Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 0.0e+00 1117.8 602 100.0
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 1.1e-270 936.4 602 85.2
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 1.3e-268 929.5 616 77.1
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 2.1e-266 922.2 617 76.0
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 2.7e-237 825.5 611 68.1
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 1.7e-236 822.8 612 67.8
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 3.0e-236 822.0 625 67.0
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 2.4e-233 812.4 611 66.8
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 1.1e-227 793.5 610 65.2
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 9.0e-225 783.9 644 68.5
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 9.3e-222 773.9 503 75.7
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 1.3e-220 770.0 682 65.0
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 2.1e-213 746.1 621 60.7
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 2.8e-210 735.7 632 59.5
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 3.7e-210 735.3 632 59.5
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 6.3e-210 734.6 621 61.7
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 1.1e-209 733.8 616 59.7
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 5.3e-209 731.5 615 59.5
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 1.2e-208 730.3 606 60.1
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 2.9e-207 725.7 620 58.9
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 5.0e-207 724.9 614 59.0
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 6.5e-207 724.5 634 59.0
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 6.5e-207 724.5 618 59.1
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 1.1e-206 723.8 617 60.3
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 1.4e-206 723.4 618 59.1
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.5e-206 722.6 619 62.8
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 1.3e-204 716.8 620 59.7
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 1.8e-204 716.5 633 57.8
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 3.9e-204 715.3 620 60.0
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 1.5e-203 713.4 614 58.8
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 2.5e-203 712.6 619 59.3
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 3.3e-203 712.2 621 59.3
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 5.7e-203 711.4 617 57.7
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 9.7e-203 710.7 619 59.0
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 9.7e-203 710.7 617 64.8
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 2.2e-202 709.5 619 58.3
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 1.4e-201 706.8 609 58.1
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 5.0e-199 698.4 620 57.3
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 1.6e-197 693.3 599 57.9
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 1.5e-195 686.8 626 57.2
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 1.5e-195 686.8 620 56.9
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 2.0e-195 686.4 596 58.6
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 2.5e-195 686.0 618 57.6
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 7.4e-195 684.5 615 56.7
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 2.2e-194 682.9 616 58.4
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 1.4e-193 680.2 618 57.6
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 2.4e-193 679.5 615 57.7
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 2.4e-193 679.5 626 59.1
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 6.9e-193 677.9 624 62.2
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 2.0e-192 676.4 627 55.8
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 2.0e-192 676.4 621 57.3
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 1.3e-191 673.7 612 57.0
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 2.2e-191 672.9 613 56.1
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 2.5e-190 669.5 620 56.5
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 3.2e-190 669.1 613 56.6
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 5.5e-190 668.3 601 56.4
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 9.4e-190 667.5 622 55.1
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 1.6e-189 666.8 609 56.3
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 2.1e-189 666.4 616 55.8
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 3.6e-189 665.6 627 55.3
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 4.7e-189 665.2 522 64.2
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 1.0e-188 664.1 625 55.0
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 2.0e-187 659.8 614 55.4
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 2.0e-187 659.8 597 62.8
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 3.3e-187 659.1 612 56.7
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 1.3e-186 657.1 610 56.6
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 8.2e-186 654.4 522 62.6
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 4.1e-185 652.1 618 55.0
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 8.5e-183 644.4 617 53.0
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 1.9e-182 643.3 617 54.5
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 2.5e-182 642.9 627 53.9
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 4.2e-182 642.1 638 53.3
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 9.4e-182 641.0 620 54.8
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 4.7e-181 638.6 632 54.7
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 1.8e-180 636.7 627 53.3
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 2.3e-180 636.3 609 54.0
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 6.7e-180 634.8 610 53.9
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 1.1e-179 634.0 614 53.7
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 1.5e-179 633.6 599 54.9
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 5.7e-179 631.7 618 52.1
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 1.7e-178 630.2 625 51.8
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 8.2e-178 627.9 632 56.6
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 1.8e-177 626.7 620 55.8
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 4.1e-177 625.5 591 54.3
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 4.1e-177 625.5 595 54.1
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 5.3e-177 625.2 626 52.9
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 4.5e-176 622.1 618 51.5
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 5.9e-176 621.7 610 54.1
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 2.9e-175 619.4 639 56.0
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.9e-174 616.7 664 48.6
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 2.5e-174 616.3 610 53.4
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 3.6e-173 612.5 589 60.3
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 1.0e-172 610.9 636 50.5
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 3.0e-172 609.4 594 53.0
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 7.7e-168 594.7 624 50.2
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 1.0e-167 594.3 645 49.8
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 5.0e-167 592.0 618 57.1
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 2.5e-166 589.7 730 46.0
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 3.6e-157 559.3 736 44.0
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 2.2e-154 550.1 625 48.5
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 5.4e-153 545.4 597 48.6
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 1.2e-152 544.3 615 47.2
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 6.8e-148 528.5 594 47.3
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 1.7e-146 523.9 573 47.3
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 1.2e-141 507.7 512 52.7
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 5.4e-137 492.3 644 46.1
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 3.3e-126 456.4 409 57.2
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 6.9e-108 395.6 443 48.1
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 1.0e-103 381.7 446 46.6
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.0e-103 380.2 415 51.1
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 3.7e-101 373.2 383 49.9
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.4e-97 361.3 413 49.9
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.5e-96 356.7 415 49.2
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 6.0e-96 355.9 413 48.9
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 6.3e-93 345.9 324 52.2
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.1e-92 343.6 402 48.8
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 2.0e-91 340.9 336 50.3
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.9e-91 339.3 414 48.1
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 7.7e-83 312.4 417 45.1
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.1e-76 290.0 411 44.0
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.2e-74 284.3 416 42.1
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 4.8e-69 266.5 561 30.3
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 8.5e-66 255.8 258 51.6
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 2.5e-65 254.2 559 29.7
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 9.7e-62 242.3 205 59.0
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 5.0e-58 229.9 433 32.6
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 1.0e-55 222.2 482 30.1
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.7e-53 214.9 237 49.4
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 5.4e-52 209.9 237 50.2
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 2.5e-49 201.1 529 29.3
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 2.6e-46 191.0 163 56.4
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 7.5e-46 189.5 210 51.0
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 2.2e-45 188.0 174 55.2
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 1.7e-42 178.3 434 27.2
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 1.5e-38 165.2 108 73.1
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.6e-35 155.2 135 55.6
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.5e-30 138.7 97 63.9
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 3.7e-29 134.0 94 68.1
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 1.0e-26 125.9 155 47.7
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 5.4e-20 103.6 100 48.0
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 4.6e-19 100.5 55 80.0
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 1.7e-18 98.6 112 46.4
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 2.0e-14 85.1 75 50.7
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 6.0e-11 73.6 45 66.7
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 6.0e-11 73.6 45 66.7
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.3e-10 72.4 48 66.7
Gohir.D12G165066 Gossypium hirsutum HOM05D004724 ORTHO05D005734 3.6e-08 64.3 54 57.4
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 3.1e-07 61.2 107 34.6
Sabra16G0092100 Salix brachista HOM05D000855 ORTHO05D008530 3.1e-07 61.2 360 22.5


User provided reference genes

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