Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G036500 Phaseolus vulgaris HOM05D007340 ORTHO05D008979 4.8e-186 655.2 594 100.0
VMungo1215G3235 Vigna mungo HOM05D007340 ORTHO05D008979 1.0e-127 461.5 594 85.4
Glyma.07G161500 Glycine max HOM05D007340 ORTHO05D008979 1.5e-126 457.6 346 78.6
Ca_06378_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 1.7e-114 417.5 331 63.7
Ca_09841_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 7.3e-110 402.1 330 63.0
Lalb_Chr15g0087231 Lupinus albus HOM05D007340 ORTHO05D008979 1.4e-108 397.9 327 73.7
Lj5g0026289 Lotus japonicus HOM05D007340 ORTHO05D008979 1.3e-103 381.3 347 59.4
arahy.Tifrunner.gnm1.ann1.PE1C4R Arachis hypogaea HOM05D007340 ORTHO05D008979 1.7e-103 380.9 346 69.4
Psat2g009000 Pisum sativum HOM05D007340 ORTHO05D008979 1.9e-97 360.9 331 58.9
Psat7g256640 Pisum sativum HOM05D007340 ORTHO05D008979 1.6e-93 347.8 331 57.1
Medtr5g094770 Medicago truncatula HOM05D007340 ORTHO05D008979 1.3e-74 285.0 250 60.4
Haze_00999 Corylus avellana HOM05D007340 ORTHO05D008979 1.7e-66 258.1 246 54.5
QL06p005970 Quercus lobata HOM05D007340 ORTHO05D008979 2.9e-66 257.3 242 56.6
Cfa015550 Carpinus fangiana HOM05D007340 ORTHO05D008979 8.4e-66 255.8 243 54.7
vmacro17996 Vaccinium macrocarpon HOM05D007340 ORTHO05D008979 4.3e-62 243.4 325 53.8
Prupe.3G113000 Prunus persica HOM05D007340 ORTHO05D008979 2.8e-61 240.7 250 50.8
CiPaw.01G157600 Carya illinoinensis HOM05D007340 ORTHO05D008979 8.1e-61 239.2 243 51.4
Sed0013632 Sechium edule HOM05D007340 ORTHO05D008979 2.4e-60 237.7 239 52.3
ClCG05G001120 Citrullus lanatus HOM05D007340 ORTHO05D008979 3.4e-59 233.8 243 51.9
Duzib151G0496 Durio zibethinus HOM05D007340 ORTHO05D008979 1.7e-58 231.5 240 47.9
Thecc.04G270900 Theobroma cacao HOM05D007340 ORTHO05D008979 3.8e-58 230.3 248 48.4
MD02G1277500 Malus domestica HOM05D007340 ORTHO05D008979 8.4e-58 229.2 233 52.4
Cpa.g.sc16.57 Carica papaya HOM05D007340 ORTHO05D008979 1.4e-57 228.4 250 46.8
Ciclev10007051m.g Citrus clementina HOM05D007340 ORTHO05D008979 1.4e-57 228.4 269 45.4
MELO3C006065.2 Cucumis melo HOM05D007340 ORTHO05D008979 1.9e-57 228.0 243 50.2
TWI73G0639 Tripterygium wilfordii HOM05D007340 ORTHO05D008979 2.4e-57 227.6 246 47.6
CsaV3_3G008450 Cucumis sativus L. HOM05D007340 ORTHO05D008979 1.0e-55 222.2 243 51.0
Atru.chr4.2678 Acer truncatum HOM05D007340 ORTHO05D008979 1.8e-55 221.5 233 48.5
Atru.chr4.2685 Acer truncatum HOM05D007340 ORTHO05D008979 1.8e-55 221.5 233 48.5
Hma1.2p1_0511F.1_g169170 Hydrangea macrophylla HOM05D007340 ORTHO05D008979 1.8e-55 221.5 201 54.2
Hma1.2p1_2025F.1_g311460 Hydrangea macrophylla HOM05D007340 ORTHO05D008979 3.9e-55 220.3 203 53.7
TPR.G28181 Trifolium pratense HOM05D007340 ORTHO05D008979 3.9e-55 220.3 245 51.4
Cc03_g02890 Coffea canephora HOM05D007340 ORTHO05D008979 3.3e-54 217.2 298 41.6
Gohir.D09G059500 Gossypium hirsutum HOM05D001150 ORTHO05D008979 3.3e-54 217.2 250 44.8
Gorai.006G074200 Gossypium raimondii HOM05D001150 ORTHO05D008979 5.6e-54 216.5 250 44.8
Gohir.A09G060400 Gossypium hirsutum HOM05D001150 ORTHO05D008979 1.8e-52 211.5 250 44.4
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 6.9e-52 209.5 266 41.4
Dinv44465 Davidia involucrata HOM05D007340 ORTHO05D008979 9.0e-52 209.1 192 54.7
