Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G053900 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 5.3e-110 401.0 194 100.0
Phvul.003G054200 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 3.7e-103 378.3 194 95.9
VMungo0251G2787 Vigna mungo HOM05D002799 ORTHO05D008889 2.9e-100 368.6 194 91.8
Glyma.18G134600 Glycine max HOM05D002799 ORTHO05D008889 1.4e-83 313.2 194 79.9
Glyma.08G289900 Glycine max HOM05D002799 ORTHO05D008889 3.3e-80 302.0 191 77.5
Medtr8g063470 Medicago truncatula HOM05D002799 ORTHO05D008889 1.1e-72 276.9 187 72.7
TPR.G670 Trifolium pratense HOM05D002799 ORTHO05D008889 4.1e-70 268.5 185 72.4
Lj4g0019925 Lotus japonicus HOM05D002799 ORTHO05D008889 2.3e-65 252.7 166 73.5
arahy.Tifrunner.gnm1.ann1.10QB4Z Arachis hypogaea HOM05D002799 ORTHO05D008889 2.0e-64 249.6 183 68.9
arahy.Tifrunner.gnm1.ann1.LMI616 Arachis hypogaea HOM05D002799 ORTHO05D008889 2.6e-64 249.2 183 68.9
arahy.Tifrunner.gnm1.ann1.31RF02 Arachis hypogaea HOM05D002799 ORTHO05D008889 4.4e-64 248.4 183 68.3
arahy.Tifrunner.gnm1.ann1.B4EAVD Arachis hypogaea HOM05D002799 ORTHO05D008889 7.5e-64 247.7 183 68.3
Lalb_Chr09g0335071 Lupinus albus HOM05D002799 ORTHO05D008889 1.1e-62 243.8 174 68.4
Manes.08G164500 Manihot esculenta HOM05D002799 ORTHO05D008889 1.7e-55 219.9 170 62.9
Ciclev10032834m.g Citrus clementina HOM05D002799 ORTHO05D008889 1.8e-54 216.5 178 62.4
TAR629G0193 Trochodendron aralioides HOM05D002799 ORTHO05D008889 1.8e-54 216.5 176 59.1
Thecc.04G001600 Theobroma cacao HOM05D002799 ORTHO05D008889 5.4e-54 214.9 187 58.3
Haze_00591 Corylus avellana HOM05D002799 ORTHO05D008889 9.2e-54 214.2 170 62.4
QL09p025834 Quercus lobata HOM05D002799 ORTHO05D008889 1.2e-53 213.8 174 62.1
Nitab4.5_0000207g0420 Nicotiana tabacum HOM05D002799 ORTHO05D008889 5.9e-53 211.5 176 59.7
Prupe.2G323800 Prunus persica HOM05D002799 ORTHO05D008889 7.7e-53 211.1 180 58.9
Actinidia08736 Actinidia chinensis HOM05D002799 ORTHO05D008889 3.8e-52 208.8 174 58.6
Cc05_g12950 Coffea canephora HOM05D002799 ORTHO05D008889 3.8e-52 208.8 172 58.7
Dinv29173 Davidia involucrata HOM05D002799 ORTHO05D008889 3.8e-52 208.8 170 60.6
Gohir.D11G175400 Gossypium hirsutum HOM05D002799 ORTHO05D008889 3.8e-52 208.8 180 58.9
Gorai.007G188000 Gossypium raimondii HOM05D002799 ORTHO05D008889 5.0e-52 208.4 180 58.9
MD07G1305700 Malus domestica HOM05D002799 ORTHO05D008889 5.0e-52 208.4 184 58.2
Nn1g02011 Nelumbo nucifera HOM05D002799 ORTHO05D008889 5.0e-52 208.4 177 58.2
Eucgr.K03383 Eucalyptus grandis HOM05D002799 ORTHO05D008889 8.6e-52 207.6 170 58.8
Nitab4.5_0002229g0090 Nicotiana tabacum HOM05D002799 ORTHO05D008889 8.6e-52 207.6 170 59.4
Rhsim03G0220500 Rhododendron simsii HOM05D000526 ORTHO05D000956 8.6e-52 207.6 173 59.0
CSS0012005 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 1.1e-51 207.2 174 58.0
CSS0036576 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 1.1e-51 207.2 174 58.0
Gohir.A11G169200 Gossypium hirsutum HOM05D002799 ORTHO05D008889 1.9e-51 206.5 180 58.3
Atru.chr12.2012 Acer truncatum HOM05D002799 ORTHO05D008889 2.5e-51 206.1 187 54.5
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.5e-51 206.1 176 59.1
MELO3C005426.2 Cucumis melo HOM05D002799 ORTHO05D008889 3.3e-51 205.7 174 58.0
Potri.019G048200 Populus trichocarpa HOM05D002799 ORTHO05D008889 3.3e-51 205.7 174 58.0
