Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 0.0e+00 2117.0 1126 100.0
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 0.0e+00 1671.0 1135 80.0
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 0.0e+00 1448.3 1142 70.7
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 0.0e+00 1396.3 1137 69.7
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 3.6e-267 925.6 1168 51.8
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 7.1e-223 778.5 1210 45.7
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 1.8e-218 763.8 1195 45.3
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 1.7e-216 757.3 1156 46.5
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 2.2e-208 730.3 1153 45.6
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 6.2e-195 685.6 1153 43.5
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 7.2e-151 539.3 1146 37.5
Lalb_Chr12g0205781 Lupinus albus HOM05D005839 ORTHO05D005686 4.5e-145 520.0 924 42.6
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 7.7e-145 519.2 1146 36.9
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 1.5e-132 478.4 1237 33.4
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 1.7e-128 464.9 1171 34.3
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 1.4e-117 428.7 1280 31.9
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 2.9e-115 421.0 789 42.3
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 3.2e-114 417.5 1166 33.5
Glyma.18G003300 Glycine max HOM05D005839 ORTHO05D005686 6.0e-113 413.3 1124 33.3
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 3.4e-100 370.9 1173 33.3
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 5.8e-100 370.2 1148 32.2
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 2.3e-96 358.2 1256 31.1
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 1.5e-95 355.5 1176 31.6
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 2.9e-91 341.3 1152 30.3
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 2.9e-91 341.3 1224 29.9
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 5.4e-90 337.0 1238 30.0
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 7.1e-90 336.7 1122 31.6
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 4.6e-89 334.0 1167 30.9
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 1.9e-87 328.6 1195 29.2
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 7.3e-87 326.6 1238 29.9
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 5.3e-85 320.5 1259 29.2
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 5.8e-84 317.0 1139 30.1
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 7.6e-84 316.6 1333 29.3
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 4.9e-83 313.9 1172 29.0
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 4.9e-83 313.9 1145 30.7
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 8.4e-83 313.2 1138 30.1
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 7.1e-82 310.1 1140 30.4
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 1.2e-81 309.3 1204 29.7
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 2.1e-81 308.5 1147 29.0
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 2.5e-79 301.6 1306 29.2
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 3.3e-79 301.2 1175 28.8
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.3e-78 299.3 1145 29.0
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 2.8e-78 298.1 1160 29.6
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 4.8e-78 297.4 1182 28.7
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 1.8e-77 295.4 1138 29.2
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 4.0e-77 294.3 1157 30.9
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 9.0e-77 293.1 1152 28.8
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 1.4e-74 285.8 1141 29.9
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 2.5e-74 285.0 1144 29.0
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 1.2e-73 282.7 263 60.8
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 6.0e-73 280.4 1173 28.2
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.0e-72 279.6 1166 28.1
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 1.3e-72 279.3 399 45.1
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 3.0e-72 278.1 1145 28.9
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 3.9e-72 277.7 1138 28.9
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.3e-70 272.7 1168 28.3
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 3.7e-70 271.2 1164 28.8
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 9.0e-69 266.5 1126 29.1
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 1.9e-66 258.8 1186 31.1
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 4.2e-66 257.7 598 36.0
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 3.5e-65 254.6 1126 27.4
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 1.0e-64 253.1 1161 27.2
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 1.0e-64 253.1 1151 28.1
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 8.2e-62 243.4 1148 26.1
Glyma.11G253800 Glycine max HOM05D005839 ORTHO05D005686 3.1e-61 241.5 1094 28.5
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 1.1e-58 233.0 299 49.2
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.7e-57 228.4 1140 26.6
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.8e-56 225.7 1143 26.9
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 2.3e-56 225.3 1155 26.9
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 3.0e-56 224.9 225 58.2
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 3.3e-55 221.5 409 42.1
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.7e-54 219.2 1142 26.5
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 2.4e-53 215.3 1135 27.9
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 2.4e-53 215.3 292 49.0
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 5.3e-53 214.2 1123 27.9
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 9.1e-53 213.4 270 48.5