COL.COLO4_13983 Corchorus olitorius HOM05D007340 ORTHO05D008979 2.0e-51 208.0 222 47.3
Nitab4.5_0003070g0020 Nicotiana tabacum HOM05D007340 ORTHO05D008979 3.4e-51 207.2 263 42.6
TPR.G14140 Trifolium pratense HOM05D007340 ORTHO05D008979 4.5e-51 206.8 189 60.8
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 5.8e-51 206.5 263 42.6
PGSC0003DMG400004352 Solanum tuberosum HOM05D007340 ORTHO05D008979 1.7e-50 204.9 209 49.3
CANSAT78G0497 Cannabis sativa HOM05D007340 ORTHO05D008979 3.8e-50 203.8 224 50.4
CAN.G522.11 Capsicum annuum HOM05D007340 ORTHO05D008979 3.8e-50 203.8 207 49.3
CSS0042730 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 4.9e-50 203.4 203 49.3
TAR633G1855 Trochodendron aralioides HOM05D007340 ORTHO05D008979 2.1e-48 198.0 221 47.5
Sopen01g032100 Solanum pennellii HOM05D007340 ORTHO05D008979 6.0e-48 196.4 207 48.3
Manes.03G186900 Manihot esculenta HOM05D007340 ORTHO05D008979 2.3e-47 194.5 231 47.2
Solyc01g080310.4 Solanum lycopersicum HOM05D007340 ORTHO05D008979 2.3e-47 194.5 207 48.8
TPR.G15743 Trifolium pratense HOM05D007340 ORTHO05D008979 5.1e-47 193.4 263 43.7
Lj4P768T34 Lonicera japonica HOM05D007340 ORTHO05D008979 2.5e-46 191.0 201 46.8
SalBow2G1987 Salvia bowleyana HOM05D007340 ORTHO05D008979 5.7e-46 189.9 297 36.7
Eucgr.C04132 Eucalyptus grandis HOM05D007340 ORTHO05D008979 9.7e-46 189.1 207 50.2
THA.LOC104827130 Tarenaya hassleriana HOM05D007340 ORTHO05D008979 9.7e-46 189.1 199 47.2
Carub.0006s1725 Capsella rubella HOM05D007340 ORTHO05D008979 4.8e-45 186.8 208 45.7
FvH4_4g14110 Fragaria vesca HOM05D007340 ORTHO05D008979 6.3e-45 186.4 198 48.0
RcHm_v2.0_Chr4g0419121 Rosa chinensis HOM05D007340 ORTHO05D008979 6.3e-45 186.4 198 51.0
TPR.G40710 Trifolium pratense HOM05D007340 ORTHO05D008979 1.1e-44 185.7 159 58.5
Eucgr.C03952 Eucalyptus grandis HOM05D007340 ORTHO05D008979 1.4e-44 185.3 207 49.3
FAN12G4271 Fragaria x ananassa HOM05D007340 ORTHO05D008979 6.9e-44 183.0 198 47.0
PGR065G0011 Punica granatum HOM05D007340 ORTHO05D008979 9.0e-44 182.6 206 45.1
EL10Ac8g18451 Beta vulgaris HOM05D007340 ORTHO05D008979 1.2e-43 182.2 210 45.2
SHI00355 Sapria himalayana HOM05D007340 ORTHO05D008979 1.5e-43 181.8 272 40.4
AL6G30300 Arabidopsis lyrata HOM05D007340 ORTHO05D008979 3.4e-43 180.6 240 40.4
Sp6g25440 Schrenkiella parvula HOM05D007340 ORTHO05D008979 2.9e-42 177.6 209 44.0
AUR62010965 Chenopodium quinoa HOM05D007340 ORTHO05D008979 3.8e-42 177.2 189 50.3
Oeu021055.1 Olea europaea HOM05D007340 ORTHO05D008979 5.0e-42 176.8 231 41.1
Sc19g0004680 Simmondsia chinensis HOM05D007340 ORTHO05D008979 1.4e-41 175.3 186 46.8
Rhsim04G0212000 Rhododendron simsii HOM05D001150 ORTHO05D000998 3.2e-41 174.1 194 46.9
AT5G18950 Arabidopsis thaliana HOM05D007340 ORTHO05D008979 1.6e-40 171.8 239 40.2
BcaB08g36633 Brassica carinata HOM05D007340 ORTHO05D008979 2.7e-40 171.0 268 43.7
BcaC04g18636 Brassica carinata HOM05D007340 ORTHO05D008979 3.6e-40 170.6 258 38.4
CARHR194060 Cardamine hirsuta HOM05D007340 ORTHO05D008979 3.6e-40 170.6 240 39.6
GSVIVG01017865001 Vitis vinifera HOM05D007340 ORTHO05D008979 4.6e-40 170.2 163 50.9
A10p20720 Brassica napus HOM05D007340 ORTHO05D008979 1.0e-39 169.1 262 37.8
PSO170G6018 Papaver somniferum HOM05D007340 ORTHO05D008979 1.8e-39 168.3 299 33.8