Sopen10g002540 Solanum pennellii HOM05D002799 ORTHO05D008889 3.3e-51 205.7 176 57.4
CAN.G1110.21 Capsicum annuum HOM05D002799 ORTHO05D008889 5.6e-51 204.9 174 58.0
Ca_14681_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 5.6e-51 204.9 137 72.3
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 5.6e-51 204.9 176 59.1
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 7.3e-51 204.5 176 59.7
FvH4_7g33591 Fragaria vesca HOM05D002799 ORTHO05D008889 9.5e-51 204.1 176 58.5
CiPaw.05G237000 Carya illinoinensis HOM05D002799 ORTHO05D008889 2.8e-50 202.6 176 59.1
FvH4_7g33580 Fragaria vesca HOM05D002799 ORTHO05D008889 4.7e-50 201.8 176 58.0
CANSAT21G1155 Cannabis sativa HOM05D002799 ORTHO05D008889 6.1e-50 201.4 170 58.2
RcHm_v2.0_Chr1g0383841 Rosa chinensis HOM05D002799 ORTHO05D008889 6.1e-50 201.4 170 58.2
PGSC0003DMG400024993 Solanum tuberosum HOM05D002799 ORTHO05D008889 6.1e-50 201.4 176 58.0
Carub.0003s3061 Capsella rubella HOM05D002799 ORTHO05D008889 1.0e-49 200.7 180 53.9
DCAR_010548 Daucus carota HOM05D002799 ORTHO05D008889 3.0e-49 199.1 174 54.6
Sabra19G0057600 Salix brachista HOM05D002799 ORTHO05D008889 3.0e-49 199.1 183 54.6
ECA236G2689 Erigeron canadensis HOM05D002799 ORTHO05D008889 6.8e-49 198.0 171 59.6
BcaB07g31750 Brassica carinata HOM05D002799 ORTHO05D008889 8.9e-49 197.6 179 54.2
Migut.M01834 Erythranthe guttata HOM05D002799 ORTHO05D008889 8.9e-49 197.6 178 53.4
TWI60G0329 Tripterygium wilfordii HOM05D002799 ORTHO05D008889 8.9e-49 197.6 167 58.7
Psat4g127040 Pisum sativum HOM05D002799 ORTHO05D008889 1.2e-48 197.2 137 70.8
Sed0001745 Sechium edule HOM05D002799 ORTHO05D008889 1.2e-48 197.2 172 56.4
GSVIVG01024450001 Vitis vinifera HOM05D002799 ORTHO05D008889 1.2e-48 197.2 170 55.3
CARHR107040 Cardamine hirsuta HOM05D002799 ORTHO05D008889 2.6e-48 196.1 184 53.3
A09p11140 Brassica napus HOM05D002799 ORTHO05D008889 3.4e-48 195.7 178 52.8
CsaV3_5G005340 Cucumis sativus L. HOM05D002799 ORTHO05D008889 4.4e-48 195.3 172 56.4
AL3G49530 Arabidopsis lyrata HOM05D002799 ORTHO05D008889 7.5e-48 194.5 175 54.3
MSTRG.17884 Avicennia marina HOM05D002799 ORTHO05D008889 7.5e-48 194.5 179 54.7
BcaC04g23004 Brassica carinata HOM05D002799 ORTHO05D008889 7.5e-48 194.5 178 52.2
C09p13130 Brassica napus HOM05D002799 ORTHO05D008889 7.5e-48 194.5 178 52.2
BraA09t36756Z Brassica rapa HOM05D002799 ORTHO05D008889 4.9e-47 191.8 175 52.6
Duzib133G0126 Durio zibethinus HOM05D002799 ORTHO05D008889 1.1e-46 190.7 167 57.5
AT2G16790 Arabidopsis thaliana HOM05D002799 ORTHO05D008889 1.4e-46 190.3 175 53.1
Aa31LG8G14030 Aethionema arabicum HOM05D002799 ORTHO05D008889 2.4e-46 189.5 174 52.3
Sp3g29930 Schrenkiella parvula HOM05D002799 ORTHO05D008889 2.0e-45 186.4 176 52.3
Lj1P1032T28 Lonicera japonica HOM05D002799 ORTHO05D008889 2.7e-45 186.0 157 59.9
THA.LOC104803694 Tarenaya hassleriana HOM05D002799 ORTHO05D008889 2.7e-45 186.0 175 52.0
unitig_746.g26651 Utricularia gibba HOM05D002799 ORTHO05D008889 4.6e-45 185.3 174 51.1
vmacro06499 Vaccinium macrocarpon HOM05D002799 ORTHO05D008889 4.6e-45 185.3 155 58.1
BolC9t54208H Brassica oleracea HOM05D002799 ORTHO05D008889 5.9e-45 184.9 169 52.1
Peaxi162Scf00257g00081 Petunia axillaris HOM05D002799 ORTHO05D008889 1.7e-44 183.3 150 60.7
Lsat_1_v5_gn_5_146100 Lactuca sativa HOM05D002799 ORTHO05D008889 2.3e-44 183.0 177 53.1
