 74.1
Lalb_Chr09g0335071 Lupinus albus HOM05D002799 ORTHO05D008889 2.2e-63 246.1 174 70.1
Manes.08G164500 Manihot esculenta HOM05D002799 ORTHO05D008889 7.5e-56 221.1 170 63.5
Haze_00591 Corylus avellana HOM05D002799 ORTHO05D008889 6.3e-55 218.0 170 63.5
QL09p025834 Quercus lobata HOM05D002799 ORTHO05D008889 6.3e-55 218.0 174 63.8
Ciclev10032834m.g Citrus clementina HOM05D002799 ORTHO05D008889 8.3e-55 217.6 178 62.9
TAR629G0193 Trochodendron aralioides HOM05D002799 ORTHO05D008889 1.8e-54 216.5 176 59.1
Prupe.2G323800 Prunus persica HOM05D002799 ORTHO05D008889 2.0e-53 213.0 180 60.0
Actinidia08736 Actinidia chinensis HOM05D002799 ORTHO05D008889 4.5e-53 211.8 174 59.8
Nn1g02011 Nelumbo nucifera HOM05D002799 ORTHO05D008889 4.5e-53 211.8 177 58.8
MD07G1305700 Malus domestica HOM05D002799 ORTHO05D008889 5.9e-53 211.5 184 59.2
Nitab4.5_0000207g0420 Nicotiana tabacum HOM05D002799 ORTHO05D008889 5.9e-53 211.5 176 60.2
CSS0012005 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 7.7e-53 211.1 174 59.2
CSS0036576 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 7.7e-53 211.1 174 59.2
Thecc.04G001600 Theobroma cacao HOM05D002799 ORTHO05D008889 7.7e-53 211.1 185 57.3
Rhsim03G0220500 Rhododendron simsii HOM05D000526 ORTHO05D000956 1.0e-52 210.7 173 60.1
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.3e-52 210.3 176 60.2
Cc05_g12950 Coffea canephora HOM05D002799 ORTHO05D008889 1.7e-52 209.9 172 59.3
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.9e-52 209.1 176 60.2
Nitab4.5_0002229g0090 Nicotiana tabacum HOM05D002799 ORTHO05D008889 2.9e-52 209.1 170 60.0
Dinv29173 Davidia involucrata HOM05D002799 ORTHO05D008889 3.8e-52 208.8 170 60.6
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 3.8e-52 208.8 176 60.8
FvH4_7g33591 Fragaria vesca HOM05D002799 ORTHO05D008889 5.0e-52 208.4 176 59.7
CAN.G1110.21 Capsicum annuum HOM05D002799 ORTHO05D008889 6.6e-52 208.0 174 59.2
Sopen10g002540 Solanum pennellii HOM05D002799 ORTHO05D008889 6.6e-52 208.0 170 59.4
CiPaw.05G237000 Carya illinoinensis HOM05D002799 ORTHO05D008889 8.6e-52 207.6 176 60.8
Eucgr.K03383 Eucalyptus grandis HOM05D002799 ORTHO05D008889 1.9e-51 206.5 170 58.8
Gohir.D11G175400 Gossypium hirsutum HOM05D002799 ORTHO05D008889 1.9e-51 206.5 174 59.8
FvH4_7g33580 Fragaria vesca HOM05D002799 ORTHO05D008889 2.5e-51 206.1 176 59.1
Gorai.007G188000 Gossypium raimondii HOM05D002799 ORTHO05D008889 2.5e-51 206.1 174 59.8
RcHm_v2.0_Chr1g0383841 Rosa chinensis HOM05D002799 ORTHO05D008889 3.3e-51 205.7 171 59.1
PGSC0003DMG400024993 Solanum tuberosum HOM05D002799 ORTHO05D008889 5.6e-51 204.9 176 59.7
Gohir.A11G169200 Gossypium hirsutum HOM05D002799 ORTHO05D008889 9.5e-51 204.1 174 59.2
Potri.019G048200 Populus trichocarpa HOM05D002799 ORTHO05D008889 9.5e-51 204.1 174 58.0
CANSAT21G1155 Cannabis sativa HOM05D002799 ORTHO05D008889 1.2e-50 203.8 170 59.4
Atru.chr12.2012 Acer truncatum HOM05D002799 ORTHO05D008889 2.1e-50 203.0 187 54.0