BraA10t44135Z Brassica rapa HOM05D007340 ORTHO05D008979 3.0e-39 167.5 211 42.7
AUR62021475 Chenopodium quinoa HOM05D007340 ORTHO05D008979 1.1e-38 165.6 191 47.6
Migut.G00250 Erythranthe guttata HOM05D007340 ORTHO05D008979 2.5e-38 164.5 207 43.0
BolC9t58627H Brassica oleracea HOM05D007340 ORTHO05D008979 4.3e-38 163.7 212 43.4
C09p57580 Brassica napus HOM05D007340 ORTHO05D008979 7.4e-38 162.9 212 43.4
Lsat_1_v5_gn_5_93381 Lactuca sativa HOM05D007340 ORTHO05D008979 1.5e-35 155.2 203 44.3
CSS0023925 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 4.5e-35 153.7 206 41.3
FAN17G2541 Fragaria x ananassa HOM05D007340 ORTHO05D008979 1.5e-30 138.7 170 42.4
HanXRQChr17g0539051 Helianthus annuus HOM05D007340 ORTHO05D008979 1.1e-28 132.5 154 41.6
Prupe.1G570100 Prunus persica HOM05D007340 ORTHO05D008979 2.4e-28 131.3 188 42.0
DCAR_030586 Daucus carota HOM05D007340 ORTHO05D008979 6.9e-28 129.8 239 33.9
CSS0037889 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 1.9e-25 121.7 135 45.9
Aqoxy1G00377 Aquilegia oxysepala HOM05D007340 ORTHO05D008979 1.8e-23 115.2 135 43.0
CSS0014652 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 5.2e-23 113.6 175 40.6
HanXRQChr10g0314401 Helianthus annuus HOM05D007340 ORTHO05D008979 2.6e-22 111.3 152 38.2
ECA234G3193 Erigeron canadensis HOM05D005830 ORTHO05D007212 1.8e-20 105.1 120 43.3
CSS0002707 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 4.1e-20 104.0 133 43.6
Gohir.D08G046350 Gossypium hirsutum HOM05D007340 ORTHO05D008979 1.6e-19 102.1 109 43.1
Gorai.004G045600 Gossypium raimondii HOM05D007340 ORTHO05D008979 1.6e-19 102.1 109 43.1
BcaB01g04883 Brassica carinata HOM05D007340 ORTHO05D008979 5.0e-18 97.1 164 35.4
Lsat_1_v5_gn_8_10680 Lactuca sativa HOM05D007340 ORTHO05D008979 8.5e-18 96.3 127 41.7
HPP92_020723 Vanilla planifolia HOM05D007340 ORTHO05D008979 2.1e-16 91.7 314 27.4
BcaB01g05283 Brassica carinata HOM05D007340 ORTHO05D008979 3.6e-16 90.9 163 33.7
CDE04G1227 Ceratophyllum demersum HOM05D007340 ORTHO05D008979 2.3e-15 88.2 184 29.9
CSS0022359 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 4.1e-12 77.4 45 75.6
CSS0037045 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 1.6e-11 75.5 44 75.0
Ciclev10018367m.g Citrus clementina HOM05D007956 ORTHO05D010152 2.9e-10 71.2 262 25.2
CAN.G1181.19 Capsicum annuum HOM05D007291 ORTHO05D009038 2.5e-09 68.2 215 26.0
Cpa.g.sc8.119 Carica papaya HOM05D008810 ORTHO05D010971 1.2e-08 65.9 280 26.8
C03p10720 Brassica napus HOM05D007340 ORTHO05D008979 4.7e-08 63.9 72 41.7
Lsat_1_v5_gn_4_28380 Lactuca sativa HOM05D007340 ORTHO05D008979 6.1e-08 63.5 100 36.0
Lsat_1_v5_gn_2_69440 Lactuca sativa HOM05D007291 ORTHO05D009038 1.0e-07 62.8 285 22.8
FAN14G2986 Fragaria x ananassa HOM05D006819 ORTHO05D008763 1.4e-07 62.4 225 26.7
THA.LOC104817005 Tarenaya hassleriana HOM05D000104 ORTHO05D009920 1.4e-07 62.4 209 25.8
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 2.3e-07 61.6 240 23.3
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 3.0e-07 61.2 222 23.9
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 3.0e-07 61.2 222 23.9
FvH4_6g30030 Fragaria vesca HOM05D006819 ORTHO05D008763 4.0e-07 60.8 223 26.5
Sopen02g024890 Solanum pennellii HOM05D007956 ORTHO05D010152 5.2e-07 60.5 242 26.0
