Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 2.0e-213 745.7 448 100.0
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 4.5e-197 691.4 449 91.1
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 7.0e-166 587.8 456 76.5
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 1.6e-165 586.6 456 78.7
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 4.6e-165 585.1 464 73.7
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 2.0e-152 543.1 460 71.7
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 2.0e-152 543.1 460 71.7
Glyma.08G110600 Glycine max HOM05D004237 ORTHO05D005002 3.9e-148 528.9 378 86.0
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 4.9e-143 511.9 455 71.4
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 3.2e-142 509.2 449 75.5
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 5.8e-136 488.4 451 71.2
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 1.9e-134 483.4 450 70.0
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 4.2e-134 482.3 456 70.0
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 5.4e-134 481.9 453 66.7
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 2.3e-132 476.5 453 68.9
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 2.3e-132 476.5 453 70.6
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 3.0e-132 476.1 456 63.6
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 3.9e-132 475.7 454 66.1
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 1.1e-131 474.2 450 68.7
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 1.1e-131 474.2 449 65.9
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 1.5e-131 473.8 457 70.0
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.9e-131 473.4 450 69.1
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 1.8e-129 466.8 454 63.2
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 3.1e-129 466.1 450 66.9
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 3.4e-128 462.6 457 66.5
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 9.9e-128 461.1 457 67.4
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 2.4e-126 456.4 472 58.5
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 3.2e-126 456.1 450 67.6
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 9.3e-126 454.5 456 63.2
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 1.6e-122 443.7 446 62.6
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 2.1e-122 443.4 451 63.2
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 8.1e-122 441.4 449 67.9
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 1.2e-120 437.6 463 65.0
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 3.4e-120 436.0 467 61.5
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 4.5e-120 435.6 451 67.6
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 4.5e-120 435.6 469 61.2
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 3.2e-118 429.5 455 65.7
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 1.6e-117 427.2 452 59.7
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 2.1e-117 426.8 449 65.7
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 2.1e-117 426.8 449 65.7
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 1.8e-116 423.7 455 60.9
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 2.3e-116 423.3 460 65.2
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 2.5e-115 419.9 452 62.8
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 3.3e-115 419.5 449 65.0
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 3.7e-114 416.0 454 58.1
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 6.2e-114 415.2 449 63.9
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 3.1e-113 412.9 448 66.3
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 5.3e-113 412.1 451 61.0
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 1.5e-112 410.6 448 65.8
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 4.5e-112 409.1 451 60.5
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 5.8e-112 408.7 450 59.1
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.7e-111 407.1 449 64.4
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 2.2e-111 406.8 451 56.5
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 2.5e-110 403.3 451 62.5
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 3.5e-109 399.4 434 63.1
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 2.3e-108 396.7 434 65.9
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 3.0e-108 396.4 452 60.4
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 3.9e-108 396.0 452 59.7
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 2.5e-102 376.7 415 59.3
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 1.2e-101 374.4 426 65.3
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 1.8e-100 370.5 432 49.1
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 1.1e-99 367.9 449 60.1
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 7.4e-99 365.2 450 48.2
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 9.7e-99 364.8 253 75.1
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 1.0e-92 344.7 448 47.3
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 3.9e-92 342.8 469 54.4
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 1.3e-90 337.8 454 57.5
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 3.7e-90 336.3 428 51.6
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 4.8e-90 335.9 449 50.6
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 1.5e-86 324.3 451 53.4
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 3.3e-83 313.2 434 55.8
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 1.1e-78 298.1 445 51.5
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 9.4e-78 295.0 465 53.5
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 2.0e-75 287.3 442 43.9
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 4.8e-66 256.1 448 46.7
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 3.3e-62 243.4 467 48.0
Nitab4.5_0000697g0020 Nicotiana tabacum HOM05D004237 ORTHO05D005002 4.7e-61 239.6 368 56.2
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 9.8e-59 231.9 465 50.1
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 4.3e-54 216.5 146 69.9
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 4.3e-54 216.5 146 69.9
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 5.8e-43 179.5 451 36.1
