Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 0.0e+00 1166.0 612 100.0
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 9.5e-190 667.5 577 68.6
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 1.5e-163 580.5 593 60.5
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 5.5e-121 439.1 632 47.2
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 6.6e-98 362.5 632 43.0
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 1.2e-91 341.7 603 43.8
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 8.9e-87 325.5 574 42.7
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 1.4e-84 318.2 557 42.9
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 2.0e-83 314.3 725 37.8
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 6.8e-79 299.3 586 39.1
VMungo0720G2920 Vigna mungo HOM05D005042 ORTHO05D006080 4.4e-78 296.6 230 70.4
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 7.1e-76 289.3 524 42.9
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 1.2e-75 288.5 673 38.0
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 1.2e-75 288.5 614 40.4
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 2.8e-72 277.3 593 39.0
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 4.4e-70 270.0 746 35.8
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 9.9e-70 268.9 745 35.3
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 3.8e-69 266.9 705 36.6
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 3.8e-69 266.9 705 36.6
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 1.9e-68 264.6 724 35.9
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 6.0e-67 259.6 722 36.0
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 7.8e-67 259.2 737 34.7
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 9.6e-65 252.3 617 40.2
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 2.4e-63 247.7 647 35.1
arahy.Tifrunner.gnm1.ann1.6TZ00L Arachis hypogaea HOM05D005042 ORTHO05D006080 1.3e-61 241.9 474 40.3
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 4.9e-61 240.0 684 34.9
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 1.7e-58 231.5 127 96.9
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 8.7e-58 229.2 693 32.5
VMungo0771G0001 Vigna mungo HOM05D005042 ORTHO05D006080 1.1e-57 228.8 149 79.2
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 4.3e-57 226.9 636 33.6
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 5.6e-57 226.5 582 34.7
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 1.1e-55 222.2 666 34.5
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 3.1e-55 220.7 624 34.8
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 6.9e-55 219.5 613 34.6
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 1.5e-54 218.4 659 33.1
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 5.8e-54 216.5 442 38.7
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 9.9e-54 215.7 706 31.9
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 1.3e-53 215.3 669 33.5
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 1.7e-53 214.9 581 35.1
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 2.9e-53 214.2 165 70.3
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 4.2e-52 210.3 450 36.9
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 7.9e-51 206.1 653 33.5
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 1.0e-50 205.7 661 34.8
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 3.0e-50 204.1 582 33.5
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 6.7e-50 203.0 775 31.0
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.9e-49 201.4 239 52.7
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 3.3e-49 200.7 684 33.2
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 5.6e-49 199.9 567 34.7
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 7.4e-49 199.5 238 52.1
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 1.3e-48 198.7 666 32.4
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 1.3e-48 198.7 234 54.3
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 1.3e-48 198.7 752 30.7
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 1.6e-48 198.4 729 31.8
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 1.6e-48 198.4 718 31.3
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 2.1e-48 198.0 187 61.5
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 8.1e-48 196.1 666 33.0
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 1.2e-46 192.2 234 53.4
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 2.6e-46 191.0 166 68.1
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 1.7e-45 188.3 270 48.1
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 2.9e-45 187.6 671 32.3
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 3.8e-45 187.2 667 31.5
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 4.9e-45 186.8 618 33.5
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 1.9e-44 184.9 682 31.5
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 3.2e-44 184.1 171 62.6
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 3.2e-44 184.1 663 31.8
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 5.5e-44 183.3 700 30.4
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 1.6e-43 181.8 579 32.0
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 2.7e-43 181.0 582 32.1
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 1.3e-42 178.7 173 61.8
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 1.8e-42 178.3 620 32.3
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 1.8e-42 178.3 222 48.6
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 5.1e-42 176.8 619 31.7
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.1e-41 175.6 633 31.1
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 1.1e-41 175.6 434 35.5
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.5e-41 175.3 618 31.6
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 2.5e-41 174.5 743 29.3
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 6.2e-40 169.9 731 28.5
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 8.2e-40 169.5 561 34.6
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 2.4e-39 167.9 660 30.0
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 1.5e-38 165.2 237 48.1
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.5e-38 165.2 672 30.8
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 2.6e-38 164.5 557 32.3
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 5.8e-38 163.3 108 80.6
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 1.7e-37 161.8 608 31.2
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 2.9e-37 161.0 647 29.8
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 3.8e-37 160.6 166 60.2
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.1e-36 159.1 163 58.3
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.4e-36 158.7 665 31.7
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 3.2e-36 157.5 597 32.2
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 7.1e-36 156.4 597 32.8
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 9.3e-36 156.0 689 29.6
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 1.2e-35 155.6 668 30.4
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 2.1e-35 154.8 601 32.4
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 3.5e-35 154.1 199 48.7
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 1.3e-34 152.1 173 53.2
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 2.3e-34 151.4 601 31.6
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 6.7e-34 149.8 670 30.3
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 6.7e-34 149.8 620 30.6
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 4.3e-33 147.1 562 30.6
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 7.4e-33 146.4 741 28.1
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 9.7e-33 146.0 225 48.4
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 2.2e-32 144.8 694 30.8
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 6.3e-32 143.3 185 49.2
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 3.1e-31 141.0 153 56.2
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 5.3e-31 140.2 606 27.7
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 3.4e-30 137.5 243 40.3
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 3.4e-30 137.5 578 30.8
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 5.9e-30 136.7 700 28.6
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 2.2e-29 134.8 155 53.5
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 3.8e-29 134.0 617 28.7
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 5.0e-29 133.7 411 32.4
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 6.5e-29 133.3 168 48.2
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 3.2e-28 131.0 156 53.2
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 5.5e-28 130.2 617 28.8
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 1.6e-27 128.6 201 44.8
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 2.1e-27 128.3 137 54.0
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 2.5e-25 121.3 224 41.5
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 2.5e-25 121.3 613 28.5
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 3.3e-25 120.9 171 49.7
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 1.1e-23 115.9 476 29.0
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 1.8e-23 115.2 182 43.4
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 2.4e-23 114.8 163 49.7
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 4.1e-23 114.0 200 42.5
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 4.1e-23 114.0 194 42.3
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 6.9e-23 113.2 100 59.0
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 1.3e-21 109.0 168 44.0
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 5.0e-21 107.1 104 56.7
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 1.9e-20 105.1 583 28.8
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 4.2e-20 104.0 137 46.7
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 5.5e-20 103.6 163 44.2
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 9.4e-20 102.8 166 43.4
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 1.6e-19 102.1 67 73.1
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 2.1e-19 101.7 184 41.3
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 2.1e-19 101.7 84 63.1
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 7.9e-19 99.8 84 60.7
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 2.3e-18 98.2 84 59.5
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 8.8e-18 96.3 647 26.3
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 3.3e-17 94.4 129 47.3
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 4.4e-17 94.0 555 25.8
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 4.4e-17 94.0 474 28.5
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 5.7e-17 93.6 183 40.4
TAR371G1032 Trochodendron aralioides HOM05D005042 ORTHO05D006080 2.8e-16 91.3 287 33.1
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 1.1e-15 89.4 103 48.5
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 1.1e-15 89.4 192 37.0
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 2.6e-14 84.7 626 24.9
Manes.14G088800 Manihot esculenta HOM05D005042 ORTHO05D006080 4.7e-11 73.9 70 67.1


User provided reference genes

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