Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G048800 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 8.9e-33 142.9 67 100.0
Phvul.003G066700 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 1.9e-22 108.6 70 78.6
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 8.7e-20 99.8 71 73.2
Ca_08602_v3 Cicer arietinum L. HOM05D003654 ORTHO05D004176 7.4e-19 96.7 73 71.2
Glyma.08G106900 Glycine max HOM05D003654 ORTHO05D004176 9.6e-19 96.3 72 69.4
VMungo0251G2538 Vigna mungo HOM05D003654 ORTHO05D004176 2.2e-15 85.1 50 74.0
Psat5g210480 Pisum sativum HOM05D003654 ORTHO05D004176 4.6e-13 77.4 75 57.3
TPR.G28386 Trifolium pratense HOM05D003654 ORTHO05D004176 3.9e-12 74.3 78 55.1
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 8.7e-12 73.2 58 60.3
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.3e-11 71.2 59 55.9
Lj3g0024349 Lotus japonicus HOM05D003654 ORTHO05D004176 3.3e-11 71.2 74 60.8
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 4.3e-11 70.9 59 55.9
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 5.6e-11 70.5 83 47.0
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 9.6e-11 69.7 41 73.2
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 9.6e-11 69.7 86 47.7
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 1.6e-10 68.9 63 54.0
Lalb_Chr25g0282791 Lupinus albus HOM05D003654 ORTHO05D004176 2.8e-10 68.2 66 53.0
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 6.2e-10 67.0 38 73.7
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 1.1e-09 66.2 63 54.0
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 1.1e-09 66.2 57 57.9
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 1.4e-09 65.9 57 57.9
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 1.4e-09 65.9 57 57.9
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 1.4e-09 65.9 57 57.9
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 1.4e-09 65.9 39 71.8
Sed0005344 Sechium edule HOM05D003654 ORTHO05D004176 1.4e-09 65.9 38 71.1
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 1.8e-09 65.5 56 57.1
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 1.8e-09 65.5 56 57.1
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 1.8e-09 65.5 56 57.1
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 2.4e-09 65.1 82 43.9
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 2.4e-09 65.1 44 61.4
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 3.1e-09 64.7 51 52.9
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 3.1e-09 64.7 43 69.8
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.1e-09 64.7 69 47.8
Lsat_1_v5_gn_4_31200 Lactuca sativa HOM05D003654 ORTHO05D004176 3.1e-09 64.7 64 54.7
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 3.1e-09 64.7 61 49.2
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 4.0e-09 64.3 71 52.1
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 4.0e-09 64.3 56 58.9
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 4.0e-09 64.3 41 63.4
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 4.0e-09 64.3 44 65.9
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 4.0e-09 64.3 40 62.5
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 5.3e-09 63.9 39 69.2
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 5.3e-09 63.9 42 69.0
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 6.9e-09 63.5 71 49.3
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 6.9e-09 63.5 43 65.1
Migut.B01278 Erythranthe guttata HOM05D003654 ORTHO05D004176 6.9e-09 63.5 41 65.9
Lsat_1_v5_gn_1_105600 Lactuca sativa HOM05D003654 ORTHO05D004176 6.9e-09 63.5 72 52.8
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 6.9e-09 63.5 47 61.7
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 9.0e-09 63.2 58 50.0
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 9.0e-09 63.2 44 65.9
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 9.0e-09 63.2 59 54.2
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 9.0e-09 63.2 48 62.5
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 1.2e-08 62.8 73 45.2
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 1.2e-08 62.8 58 55.2
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 1.2e-08 62.8 32 81.2
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 1.2e-08 62.8 38 68.4
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 1.2e-08 62.8 50 56.0
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 1.2e-08 62.8 92 39.1
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 1.2e-08 62.8 40 62.5
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.2e-08 62.8 52 55.8
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 1.2e-08 62.8 43 65.1
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 1.2e-08 62.8 51 56.9
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.5e-08 62.4 34 76.5
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.5e-08 62.4 45 60.0
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.5e-08 62.4 45 60.0
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.5e-08 62.4 34 76.5
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 1.5e-08 62.4 34 76.5
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 2.0e-08 62.0 36 72.2
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 2.0e-08 62.0 40 70.0
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 2.0e-08 62.0 40 70.0
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 2.0e-08 62.0 32 78.1
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 2.6e-08 61.6 36 66.7
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 2.6e-08 61.6 34 73.5
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 2.6e-08 61.6 34 73.5
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 3.4e-08 61.2 34 73.5
