Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G034700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 4.4e-40 167.5 86 100.0
Glyma.01G082600 Glycine max HOM05D006108 ORTHO05D007605 2.9e-36 154.8 86 90.7
TPR.G38355 Trifolium pratense HOM05D006108 ORTHO05D007605 5.7e-32 140.6 84 86.9
Medtr5g055190 Medicago truncatula HOM05D006108 ORTHO05D007605 1.7e-31 139.0 79 88.6
Lj2g0013090 Lotus japonicus HOM05D006108 ORTHO05D007605 1.2e-29 132.9 83 81.9
Psat2g097920 Pisum sativum HOM05D006108 ORTHO05D007605 2.2e-28 128.6 76 85.5
MD13G1043700 Malus domestica HOM05D006108 ORTHO05D007605 9.4e-27 123.2 81 71.6
Lalb_Chr10g0099931 Lupinus albus HOM05D006108 ORTHO05D007605 2.1e-26 122.1 78 80.8
TWI79G0681 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 4.0e-25 117.9 78 74.4
HanXRQChr02g0058721 Helianthus annuus HOM05D006108 ORTHO05D007605 5.2e-25 117.5 85 68.2
Migut.L01077 Erythranthe guttata HOM05D006108 ORTHO05D007605 1.2e-24 116.3 81 72.8
Lsat_1_v5_gn_8_39200 Lactuca sativa HOM05D006108 ORTHO05D007605 2.6e-24 115.2 85 65.9
Prupe.1G308800 Prunus persica HOM05D006108 ORTHO05D007605 2.6e-24 115.2 81 70.4
Sed0000256 Sechium edule HOM05D006108 ORTHO05D007605 2.6e-24 115.2 76 71.1
CiPaw.15G083500 Carya illinoinensis HOM05D006108 ORTHO05D007605 7.5e-24 113.6 80 72.5
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 9.7e-24 113.2 74 74.3
Manes.14G100500 Manihot esculenta HOM05D006108 ORTHO05D007605 3.7e-23 111.3 73 71.2
CsaV3_6G003400 Cucumis sativus L. HOM05D006108 ORTHO05D007605 6.3e-23 110.5 78 67.9
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 6.3e-23 110.5 79 67.1
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.1e-22 109.8 77 70.1
Dinv09807 Davidia involucrata HOM05D006108 ORTHO05D007605 1.8e-22 109.0 78 65.4
Ciclev10033455m.g Citrus clementina HOM05D006108 ORTHO05D007605 4.1e-22 107.8 68 79.4
Manes.06G070100 Manihot esculenta HOM05D006108 ORTHO05D007605 4.1e-22 107.8 78 64.1
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 5.3e-22 107.5 78 62.8
QL01p043861 Quercus lobata HOM05D006108 ORTHO05D007605 7.0e-22 107.1 71 73.2
Potri.008G119200 Populus trichocarpa HOM05D006108 ORTHO05D007605 9.1e-22 106.7 80 65.0
PSO017G5628 Papaver somniferum HOM05D006108 ORTHO05D007605 1.2e-21 106.3 83 62.7
CSS0049683 Camellia sinensis var. sinensis HOM05D006108 ORTHO05D007605 1.6e-21 105.9 75 69.3
DCAR_026728 Daucus carota HOM05D006108 ORTHO05D007605 1.6e-21 105.9 68 73.5
PGR102G2516 Punica granatum HOM05D006108 ORTHO05D007605 1.6e-21 105.9 75 69.3
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.0e-21 105.5 73 71.2
Gohir.A09G177600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.0e-21 105.5 85 63.5
FAN13G1808 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.7e-21 105.1 77 62.3
FAN18G0723 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.7e-21 105.1 77 62.3
FAN18G1336 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.7e-21 105.1 77 62.3
Gohir.D09G173100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.7e-21 105.1 85 63.5
Gorai.006G195000 Gossypium raimondii HOM05D006108 ORTHO05D007605 2.7e-21 105.1 85 63.5
RcHm_v2.0_Chr7g0185241 Rosa chinensis HOM05D006108 ORTHO05D007605 2.7e-21 105.1 77 62.3
Sabra08G0090500 Salix brachista HOM05D006108 ORTHO05D007605 2.7e-21 105.1 82 62.2
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 3.5e-21 104.8 79 62.0
THA.LOC104824033 Tarenaya hassleriana HOM05D006108 ORTHO05D007605 3.5e-21 104.8 75 68.0
CAN.G388.38 Capsicum annuum HOM05D006108 ORTHO05D007605 4.5e-21 104.4 68 72.1
Nitab4.5_0003285g0040 Nicotiana tabacum HOM05D006108 ORTHO05D007605 4.5e-21 104.4 67 71.6
