Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G054000 Phaseolus vulgaris HOM05D003975 ORTHO05D009899 1.3e-44 182.6 85 100.0
Glyma.08G290000 Glycine max HOM05D003975 ORTHO05D009899 4.5e-37 157.5 85 85.9
Glyma.18G134500 Glycine max HOM05D003975 ORTHO05D009899 6.0e-34 147.1 85 78.8
Thecc.09G275700 Theobroma cacao HOM05D003975 ORTHO05D009899 1.3e-28 129.4 78 71.8
Gohir.A07G112200 Gossypium hirsutum HOM05D003975 ORTHO05D009899 2.2e-28 128.6 81 66.7
Duzib150G1666 Durio zibethinus HOM05D003975 ORTHO05D009899 3.8e-28 127.9 78 70.5
Gorai.001G124000 Gossypium raimondii HOM05D003975 ORTHO05D009899 6.4e-28 127.1 80 66.2
Gohir.D07G115700 Gossypium hirsutum HOM05D003975 ORTHO05D009899 1.1e-27 126.3 78 67.9
Thecc.09G155000 Theobroma cacao HOM05D003975 ORTHO05D009899 1.9e-27 125.6 80 67.5
Lalb_Chr09g0335081 Lupinus albus HOM05D003975 ORTHO05D009899 2.4e-27 125.2 78 73.1
arahy.Tifrunner.gnm1.ann1.QQFJ2J Arachis hypogaea HOM05D003975 ORTHO05D009899 3.2e-27 124.8 78 74.4
arahy.Tifrunner.gnm1.ann1.V52YDZ Arachis hypogaea HOM05D003975 ORTHO05D009899 3.2e-27 124.8 78 74.4
GSVIVG01036058001 Vitis vinifera HOM05D003975 ORTHO05D009899 1.6e-26 122.5 78 70.5
Cc01_g08600 Coffea canephora HOM05D003975 ORTHO05D009899 3.5e-26 121.3 85 62.4
CSS0027551 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009899 1.0e-25 119.8 78 67.9
ClCG02G022390 Citrullus lanatus HOM05D003975 ORTHO05D009899 1.0e-25 119.8 85 63.5
Prupe.6G140000 Prunus persica HOM05D003975 ORTHO05D009899 1.0e-25 119.8 78 69.2
QL01p011344 Quercus lobata HOM05D003975 ORTHO05D009899 1.0e-25 119.8 77 64.9
RcHm_v2.0_Chr5g0047291 Rosa chinensis HOM05D003975 ORTHO05D009899 1.0e-25 119.8 78 67.9
Dinv08130 Davidia involucrata HOM05D003975 ORTHO05D009899 1.3e-25 119.4 78 69.2
Atru.chr3.3141 Acer truncatum HOM05D003975 ORTHO05D009899 1.8e-25 119.0 78 67.9
Cfa009967 Carpinus fangiana HOM05D003975 ORTHO05D009899 2.3e-25 118.6 78 64.1
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 3.9e-25 117.9 78 67.9
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 5.1e-25 117.5 78 67.9
SalBow6G3564 Salvia bowleyana HOM05D003975 ORTHO05D009899 5.1e-25 117.5 78 61.5
Eucgr.J00540 Eucalyptus grandis HOM05D003975 ORTHO05D009899 6.7e-25 117.1 78 65.4
Solyc11g068810.2 Solanum lycopersicum HOM05D003975 ORTHO05D009899 6.7e-25 117.1 78 66.7
Sopen11g027530 Solanum pennellii HOM05D003975 ORTHO05D009899 6.7e-25 117.1 78 66.7
Hma1.2p1_0793F.1_g218650 Hydrangea macrophylla HOM05D003975 ORTHO05D009899 1.1e-24 116.3 78 67.9