BcaB07g31750 Brassica carinata HOM05D002799 ORTHO05D008889 3.6e-50 202.2 179 55.3
Carub.0003s3061 Capsella rubella HOM05D002799 ORTHO05D008889 8.0e-50 201.1 180 53.9
MELO3C005426.2 Cucumis melo HOM05D002799 ORTHO05D008889 1.4e-49 200.3 174 56.3
Psat4g127040 Pisum sativum HOM05D002799 ORTHO05D008889 1.4e-49 200.3 137 72.3
DCAR_010548 Daucus carota HOM05D002799 ORTHO05D008889 1.8e-49 199.9 174 55.7
TWI60G0329 Tripterygium wilfordii HOM05D002799 ORTHO05D008889 1.8e-49 199.9 167 59.9
Sabra19G0057600 Salix brachista HOM05D002799 ORTHO05D008889 3.0e-49 199.1 183 55.2
Ca_14681_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 5.2e-49 198.4 137 71.5
Migut.M01834 Erythranthe guttata HOM05D002799 ORTHO05D008889 5.2e-49 198.4 178 53.9
A09p11140 Brassica napus HOM05D002799 ORTHO05D008889 6.8e-49 198.0 178 53.4
MSTRG.17884 Avicennia marina HOM05D002799 ORTHO05D008889 1.2e-48 197.2 179 55.9
BcaC04g23004 Brassica carinata HOM05D002799 ORTHO05D008889 1.5e-48 196.8 178 52.8
C09p13130 Brassica napus HOM05D002799 ORTHO05D008889 1.5e-48 196.8 178 52.8
CARHR107040 Cardamine hirsuta HOM05D002799 ORTHO05D008889 2.6e-48 196.1 184 53.8
ECA236G2689 Erigeron canadensis HOM05D002799 ORTHO05D008889 2.6e-48 196.1 171 59.6
AL3G49530 Arabidopsis lyrata HOM05D002799 ORTHO05D008889 3.4e-48 195.7 181 54.1
GSVIVG01024450001 Vitis vinifera HOM05D002799 ORTHO05D008889 9.8e-48 194.1 170 55.3
Sed0001745 Sechium edule HOM05D002799 ORTHO05D008889 1.7e-47 193.4 172 55.8
BraA09t36756Z Brassica rapa HOM05D002799 ORTHO05D008889 2.2e-47 193.0 175 53.1
AT2G16790 Arabidopsis thaliana HOM05D002799 ORTHO05D008889 6.4e-47 191.4 181 53.0
Aa31LG8G14030 Aethionema arabicum HOM05D002799 ORTHO05D008889 1.1e-46 190.7 174 52.9
CsaV3_5G005340 Cucumis sativus L. HOM05D002799 ORTHO05D008889 1.4e-46 190.3 172 54.7
AUR62028150 Chenopodium quinoa HOM05D002799 ORTHO05D008889 1.2e-45 187.2 174 55.2
EL10Ac3g05099 Beta vulgaris HOM05D002799 ORTHO05D008889 1.6e-45 186.8 170 56.5
Duzib133G0126 Durio zibethinus HOM05D002799 ORTHO05D008889 1.6e-45 186.8 167 56.9
vmacro06499 Vaccinium macrocarpon HOM05D002799 ORTHO05D008889 1.6e-45 186.8 155 58.7
Sp3g29930 Schrenkiella parvula HOM05D002799 ORTHO05D008889 2.0e-45 186.4 176 52.3
THA.LOC104803694 Tarenaya hassleriana HOM05D002799 ORTHO05D008889 3.5e-45 185.7 175 52.0
Lj1P1032T28 Lonicera japonica HOM05D002799 ORTHO05D008889 4.6e-45 185.3 157 59.9
BolC9t54208H Brassica oleracea HOM05D002799 ORTHO05D008889 7.8e-45 184.5 169 52.1
SGA_v2.0_scaffold70G23573 Striga asiatica HOM05D002799 ORTHO05D008889 1.7e-44 183.3 175 52.6
Peaxi162Scf00257g00081 Petunia axillaris HOM05D002799 ORTHO05D008889 3.9e-44 182.2 150 60.7
unitig_746.g26651 Utricularia gibba HOM05D002799 ORTHO05D008889 3.9e-44 182.2 171 53.8
TPR.G26908 Trifolium pratense HOM05D002799 ORTHO05D008889 5.0e-44 181.8 123 74.0
Ah.04g157280 Amaranthus hybridus HOM05D002799 ORTHO05D008889 1.1e-43 180.6 174 52.9