Sp2g15090 Schrenkiella parvula HOM05D006108 ORTHO05D007605 4.5e-21 104.4 77 61.0
Gorai.008G184200 Gossypium raimondii HOM05D006108 ORTHO05D007605 5.9e-21 104.0 85 61.2
MD16G1044500 Malus domestica HOM05D006108 ORTHO05D007605 7.7e-21 103.6 74 66.2
Oeu008040.1 Olea europaea HOM05D006108 ORTHO05D007605 1.0e-20 103.2 68 73.5
Oeu041896.1 Olea europaea HOM05D006108 ORTHO05D007605 1.0e-20 103.2 68 75.0
BcaB07g30252 Brassica carinata HOM05D006108 ORTHO05D007605 1.7e-20 102.4 77 58.4
A06p42440 Brassica napus HOM05D006108 ORTHO05D007605 1.7e-20 102.4 78 60.3
BraA06t27159Z Brassica rapa HOM05D006108 ORTHO05D007605 1.7e-20 102.4 78 60.3
FvH4_5g12320 Fragaria vesca HOM05D006108 ORTHO05D007605 1.7e-20 102.4 77 61.0
FAN08G0393 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.7e-20 102.4 77 61.0
BcaC06g33947 Brassica carinata HOM05D006108 ORTHO05D007605 2.2e-20 102.1 83 57.8
Carub.0005s0368 Capsella rubella HOM05D006108 ORTHO05D007605 2.2e-20 102.1 74 56.8
TWI31G1391 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 2.2e-20 102.1 78 65.4
BcaC03g17291 Brassica carinata HOM05D006108 ORTHO05D007605 2.9e-20 101.7 77 53.2
BolC2t11319H Brassica oleracea HOM05D006108 ORTHO05D007605 2.9e-20 101.7 77 53.2
CARHR146800 Cardamine hirsuta HOM05D006108 ORTHO05D007605 2.9e-20 101.7 82 58.5
Nitab4.5_0001914g0010 Nicotiana tabacum HOM05D006108 ORTHO05D007605 2.9e-20 101.7 67 70.1
Duzib084G1067 Durio zibethinus HOM05D006108 ORTHO05D007605 3.8e-20 101.3 85 57.6
Eucgr.B03028 Eucalyptus grandis HOM05D006108 ORTHO05D007605 3.8e-20 101.3 82 58.5
Thecc.03G033400 Theobroma cacao HOM05D006108 ORTHO05D007605 3.8e-20 101.3 81 59.3
AT3G25855 Arabidopsis thaliana HOM05D006108 ORTHO05D007605 5.0e-20 100.9 77 59.7
BolC7t44019H Brassica oleracea HOM05D006108 ORTHO05D007605 6.5e-20 100.5 83 57.8
Rhsim12G0143800 Rhododendron simsii HOM05D006108 ORTHO05D007605 6.5e-20 100.5 75 64.0
A02p34100 Brassica napus HOM05D006108 ORTHO05D007605 8.5e-20 100.1 80 55.0
C07p34870 Brassica napus HOM05D006108 ORTHO05D007605 1.1e-19 99.8 83 56.6
Lj2g0017619 Lotus japonicus HOM05D006108 ORTHO05D007605 1.5e-19 99.4 85 58.8
Sopen05g012490 Solanum pennellii HOM05D006108 ORTHO05D007605 1.5e-19 99.4 74 63.5
Gohir.A09G047400 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.5e-19 98.6 75 58.7
Gorai.006G061500 Gossypium raimondii HOM05D006108 ORTHO05D007605 2.5e-19 98.6 75 58.7
Psat6g222560 Pisum sativum HOM05D006108 ORTHO05D007605 2.5e-19 98.6 76 61.8
AL5G14490 Arabidopsis lyrata HOM05D006108 ORTHO05D007605 3.2e-19 98.2 77 59.7
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 3.2e-19 98.2 72 61.1
Cc11_g10300 Coffea canephora HOM05D006108 ORTHO05D007605 5.5e-19 97.4 78 62.8
Gohir.D09G048600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 5.5e-19 97.4 75 58.7
Actinidia35084 Actinidia chinensis HOM05D006108 ORTHO05D007605 9.4e-19 96.7 74 62.2
BcaC06g31111 Brassica carinata HOM05D006108 ORTHO05D007605 9.4e-19 96.7 77 55.8
CiPaw.15G129300 Carya illinoinensis HOM05D006108 ORTHO05D007605 9.4e-19 96.7 75 64.0
Ciclev10022919m.g Citrus clementina HOM05D006108 ORTHO05D007605 1.2e-18 96.3 79 59.5
Glyma.09G185400 Glycine max HOM05D006108 ORTHO05D007605 1.2e-18 96.3 86 58.1
Prupe.5G220300 Prunus persica HOM05D006108 ORTHO05D007605 1.2e-18 96.3 81 59.3
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 1.2e-18 96.3 82 57.3
Thhalv10005176m.g Eutrema salsugineum HOM05D006108 ORTHO05D007605 1.6e-18 95.9 76 56.6
FAN12G0874 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.6e-18 95.9 80 63.8
Eucgr.B00718 Eucalyptus grandis HOM05D006108 ORTHO05D007605 2.7e-18 95.1 83 55.4
