Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G053700 Phaseolus vulgaris HOM05D008443 ORTHO05D010587 3.7e-32 141.0 72 100.0
Glyma.18G135000 Glycine max HOM05D008443 ORTHO05D010587 1.1e-28 129.4 71 90.1
VMungo0251G0489 Vigna mungo HOM05D008443 ORTHO05D010587 1.3e-26 122.5 71 93.0
Glyma.08G289300 Glycine max HOM05D008443 ORTHO05D010587 6.7e-26 120.2 74 85.1
TPR.G35976 Trifolium pratense HOM05D008443 ORTHO05D010587 7.9e-19 96.7 72 69.4
Lalb_Chr16g0382381 Lupinus albus HOM05D008443 ORTHO05D010587 9.7e-17 89.7 71 60.6
Manes.05G088700 Manihot esculenta HOM05D008443 ORTHO05D010587 4.8e-16 87.4 70 61.4
Manes.01G198240 Manihot esculenta HOM05D008443 ORTHO05D010587 1.8e-15 85.5 69 59.4
Medtr8g063410 Medicago truncatula HOM05D008443 ORTHO05D010587 9.0e-15 83.2 73 58.9
QL03p061920 Quercus lobata HOM05D008443 ORTHO05D010587 1.5e-14 82.4 68 61.8
Gohir.A05G318400 Gossypium hirsutum HOM05D008443 ORTHO05D010587 2.0e-14 82.0 76 51.3
CSS0001689 Camellia sinensis var. sinensis HOM05D008443 ORTHO05D010587 2.2e-13 78.6 76 53.9
Duzib268G1406 Durio zibethinus HOM05D008443 ORTHO05D010587 5.0e-13 77.4 77 50.6
Gohir.A03G141200 Gossypium hirsutum HOM05D008443 ORTHO05D010587 2.5e-12 75.1 76 51.3
Gorai.005G184100 Gossypium raimondii HOM05D008443 ORTHO05D010587 2.5e-12 75.1 76 51.3
Gorai.009G343700 Gossypium raimondii HOM05D008443 ORTHO05D010587 2.5e-12 75.1 76 48.7
Gohir.D05G320600 Gossypium hirsutum HOM05D008443 ORTHO05D010587 4.2e-12 74.3 76 51.3
ClCG05G025160 Citrullus lanatus HOM05D008443 ORTHO05D010587 5.5e-12 73.9 72 56.9
Gohir.D02G164100 Gossypium hirsutum HOM05D008443 ORTHO05D010587 7.2e-12 73.6 75 52.0
Lj2g0011197 Lotus japonicus HOM05D008443 ORTHO05D010587 7.9e-11 70.1 76 48.7
CANSAT01G1518 Cannabis sativa HOM05D008443 ORTHO05D010587 1.8e-10 68.9 65 53.8
CiPaw.05G147800 Carya illinoinensis HOM05D008443 ORTHO05D010587 1.8e-10 68.9 65 55.4
TAR629G3213 Trochodendron aralioides HOM05D008443 ORTHO05D010587 1.8e-10 68.9 67 52.2
CsaV3_5G031740 Cucumis sativus L. HOM05D008443 ORTHO05D010587 2.3e-10 68.6 74 50.0
Rhsim12G0048000 Rhododendron simsii HOM05D008443 ORTHO05D010587 2.3e-10 68.6 70 52.9
Aqoxy3G03049 Aquilegia oxysepala HOM05D008443 ORTHO05D010587 3.9e-10 67.8 57 57.9
MD16G1089300 Malus domestica HOM05D008443 ORTHO05D010587 3.9e-10 67.8 48 64.6
Nn3g16936 Nelumbo nucifera HOM05D008443 ORTHO05D010587 3.9e-10 67.8 60 60.0
Prupe.1G256700 Prunus persica HOM05D008443 ORTHO05D010587 5.1e-10 67.4 55 60.0
MELO3C012013.2 Cucumis melo HOM05D008443 ORTHO05D010587 8.8e-10 66.6 72 50.0
MD13G1089100 Malus domestica HOM05D008443 ORTHO05D010587 1.5e-09 65.9 48 64.6
Eucgr.B03356 Eucalyptus grandis HOM05D008443 ORTHO05D010587 2.0e-09 65.5 49 61.2
Lsat_1_v5_gn_3_47940 Lactuca sativa HOM05D008443 ORTHO05D010587 2.5e-09 65.1 64 53.1
MBI15_g19742_MAGBIO Magnolia biondii HOM05D008443 ORTHO05D010587 2.5e-09 65.1 56 55.4
PGR102G0936 Punica granatum HOM05D008443 ORTHO05D010587 3.3e-09 64.7 69 49.3
TWI36G1347 Tripterygium wilfordii HOM05D008443 ORTHO05D010587 5.7e-09 63.9 67 52.2
Sc11g0001310 Simmondsia chinensis HOM05D008443 ORTHO05D010587 1.7e-08 62.4 69 49.3
MSTRG.2385 Avicennia marina HOM05D008443 ORTHO05D010587 1.1e-07 59.7 61 49.2
CDE07G0196 Ceratophyllum demersum HOM05D008443 ORTHO05D010587 1.4e-07 59.3 50 54.0
Haze_07480 Corylus avellana HOM05D008443 ORTHO05D010587 5.3e-07 57.4 55 47.3
AUR62013990 Chenopodium quinoa HOM05D008443 ORTHO05D010587 6.9e-07 57.0 57 49.1
RcHm_v2.0_Chr4g0444191 Rosa chinensis HOM05D008443 ORTHO05D010587 1.2e-06 56.2 53 50.9
Cfa019086 Carpinus fangiana HOM05D008443 ORTHO05D010587 1.5e-06 55.8 61 45.9
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 1.5e-06 55.8 49 51.0
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 1.5e-06 55.8 49 51.0
ATR1149G093 Amborella trichopoda HOM05D008443 ORTHO05D010587 2.0e-06 55.5 52 53.8
FAN17G0561 Fragaria x ananassa HOM05D008443 ORTHO05D010587 2.6e-06 55.1 48 50.0
FAN22G1825 Fragaria x ananassa HOM05D008443 ORTHO05D010587 2.6e-06 55.1 48 50.0
SEGI_04815 Sequoiadendron giganteum HOM05D008443 ORTHO05D010587 2.6e-06 55.1 47 55.3
COL.COLO4_24771 Corchorus olitorius HOM05D008443 ORTHO05D010587 4.5e-06 54.3 65 49.2
Dinv31086 Davidia involucrata HOM05D000086 ORTHO05D000983 5.9e-06 53.9 58 51.7


User provided reference genes

Program Settings