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.4e-08 61.2 53 58.5
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 3.4e-08 61.2 59 50.8
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 4.5e-08 60.8 47 59.6
Lalb_Chr25g0282781 Lupinus albus HOM05D003654 ORTHO05D004176 4.5e-08 60.8 34 76.5
Medtr3g032740 Medicago truncatula HOM05D003654 ORTHO05D004176 4.5e-08 60.8 32 78.1
Sed0002974 Sechium edule HOM05D003654 ORTHO05D004176 4.5e-08 60.8 81 45.7
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 4.5e-08 60.8 51 54.9
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 5.8e-08 60.5 57 49.1
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 5.8e-08 60.5 57 49.1
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 5.8e-08 60.5 41 63.4
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 5.8e-08 60.5 33 75.8
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 5.8e-08 60.5 41 58.5
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 7.6e-08 60.1 61 45.9
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 7.6e-08 60.1 61 45.9
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 7.6e-08 60.1 60 48.3
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 7.6e-08 60.1 52 53.8
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.3e-07 59.3 41 61.0
Nitab4.5_0000733g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.3e-07 59.3 37 64.9
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 1.7e-07 58.9 67 44.8
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 1.7e-07 58.9 32 75.0
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 1.7e-07 58.9 47 59.6
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 1.7e-07 58.9 68 45.6
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.7e-07 58.9 64 46.9
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 2.2e-07 58.5 46 54.3
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 2.2e-07 58.5 50 54.0
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 2.2e-07 58.5 39 64.1
Hma1.2p1_0493F.1_g164900 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.2e-07 58.5 53 54.7
Hma1.2p1_0493F.1_g164905 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.2e-07 58.5 53 54.7
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 2.2e-07 58.5 37 64.9
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 2.9e-07 58.2 72 44.4
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 2.9e-07 58.2 75 42.7
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 2.9e-07 58.2 38 63.2
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 2.9e-07 58.2 57 49.1
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 3.8e-07 57.8 41 61.0
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 3.8e-07 57.8 33 72.7
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 3.8e-07 57.8 31 77.4
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 3.8e-07 57.8 57 50.9
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 4.9e-07 57.4 40 65.0
Sed0011402 Sechium edule HOM05D003654 ORTHO05D004176 4.9e-07 57.4 30 80.0
SGA_v2.0_scaffold119G32750 Striga asiatica HOM05D003654 ORTHO05D004176 4.9e-07 57.4 40 62.5
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 6.5e-07 57.0 34 67.6
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 6.5e-07 57.0 32 71.9
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 6.5e-07 57.0 32 71.9
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 6.5e-07 57.0 32 71.9
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 6.5e-07 57.0 41 61.0
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 6.5e-07 57.0 41 61.0
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 6.5e-07 57.0 34 67.6
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 6.5e-07 57.0 57 52.6
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 6.5e-07 57.0 44 59.1
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 6.5e-07 57.0 53 49.1
Cfa010801 Carpinus fangiana HOM05D003654 ORTHO05D004176 8.4e-07 56.6 64 46.9
ECA248G2069 Erigeron canadensis HOM05D003654 ORTHO05D004176 1.4e-06 55.8 74 43.2
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 1.4e-06 55.8 34 64.7
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 1.4e-06 55.8 36 61.1
Cpa.g.c30295 Carica papaya HOM05D003654 ORTHO05D004176 2.5e-06 55.1 30 76.7
Haze_03159 Corylus avellana HOM05D003654 ORTHO05D004176 2.5e-06 55.1 66 42.4
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 2.5e-06 55.1 32 68.8
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 3.2e-06 54.7 33 63.6
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 3.2e-06 54.7 55 50.9
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 4.2e-06 54.3 31 71.0
Os10g0417300 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 4.2e-06 54.3 57 45.6
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 4.2e-06 54.3 33 66.7
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 5.5e-06 53.9 31 71.0
FAN01G0848 Fragaria x ananassa HOM05D021847 ORTHO05D025587 5.5e-06 53.9 28 75.0
FAN03G3154 Fragaria x ananassa HOM05D021847 ORTHO05D025587 5.5e-06 53.9 28 75.0
FAN06G2251 Fragaria x ananassa HOM05D021847 ORTHO05D025587 5.5e-06 53.9 28 75.0
FAN10G1859 Fragaria x ananassa HOM05D021847 ORTHO05D025587 5.5e-06 53.9 28 75.0
Eucgr.A02351 Eucalyptus grandis HOM05D003654 ORTHO05D004176 7.1e-06 53.5 75 40.0
Hma1.2p1_0589F.1_g184810 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 7.1e-06 53.5 43 58.1
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 7.1e-06 53.5 68 41.2
Manes.07G007900 Manihot esculenta HOM05D003654 ORTHO05D004176 9.3e-06 53.1 30 73.3
Nn7g36270 Nelumbo nucifera HOM05D003654 ORTHO05D004176 9.3e-06 53.1 89 43.8
Thecc.01G407700 Theobroma cacao HOM05D003654 ORTHO05D004176 9.3e-06 53.1 30 73.3


User provided reference genes

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