Gohir.A12G168100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 3.6e-18 94.7 78 61.5
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 6.1e-18 94.0 85 55.3
Glyma.07G090500 Glycine max HOM05D006108 ORTHO05D007605 6.1e-18 94.0 86 57.0
Nn3g17803 Nelumbo nucifera HOM05D006108 ORTHO05D007605 6.1e-18 94.0 76 57.9
Atru.chr9.818 Acer truncatum HOM05D006108 ORTHO05D007605 8.0e-18 93.6 72 63.9
C02p52370 Brassica napus HOM05D006108 ORTHO05D007605 8.0e-18 93.6 70 55.7
MD06G1214900 Malus domestica HOM05D006108 ORTHO05D007605 8.0e-18 93.6 83 56.6
Phvul.004G158700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 8.0e-18 93.6 82 57.3
TPR.G35239 Trifolium pratense HOM05D006108 ORTHO05D007605 1.0e-17 93.2 85 56.5
Gohir.D12G171700 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.8e-17 92.4 78 60.3
CsaV3_1G006560 Cucumis sativus L. HOM05D006108 ORTHO05D007605 3.0e-17 91.7 77 59.7
Manes.05G140027 Manihot esculenta HOM05D006108 ORTHO05D007605 3.0e-17 91.7 73 60.3
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 4.0e-17 91.3 78 57.7
BraA02t08427Z Brassica rapa HOM05D006108 ORTHO05D007605 5.2e-17 90.9 70 54.3
MD14G1225800 Malus domestica HOM05D006108 ORTHO05D007605 5.2e-17 90.9 69 66.7
CDE05G0497 Ceratophyllum demersum HOM05D006108 ORTHO05D007605 6.8e-17 90.5 76 59.2
Sed0021850 Sechium edule HOM05D006108 ORTHO05D007605 6.8e-17 90.5 82 53.7
QL10p025064 Quercus lobata HOM05D006108 ORTHO05D007605 2.0e-16 89.0 68 61.8
Sc14g0007540 Simmondsia chinensis HOM05D006108 ORTHO05D007605 2.0e-16 89.0 80 53.8
Sopen03g038460 Solanum pennellii HOM05D006108 ORTHO05D007605 7.5e-16 87.0 85 51.8
Nn4g23806 Nelumbo nucifera HOM05D006108 ORTHO05D007605 1.3e-15 86.3 68 58.8
Os09g0408550 Oryza sativa ssp. japonica HOM05D006108 ORTHO05D007605 2.8e-15 85.1 68 58.8
arahy.Tifrunner.gnm1.ann1.1V8BDZ Arachis hypogaea HOM05D006108 ORTHO05D007605 4.8e-15 84.3 76 55.3
arahy.Tifrunner.gnm1.ann1.L19XPP Arachis hypogaea HOM05D006108 ORTHO05D007605 4.8e-15 84.3 76 55.3
HPP92_026959 Vanilla planifolia HOM05D006108 ORTHO05D007605 6.3e-15 84.0 73 53.4
PGSC0003DMG402005714 Solanum tuberosum HOM05D006108 ORTHO05D007605 1.8e-14 82.4 84 51.2
Nitab4.5_0001599g0060 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.2e-13 79.7 79 51.9
Nitab4.5_0004412g0100 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.2e-13 79.7 79 51.9
arahy.Tifrunner.gnm1.ann1.384K0G Arachis hypogaea HOM05D006108 ORTHO05D007605 1.6e-13 79.3 53 79.2
Zm00001eb099300 Zea mays HOM05D006108 ORTHO05D007605 1.6e-13 79.3 74 52.7
ECA233G5877 Erigeron canadensis HOM05D006108 ORTHO05D007605 4.5e-13 77.8 61 67.2
Cpa.g.sc1.185 Carica papaya HOM05D006108 ORTHO05D007605 3.8e-12 74.7 55 67.3
Sed0027931 Sechium edule HOM05D006108 ORTHO05D007605 1.5e-11 72.8 50 68.0
ClCG08G005220 Citrullus lanatus HOM05D006108 ORTHO05D007605 2.5e-11 72.0 62 59.7
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 4.0e-09 64.7 46 71.7
PGSC0003DMG400010902 Solanum tuberosum HOM05D006108 ORTHO05D007605 5.2e-09 64.3 39 69.2
MELO3C011555.2 Cucumis melo HOM05D006108 ORTHO05D007605 2.0e-08 62.4 41 68.3
ClCG04G011190 Citrullus lanatus HOM05D006108 ORTHO05D007605 2.6e-08 62.0 50 60.0
Hund05757 Selenicereus undatus HOM05D006108 ORTHO05D007605 4.4e-08 61.2 53 52.8
Peaxi162Scf00015g00844 Petunia axillaris HOM05D006108 ORTHO05D007605 1.7e-07 59.3 62 51.6
FAN04G0077 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.1e-06 56.6 57 54.4
TWI15G1195 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 3.1e-06 55.1 82 39.0
CAN.G438.131 Capsicum annuum HOM05D006108 ORTHO05D007605 4.1e-06 54.7 51 54.9


User provided reference genes

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