FAN05G3290 Fragaria x ananassa HOM05D006819 ORTHO05D008763 6.8e-07 60.1 219 24.7
Hma1.2p1_0111F.1_g053850 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 6.8e-07 60.1 206 23.8
Hma1.2p1_0111F.1_g053860 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 6.8e-07 60.1 206 23.8
Solyc02g080170.1 Solanum lycopersicum HOM05D007956 ORTHO05D010152 8.8e-07 59.7 242 25.6
vmacro13730 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 8.8e-07 59.7 192 25.5
ATR0582G031 Amborella trichopoda HOM05D007340 ORTHO05D008979 1.2e-06 59.3 111 35.1
Carub.0002s1237 Capsella rubella HOM05D007291 ORTHO05D009038 1.2e-06 59.3 228 24.6
Manes.08G089400 Manihot esculenta HOM05D000104 ORTHO05D009920 1.2e-06 59.3 185 28.6
TAR629G0629 Trochodendron aralioides HOM05D007956 ORTHO05D010152 1.2e-06 59.3 245 20.8
vmacro13800 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 1.2e-06 59.3 197 25.9
MSTRG.10708 Avicennia marina HOM05D007291 ORTHO05D009038 1.5e-06 58.9 188 27.1
A02p13610 Brassica napus HOM05D007291 ORTHO05D009038 1.5e-06 58.9 214 27.1
BraA02t06420Z Brassica rapa HOM05D007291 ORTHO05D009038 1.5e-06 58.9 214 27.1
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 1.5e-06 58.9 190 25.3
vmacro13803 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 1.5e-06 58.9 183 26.2
SEGI_11175 Sequoiadendron giganteum HOM05D007202 ORTHO05D009125 2.0e-06 58.5 178 25.8
FvH4_2g34460 Fragaria vesca HOM05D000001 ORTHO05D000003 2.6e-06 58.2 207 24.6
FAN15G2002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.6e-06 58.2 207 24.2
TAR623G1671 Trochodendron aralioides HOM05D006819 ORTHO05D026583 2.6e-06 58.2 208 24.5
VMungo1215G2034 Vigna mungo HOM05D003210 ORTHO05D000001 2.6e-06 58.2 307 22.5
Duzib106G0003 Durio zibethinus HOM05D005973 ORTHO05D007285 3.4e-06 57.8 179 27.4
Eucgr.D00277 Eucalyptus grandis HOM05D000104 ORTHO05D009920 3.4e-06 57.8 203 26.1
Thhalv10018418m.g Eutrema salsugineum HOM05D007291 ORTHO05D009038 3.4e-06 57.8 230 24.8
Nitab4.5_0008892g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 3.4e-06 57.8 152 28.9
Solyc03g095200.1 Solanum lycopersicum HOM05D000104 ORTHO05D009920 3.4e-06 57.8 250 26.0
vmacro03705 Vaccinium macrocarpon HOM05D007956 ORTHO05D010152 3.4e-06 57.8 186 24.7
EL10Ac2g02881 Beta vulgaris HOM05D005973 ORTHO05D007285 4.4e-06 57.4 212 24.5
PGSC0003DMG401014601 Solanum tuberosum HOM05D007291 ORTHO05D009038 4.4e-06 57.4 236 25.0
BcaNung04156 Brassica carinata HOM05D005973 ORTHO05D007285 5.7e-06 57.0 159 27.7
RcHm_v2.0_Chr2g0136061 Rosa chinensis HOM05D006819 ORTHO05D008763 5.7e-06 57.0 219 24.7
PGSC0003DMG400005248 Solanum tuberosum HOM05D000104 ORTHO05D009920 5.7e-06 57.0 247 25.9
BraA01t01158Z Brassica rapa HOM05D005973 ORTHO05D007285 7.5e-06 56.6 157 28.0
Dinv41259 Davidia involucrata HOM05D000162 ORTHO05D000090 7.5e-06 56.6 176 27.3
PGSC0003DMG400002071 Solanum tuberosum HOM05D007956 ORTHO05D010152 7.5e-06 56.6 213 25.4
arahy.Tifrunner.gnm1.ann1.6HP7HZ Arachis hypogaea HOM05D002890 ORTHO05D009847 9.8e-06 56.2 209 23.0
MELO3C011779.2 Cucumis melo HOM05D008657 ORTHO05D010869 9.8e-06 56.2 108 29.6
RcHm_v2.0_Chr6g0307911 Rosa chinensis HOM05D000001 ORTHO05D000003 9.8e-06 56.2 209 23.9


User provided reference genes

Program Settings