TAR633G2299 Trochodendron aralioides HOM05D003975 ORTHO05D009899 1.1e-24 116.3 72 66.7
Migut.D02414 Erythranthe guttata HOM05D003975 ORTHO05D009899 1.5e-24 115.9 78 61.5
MD03G1152900 Malus domestica HOM05D003975 ORTHO05D009899 1.9e-24 115.5 78 65.4
PSO339G0200 Papaver somniferum HOM05D003975 ORTHO05D009899 1.9e-24 115.5 85 58.8
PSO384G0061 Papaver somniferum HOM05D003975 ORTHO05D009899 1.9e-24 115.5 85 58.8
Nitab4.5_0001135g0190 Nicotiana tabacum HOM05D003975 ORTHO05D009899 2.5e-24 115.2 78 64.1
Sed0002680 Sechium edule HOM05D003975 ORTHO05D009899 2.5e-24 115.2 85 63.5
TWI31G0968 Tripterygium wilfordii HOM05D003975 ORTHO05D009899 2.5e-24 115.2 85 62.4
Haze_23328 Corylus avellana HOM05D003975 ORTHO05D009899 3.3e-24 114.8 78 61.5
Nitab4.5_0000893g0020 Nicotiana tabacum HOM05D003975 ORTHO05D009899 3.3e-24 114.8 78 65.4
PGSC0003DMG400019630 Solanum tuberosum HOM05D003975 ORTHO05D009899 5.6e-24 114.0 78 65.4
ATR0772G086 Amborella trichopoda HOM05D003975 ORTHO05D009899 7.4e-24 113.6 85 56.5
DCAR_013070 Daucus carota HOM05D003975 ORTHO05D009899 7.4e-24 113.6 79 64.6
Nn6g34748 Nelumbo nucifera HOM05D003975 ORTHO05D009899 7.4e-24 113.6 85 60.0
CANSAT54G1521 Cannabis sativa HOM05D003975 ORTHO05D009899 9.6e-24 113.2 84 61.9
COL.COLO4_22656 Corchorus olitorius HOM05D003975 ORTHO05D009899 1.3e-23 112.8 86 61.6
Lsat_1_v5_gn_2_56181 Lactuca sativa HOM05D000240 ORTHO05D001153 1.3e-23 112.8 74 59.5
MBI01_g04527_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 2.1e-23 112.1 78 59.0
CAN.G745.37 Capsicum annuum HOM05D003975 ORTHO05D009899 2.8e-23 111.7 85 61.2
THA.LOC104799562 Tarenaya hassleriana HOM05D003975 ORTHO05D009899 4.8e-23 110.9 86 58.1
CAN.G745.38 Capsicum annuum HOM05D003975 ORTHO05D009899 6.2e-23 110.5 85 61.2
MELO3C014515.2 Cucumis melo HOM05D003975 ORTHO05D009899 6.2e-23 110.5 78 64.1
Potri.004G201000 Populus trichocarpa HOM05D003975 ORTHO05D009899 1.1e-22 109.8 86 59.3
Potri.009G162200 Populus trichocarpa HOM05D003975 ORTHO05D009899 1.8e-22 109.0 85 57.6
BcaC04g19558 Brassica carinata HOM05D003975 ORTHO05D009899 2.4e-22 108.6 85 58.8
A10p18580 Brassica napus HOM05D003975 ORTHO05D009899 2.4e-22 108.6 85 60.0
C09p54430 Brassica napus HOM05D003975 ORTHO05D009899 2.4e-22 108.6 85 58.8
BolC9t58312H Brassica oleracea HOM05D003975 ORTHO05D009899 2.4e-22 108.6 85 58.8
BraA10t43938Z Brassica rapa HOM05D003975 ORTHO05D009899 3.1e-22 108.2 85 60.0
Peaxi162Scf00224g00092 Petunia axillaris HOM05D003975 ORTHO05D009899 3.1e-22 108.2 74 60.8
