Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 3.7e-67 258.1 129 100.0
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 2.2e-59 232.3 128 92.2
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 6.9e-58 227.3 127 90.6
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 6.7e-53 210.7 129 82.2
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 6.7e-53 210.7 127 84.3
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 2.2e-51 205.7 129 81.4
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 3.7e-51 204.9 120 84.2
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 1.8e-50 202.6 123 86.2
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 4.1e-50 201.4 127 78.7
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 5.3e-50 201.1 127 80.3
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 9.1e-50 200.3 123 85.4
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 4.2e-47 191.4 131 72.5
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 3.6e-46 188.3 127 74.8
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 4.0e-45 184.9 122 74.6
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 8.8e-45 183.7 127 72.4
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 2.2e-43 179.1 118 75.4
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 2.2e-43 179.1 118 76.3
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 2.8e-43 178.7 118 76.3
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 8.2e-43 177.2 127 71.7
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 8.2e-43 177.2 116 75.0
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 8.2e-43 177.2 116 76.7
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 1.4e-42 176.4 116 74.1
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 2.4e-42 175.6 127 71.7
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 2.4e-42 175.6 131 69.5
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 5.3e-42 174.5 127 68.5
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 7.0e-42 174.1 122 70.5
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 9.1e-42 173.7 116 75.0
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 1.2e-41 173.3 127 68.5
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 4.5e-41 171.4 119 70.6
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 7.7e-41 170.6 125 68.8
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 1.0e-40 170.2 116 73.3
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 1.0e-40 170.2 128 71.9
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 2.9e-40 168.7 116 72.4
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 2.9e-40 168.7 116 72.4
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 3.8e-40 168.3 118 71.2
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 3.8e-40 168.3 122 68.9
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 3.8e-40 168.3 126 69.0
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 6.5e-40 167.5 118 70.3
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 8.5e-40 167.2 118 73.7
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 8.5e-40 167.2 107 78.5
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 1.1e-39 166.8 120 71.7
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.1e-39 166.8 116 71.6
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 1.5e-39 166.4 120 67.5
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 2.5e-39 165.6 120 70.8
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 2.5e-39 165.6 121 67.8
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 4.2e-39 164.9 121 68.6
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 9.4e-39 163.7 119 66.4
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 1.6e-38 162.9 118 68.6
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 1.6e-38 162.9 118 67.8
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 4.7e-38 161.4 121 66.1
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 8.0e-38 160.6 118 67.8
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 8.0e-38 160.6 130 62.3
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 1.0e-37 160.2 126 64.3
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 2.3e-37 159.1 116 68.1
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 3.0e-37 158.7 129 65.9
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 4.0e-37 158.3 116 68.1
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 4.0e-37 158.3 112 73.2
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 5.2e-37 157.9 136 61.8
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 2.0e-36 156.0 116 69.0
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 4.4e-36 154.8 137 62.0
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 4.4e-36 154.8 122 64.8
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.2e-35 152.5 124 63.7
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 2.2e-35 152.5 121 63.6
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 3.7e-35 151.8 122 62.3
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.1e-34 150.2 124 62.9
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 1.8e-34 149.4 119 61.3
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.4e-34 149.1 124 62.9
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 3.1e-34 148.7 118 66.9
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 4.1e-34 148.3 118 66.9
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 4.1e-34 148.3 119 61.3
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 2.0e-33 146.0 127 59.8
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.5e-33 145.2 123 61.8
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 1.3e-32 143.3 151 51.7
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 1.7e-32 142.9 115 60.9
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 5.0e-32 141.4 121 62.8
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.5e-31 139.8 122 61.5
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 9.5e-31 137.1 122 60.7
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 9.5e-31 137.1 122 60.7
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 9.5e-31 137.1 122 59.0
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.2e-30 136.7 122 59.8
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.6e-30 136.3 118 62.7
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.6e-30 135.2 116 63.8
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 1.4e-29 133.3 127 52.8
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 2.3e-29 132.5 127 52.8
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 2.0e-28 129.4 116 58.6
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 2.6e-28 129.0 81 80.2
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 1.3e-27 126.7 119 59.7
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 1.3e-27 126.7 125 59.2
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 3.7e-27 125.2 83 75.9
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 3.7e-27 125.2 115 56.5
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 8.3e-27 124.0 89 73.0
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 1.6e-25 119.8 78 75.6
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 2.0e-25 119.4 118 53.4
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 3.5e-25 118.6 125 48.8
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 4.5e-25 118.2 125 49.6
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 7.8e-25 117.5 118 51.7
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 7.8e-25 117.5 118 50.8
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 1.7e-24 116.3 118 51.7
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 2.9e-24 115.5 115 53.0
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 5.0e-24 114.8 78 71.8
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 8.6e-24 114.0 118 50.8
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 1.1e-23 113.6 75 76.0
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 9.5e-23 110.5 128 47.7
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 9.5e-23 110.5 118 51.7
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 2.1e-22 109.4 78 67.9
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 8.0e-22 107.5 123 46.3
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.0e-21 107.1 118 49.2
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 2.3e-21 105.9 129 48.1
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 2.3e-21 105.9 129 47.3
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 3.0e-21 105.5 116 45.7
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 3.0e-21 105.5 116 45.7
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 8.9e-21 104.0 116 45.7
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 1.5e-20 103.2 107 55.1
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 2.0e-20 102.8 129 46.5
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 2.0e-20 102.8 129 46.5
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 1.7e-19 99.8 135 47.4
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 2.2e-19 99.4 120 45.0
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 2.2e-19 99.4 67 74.6
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 1.7e-16 89.7 57 78.9
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 3.9e-16 88.6 81 58.0
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 8.6e-16 87.4 56 76.8
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 6.2e-14 81.3 112 38.4
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 8.0e-14 80.9 64 60.9
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.1e-13 80.5 123 38.2
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 4.0e-13 78.6 118 38.1
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 5.2e-13 78.2 119 39.5
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 6.8e-13 77.8 127 38.6
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 1.2e-12 77.0 88 51.1
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.2e-12 77.0 136 38.2
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 9.8e-12 73.9 118 38.1
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 4.9e-11 71.6 118 36.4
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 1.4e-10 70.1 145 33.1
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 1.9e-10 69.7 124 37.1
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 7.0e-10 67.8 124 37.1
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 7.0e-10 67.8 124 37.1
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 7.0e-10 67.8 90 45.6
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 7.8e-09 64.3 75 42.7
RcHm_v2.0_Chr4g0444371 Rosa chinensis HOM05D005184 ORTHO05D006222 1.9e-07 59.7 41 65.9
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 5.6e-07 58.2 89 30.3
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 5.6e-07 58.2 102 32.4


User provided reference genes

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