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 2.0e-52 212.2 1157 25.7
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 4.5e-52 211.1 1159 26.7
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 5.9e-52 210.7 1159 26.7
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 7.7e-52 210.3 340 45.0
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 4.2e-50 204.5 279 49.5
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 9.4e-50 203.4 398 39.2
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 2.1e-49 202.2 1173 25.7
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 3.6e-49 201.4 391 38.6
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 5.1e-48 197.6 395 38.0
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 2.0e-44 185.7 131 68.7
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 2.6e-44 185.3 1158 25.7
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 3.8e-43 181.4 714 28.6
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 2.5e-42 178.7 170 59.4
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 5.5e-42 177.6 612 29.7
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 2.1e-41 175.6 1242 25.0
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.0e-39 169.1 234 47.4
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 9.7e-39 166.8 252 40.9
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 1.3e-38 166.4 1138 25.2
arahy.Tifrunner.gnm1.ann1.52QBHW Arachis hypogaea HOM05D005839 ORTHO05D005686 1.7e-38 166.0 153 62.1
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 3.7e-38 164.9 940 26.8
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 2.0e-36 159.1 1036 25.8
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 2.9e-35 155.2 267 43.8
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 2.1e-33 149.1 308 37.3
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 8.3e-30 137.1 272 39.3
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 5.3e-29 134.4 237 38.8
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 7.0e-29 134.0 101 66.3
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 4.5e-28 131.3 197 41.6
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 1.0e-27 130.2 317 33.8
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 9.4e-26 123.6 152 49.3
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 3.6e-25 121.7 1144 24.3
Cpa.g.sc157.15 Carica papaya HOM05D005839 ORTHO05D005686 2.0e-23 115.9 123 52.0
Cpa.g.sc157.18 Carica papaya HOM05D005839 ORTHO05D005686 1.7e-22 112.8 123 51.2
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.1e-21 110.2 215 35.3
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 5.4e-21 107.8 244 37.7
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 5.4e-21 107.8 167 43.1
Lalb_Chr07g0186961 Lupinus albus HOM05D005839 ORTHO05D005686 1.2e-20 106.7 152 46.1
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 4.5e-20 104.8 200 35.5
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 7.7e-20 104.0 182 38.5
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 2.9e-19 102.1 75 62.7
Lalb_Chr12g0205771 Lupinus albus HOM05D005839 ORTHO05D005686 5.0e-19 101.3 64 76.6
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 2.5e-18 99.0 270 33.3
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 1.2e-17 96.7 127 42.5
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 1.0e-16 93.6 164 36.0
arahy.Tifrunner.gnm1.ann1.CIA2YT Arachis hypogaea HOM05D005839 ORTHO05D005686 1.0e-16 93.6 99 49.5
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 1.8e-16 92.8 276 30.1
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 4.0e-16 91.7 129 41.1
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 2.0e-15 89.4 123 41.5
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 4.4e-15 88.2 246 32.1
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 2.2e-14 85.9 296 29.1
arahy.Tifrunner.gnm1.ann1.JXU29S Arachis hypogaea HOM05D005839 ORTHO05D005686 2.8e-14 85.5 230 37.0
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 3.7e-14 85.1 228 32.0
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 1.8e-13 82.8 131 41.2
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 1.8e-13 82.8 226 31.4
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 2.4e-13 82.4 188 34.6
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 3.2e-13 82.0 188 35.1
Nn1g08130 Nelumbo nucifera HOM05D005839 ORTHO05D005686 9.2e-13 80.5 270 28.5
arahy.Tifrunner.gnm1.ann1.TC2NGU Arachis hypogaea HOM05D010837 ORTHO05D007788 1.6e-12 79.7 92 53.3
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 3.5e-12 78.6 328 27.7
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 4.5e-12 78.2 146 34.9
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 1.0e-11 77.0 328 27.4
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 1.7e-11 76.3 134 38.8
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 5.0e-11 74.7 307 27.4
SEGI_24376 Sequoiadendron giganteum HOM05D005839 ORTHO05D005686 1.5e-10 73.2 64 48.4
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 1.9e-10 72.8 472 24.4
PSO063G0130 Papaver somniferum HOM05D037519 ORTHO05D037279 1.9e-10 72.8 122 35.2
QL06p027203 Quercus lobata HOM05D034196 ORTHO05D005686 4.3e-10 71.6 128 33.6
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 5.6e-10 71.2 257 28.0
arahy.Tifrunner.gnm1.ann1.BWA67Y Arachis hypogaea HOM05D001957 ORTHO05D005931 1.4e-08 66.6 69 52.2
arahy.Tifrunner.gnm1.ann1.HUZG22 Arachis hypogaea HOM05D000013 ORTHO05D000011 4.0e-08 65.1 77 57.1
Mapoly0008s0012 Marchantia polymorpha HOM05D005839 ORTHO05D005686 2.6e-07 62.4 31 71.0
CDE05G0606 Ceratophyllum demersum HOM05D062397 ORTHO05D043856 7.5e-07 60.8 203 28.1
Ca_13654_v3 Cicer arietinum L. HOM05D000161 ORTHO05D000111 1.7e-06 59.7 87 41.4
Mapoly0059s0004 Marchantia polymorpha HOM05D005839 ORTHO05D005686 1.7e-06 59.7 62 45.2
SMO153G0001 Selaginella moellendorffii HOM05D005839 ORTHO05D005686 3.7e-06 58.5 68 35.3


User provided reference genes

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