Nn3g19277 Nelumbo nucifera HOM05D002799 ORTHO05D008889 3.3e-43 179.1 150 57.3
Lsat_1_v5_gn_5_146100 Lactuca sativa HOM05D002799 ORTHO05D008889 4.3e-43 178.7 177 53.1
Os06g0114650 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D008889 4.3e-43 178.7 181 50.3
Thhalv10022876m.g Eutrema salsugineum HOM05D002799 ORTHO05D008889 2.1e-42 176.4 170 52.9
Lsat_1_v5_gn_8_74380 Lactuca sativa HOM05D002799 ORTHO05D008889 2.1e-42 176.4 172 54.1
Oeu053393.1 Olea europaea HOM05D002799 ORTHO05D008889 2.1e-42 176.4 155 56.1
PSO717G0064 Papaver somniferum HOM05D002799 ORTHO05D008889 8.0e-42 174.5 191 52.4
PSO675G5486 Papaver somniferum HOM05D002799 ORTHO05D008889 5.2e-41 171.8 191 51.3
Solyc10g006600.4 Solanum lycopersicum HOM05D002799 ORTHO05D008889 1.9e-38 163.3 135 58.5
COL.COLO4_19775 Corchorus olitorius HOM05D002799 ORTHO05D008889 4.1e-38 162.2 131 61.1
Aqoxy7G00884 Aquilegia oxysepala HOM05D002799 ORTHO05D008889 2.0e-37 159.8 138 54.3
AagrBONN_evm.TU.Sc2ySwM_362.1504 Anthoceros agrestis HOM05D002799 ORTHO05D008889 7.8e-37 157.9 180 46.7
Mapoly0046s0106 Marchantia polymorpha HOM05D002799 ORTHO05D008889 1.3e-36 157.1 182 47.3
ATR0829G224 Amborella trichopoda HOM05D002799 ORTHO05D008889 5.0e-36 155.2 193 44.0
ClCG01G005050 Citrullus lanatus HOM05D002799 ORTHO05D008889 6.6e-36 154.8 134 56.0
PGR004G1571 Punica granatum HOM05D002799 ORTHO05D008889 2.1e-34 149.8 130 56.9
Pp3c5_2750 Physcomitrium patens HOM05D002799 ORTHO05D008889 1.4e-33 147.1 199 43.7
Sc19g0000240 Simmondsia chinensis HOM05D002799 ORTHO05D008889 1.4e-33 147.1 141 48.9
SMO174G0264 Selaginella moellendorffii HOM05D002799 ORTHO05D008889 9.8e-32 141.0 180 45.0
Rhsim03G0164800 Rhododendron simsii HOM05D002799 ORTHO05D008889 4.3e-27 125.6 103 60.2
SHI03438 Sapria himalayana HOM05D002799 ORTHO05D008889 2.1e-26 123.2 139 44.6
MD01G1233600 Malus domestica HOM05D002799 ORTHO05D008889 1.4e-25 120.6 102 56.9
PSO675G4133 Papaver somniferum HOM05D002799 ORTHO05D008889 1.6e-21 107.1 152 42.8
HPP92_002455 Vanilla planifolia HOM05D002799 ORTHO05D008889 1.7e-20 103.6 176 38.1
Cre08.g385750 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D008889 6.6e-20 101.7 166 39.2
PRCOL_00003203 Prasinoderma coloniale HOM05D002799 ORTHO05D008889 1.8e-17 93.6 147 41.5
Cfa026682 Carpinus fangiana HOM05D002799 ORTHO05D008889 1.2e-16 90.9 149 36.9
MCO08G110 Micromonas commoda HOM05D002799 ORTHO05D008889 2.4e-14 83.2 155 34.8
BcaB03g16409 Brassica carinata HOM05D002799 ORTHO05D008889 4.2e-14 82.4 106 40.6
Ca_28676_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 9.6e-11 71.2 135 31.1
HanXRQChr10g0305151 Helianthus annuus HOM05D002799 ORTHO05D008889 1.6e-10 70.5 48 66.7
C07p06790 Brassica napus HOM05D002799 ORTHO05D008889 8.1e-10 68.2 122 32.8
Glyma.08G289700 Glycine max HOM05D002799 ORTHO05D008889 9.0e-09 64.7 36 86.1
Glyma.18G134800 Glycine max HOM05D002799 ORTHO05D008889 7.6e-08 61.6 37 83.8


User provided reference genes

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