EL10Ac3g05099 Beta vulgaris HOM05D002799 ORTHO05D008889 3.0e-44 182.6 170 54.7
Lsat_1_v5_gn_8_74380 Lactuca sativa HOM05D002799 ORTHO05D008889 6.6e-44 181.4 172 54.1
AUR62028150 Chenopodium quinoa HOM05D002799 ORTHO05D008889 8.6e-44 181.0 174 52.9
SGA_v2.0_scaffold70G23573 Striga asiatica HOM05D002799 ORTHO05D008889 1.1e-43 180.6 175 51.4
Ah.04g157280 Amaranthus hybridus HOM05D002799 ORTHO05D008889 3.3e-43 179.1 174 52.9
Os06g0114650 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D008889 3.3e-43 179.1 171 51.5
TPR.G26908 Trifolium pratense HOM05D002799 ORTHO05D008889 4.3e-43 178.7 123 72.4
Oeu053393.1 Olea europaea HOM05D002799 ORTHO05D008889 5.6e-43 178.3 161 55.3
Nn3g19277 Nelumbo nucifera HOM05D002799 ORTHO05D008889 7.3e-43 177.9 150 57.3
Thhalv10022876m.g Eutrema salsugineum HOM05D002799 ORTHO05D008889 2.1e-42 176.4 170 52.4
PSO717G0064 Papaver somniferum HOM05D002799 ORTHO05D008889 1.0e-41 174.1 191 51.8
PSO675G5486 Papaver somniferum HOM05D002799 ORTHO05D008889 6.8e-41 171.4 191 50.8
COL.COLO4_19775 Corchorus olitorius HOM05D002799 ORTHO05D008889 1.2e-40 170.6 131 62.6
Solyc10g006600.4 Solanum lycopersicum HOM05D002799 ORTHO05D008889 1.9e-38 163.3 141 56.7
Aqoxy7G00884 Aquilegia oxysepala HOM05D002799 ORTHO05D008889 3.2e-38 162.5 138 55.1
ClCG01G005050 Citrullus lanatus HOM05D002799 ORTHO05D008889 1.7e-36 156.8 134 57.5
Mapoly0046s0106 Marchantia polymorpha HOM05D002799 ORTHO05D008889 1.7e-36 156.8 182 47.3
AagrBONN_evm.TU.Sc2ySwM_362.1504 Anthoceros agrestis HOM05D002799 ORTHO05D008889 2.3e-36 156.4 180 45.6
PGR004G1571 Punica granatum HOM05D002799 ORTHO05D008889 1.1e-35 154.1 130 57.7
ATR0829G224 Amborella trichopoda HOM05D002799 ORTHO05D008889 3.3e-35 152.5 193 43.0
Sc19g0000240 Simmondsia chinensis HOM05D002799 ORTHO05D008889 1.4e-33 147.1 141 48.9
Pp3c5_2750 Physcomitrium patens HOM05D002799 ORTHO05D008889 6.8e-33 144.8 199 43.7
SMO174G0264 Selaginella moellendorffii HOM05D002799 ORTHO05D008889 2.9e-31 139.4 180 44.4
SHI03438 Sapria himalayana HOM05D002799 ORTHO05D008889 1.6e-26 123.6 139 44.6
Rhsim03G0164800 Rhododendron simsii HOM05D002799 ORTHO05D008889 2.1e-26 123.2 103 58.3
MD01G1233600 Malus domestica HOM05D002799 ORTHO05D008889 2.8e-26 122.9 110 52.7
PSO675G4133 Papaver somniferum HOM05D002799 ORTHO05D008889 3.2e-22 109.4 152 43.4
Cre08.g385750 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D008889 3.0e-20 102.8 166 39.2
HPP92_002455 Vanilla planifolia HOM05D002799 ORTHO05D008889 5.1e-20 102.1 176 36.9
PRCOL_00003203 Prasinoderma coloniale HOM05D002799 ORTHO05D008889 3.3e-19 99.4 147 42.9
Cfa026682 Carpinus fangiana HOM05D002799 ORTHO05D008889 6.9e-17 91.7 158 34.8
MCO08G110 Micromonas commoda HOM05D002799 ORTHO05D008889 1.4e-14 84.0 155 35.5
BcaB03g16409 Brassica carinata HOM05D002799 ORTHO05D008889 7.1e-14 81.6 110 38.2
Ca_28676_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 1.1e-11 74.3 163 28.8
C07p06790 Brassica napus HOM05D002799 ORTHO05D008889 4.8e-10 68.9 122 32.8
HanXRQChr10g0305151 Helianthus annuus HOM05D002799 ORTHO05D008889 8.1e-10 68.2 48 62.5
Glyma.08G289700 Glycine max HOM05D002799 ORTHO05D008889 4.5e-08 62.4 35 85.7
Glyma.18G134800 Glycine max HOM05D002799 ORTHO05D008889 7.6e-08 61.6 37 83.8


User provided reference genes

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