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 1.3e-42 178.3 465 38.7
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 3.5e-40 170.2 272 39.0
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 3.5e-40 170.2 282 38.3
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 3.5e-40 170.2 290 37.9
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 7.8e-40 169.1 283 39.9
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 1.0e-39 168.7 270 40.7
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 3.0e-39 167.2 279 41.2
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 3.9e-39 166.8 286 38.8
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 8.6e-39 165.6 155 52.9
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 1.1e-38 165.2 154 55.8
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.5e-38 164.9 152 53.3
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 1.5e-38 164.9 277 41.5
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 1.9e-38 164.5 165 51.5
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 2.5e-38 164.1 161 49.7
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 3.3e-38 163.7 291 37.1
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 3.3e-38 163.7 292 38.7
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 3.3e-38 163.7 275 38.5
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 3.3e-38 163.7 275 38.5
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 4.3e-38 163.3 149 51.7
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 7.3e-38 162.5 166 51.2
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 7.3e-38 162.5 152 52.6
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 7.3e-38 162.5 278 39.2
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 7.3e-38 162.5 278 39.2
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 9.5e-38 162.2 279 39.4
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 9.5e-38 162.2 273 38.8
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 1.6e-37 161.4 140 53.6
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 1.6e-37 161.4 140 53.6
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 2.1e-37 161.0 271 39.9
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 2.1e-37 161.0 270 38.1
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 2.1e-37 161.0 126 56.3
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 2.1e-37 161.0 216 42.1
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 2.1e-37 161.0 319 37.3
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 2.1e-37 161.0 126 56.3
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 2.8e-37 160.6 137 55.5
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 2.8e-37 160.6 152 53.9
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 4.7e-37 159.8 274 39.1
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 4.7e-37 159.8 126 56.3
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 8.1e-37 159.1 153 50.3
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 1.1e-36 158.7 277 37.2
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 1.1e-36 158.7 145 53.1
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.1e-36 158.7 274 37.6
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 1.1e-36 158.7 274 38.0
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 1.4e-36 158.3 169 47.3
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 1.8e-36 157.9 460 41.5
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 1.8e-36 157.9 283 40.3
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 2.3e-36 157.5 315 35.9
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 3.1e-36 157.1 281 37.4
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 3.1e-36 157.1 187 44.9
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 3.1e-36 157.1 281 38.4
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 4.0e-36 156.8 277 39.0
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 4.0e-36 156.8 292 34.6
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 5.2e-36 156.4 296 36.1
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 5.2e-36 156.4 280 37.5
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 8.9e-36 155.6 161 47.8
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 8.9e-36 155.6 271 37.6
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 2.6e-35 154.1 125 53.6
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 2.6e-35 154.1 125 53.6
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 5.8e-35 152.9 125 54.4
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 7.6e-35 152.5 278 37.8
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 7.6e-35 152.5 291 39.2
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.7e-34 151.4 239 41.0
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 2.2e-34 151.0 123 52.8
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 2.2e-34 151.0 279 36.2
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 3.7e-34 150.2 125 52.0
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 3.7e-34 150.2 278 38.5
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 4.9e-34 149.8 275 38.5
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 8.3e-34 149.1 297 35.7
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 1.4e-33 148.3 281 34.5
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 3.2e-33 147.1 271 36.9
TPR.G11942 Trifolium pratense HOM05D004237 ORTHO05D005002 4.1e-33 146.7 78 91.0
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 1.2e-32 145.2 270 35.6
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 2.1e-32 144.4 280 33.9
unitig_45.g31538 Utricularia gibba HOM05D004237 ORTHO05D005002 6.0e-32 142.9 232 39.2
unitig_578.g16512 Utricularia gibba HOM05D004237 ORTHO05D005002 6.0e-32 142.9 232 39.2
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 6.6e-31 139.4 306 32.7
Lj6P390T29 Lonicera japonica HOM05D004237 ORTHO05D005002 8.4e-26 122.5 140 52.1
SHI01026 Sapria himalayana HOM05D004237 ORTHO05D005002 1.1e-25 122.1 377 46.9
Glyma.15G117800 Glycine max HOM05D004237 ORTHO05D005002 2.0e-11 74.7 74 58.1
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 2.7e-08 64.3 58 53.4
Peaxi162Scf00003g00001 Petunia axillaris HOM05D004237 ORTHO05D005002 3.9e-07 60.5 167 34.1
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 8.7e-07 59.3 55 50.9


User provided reference genes

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