Aqoxy4G02677 Aquilegia oxysepala HOM05D003975 ORTHO05D009899 4.0e-22 107.8 85 52.9
HanXRQChr09g0248811 Helianthus annuus HOM05D003975 ORTHO05D009899 5.3e-22 107.5 83 56.6
Sp6g23020 Schrenkiella parvula HOM05D003975 ORTHO05D009899 6.9e-22 107.1 86 59.3
AUR62011465 Chenopodium quinoa HOM05D003975 ORTHO05D009899 9.0e-22 106.7 78 59.0
unitig_0.g1469 Utricularia gibba HOM05D003975 ORTHO05D009899 9.0e-22 106.7 78 60.3
CARHR191340 Cardamine hirsuta HOM05D003975 ORTHO05D009899 1.2e-21 106.3 86 59.3
Sabra04G0136000 Salix brachista HOM05D003975 ORTHO05D009762 1.2e-21 106.3 64 70.3
AT5G22210 Arabidopsis thaliana HOM05D003975 ORTHO05D009899 2.6e-21 105.1 86 58.1
ECA238G1997 Erigeron canadensis HOM05D003975 ORTHO05D009899 2.6e-21 105.1 78 57.7
BcaB08g36448 Brassica carinata HOM05D003975 ORTHO05D009899 3.4e-21 104.8 85 57.6
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 5.8e-21 104.0 85 54.1
Sabra15G0031600 Salix brachista HOM05D003975 ORTHO05D009899 5.8e-21 104.0 85 54.1
Sabra15G0048400 Salix brachista HOM05D003975 ORTHO05D009899 5.8e-21 104.0 85 54.1
Sabra15G0060100 Salix brachista HOM05D003975 ORTHO05D009899 5.8e-21 104.0 85 54.1
Carub.0006s1995 Capsella rubella HOM05D003975 ORTHO05D009899 7.6e-21 103.6 86 55.8
HPP92_009773 Vanilla planifolia HOM05D000917 ORTHO05D009899 1.3e-20 102.8 79 54.4
Sabra15G0053200 Salix brachista HOM05D003975 ORTHO05D009899 2.2e-20 102.1 86 52.3
AL6G33210 Arabidopsis lyrata HOM05D003975 ORTHO05D009899 2.9e-20 101.7 86 57.0
AUR62016590 Chenopodium quinoa HOM05D003975 ORTHO05D009899 2.9e-20 101.7 78 57.7
Sabra15G0046300 Salix brachista HOM05D003975 ORTHO05D009899 2.9e-20 101.7 84 53.6
Sabra15G0052000 Salix brachista HOM05D003975 ORTHO05D009899 2.9e-20 101.7 84 53.6
Sabra15G0053900 Salix brachista HOM05D003975 ORTHO05D009899 2.9e-20 101.7 84 53.6
Sc03g0003650 Simmondsia chinensis HOM05D003975 ORTHO05D009899 2.9e-20 101.7 78 57.7
Ciclev10029713m.g Citrus clementina HOM05D003975 ORTHO05D009899 4.9e-20 100.9 85 58.8
HPP92_009742 Vanilla planifolia HOM05D000917 ORTHO05D000764 8.4e-20 100.1 80 53.8
CsaV3_6G038520 Cucumis sativus L. HOM05D003975 ORTHO05D009899 1.4e-19 99.4 80 55.0
Ah.01g020290 Amaranthus hybridus HOM05D003975 ORTHO05D009899 7.1e-19 97.1 85 51.8
EL10Ac9g21860 Beta vulgaris HOM05D003975 ORTHO05D009899 1.8e-17 92.4 78 51.3
TAR268G0001 Trochodendron aralioides HOM05D001423 ORTHO05D001412 2.4e-14 82.0 70 55.7
SEGI_31848 Sequoiadendron giganteum HOM05D003975 ORTHO05D009899 3.7e-07 58.2 85 37.6


User provided reference genes

Program Settings