Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 4.0e-142 508.1 252 100.0
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 7.8e-138 493.8 252 96.0
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 3.7e-132 474.9 252 92.9
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 2.3e-121 439.1 252 83.7
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 8.6e-121 437.2 252 84.1
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 2.5e-120 435.6 252 83.3
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 1.6e-119 433.0 252 82.9
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 2.4e-115 419.1 252 81.3
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 3.6e-111 405.2 252 79.8
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 6.2e-111 404.4 245 80.0
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 6.0e-106 387.9 253 75.9
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 7.8e-106 387.5 252 75.4
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 2.3e-105 386.0 252 74.6
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 3.3e-104 382.1 252 74.2
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 7.3e-104 380.9 251 74.5
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 7.3e-104 380.9 250 72.0
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 7.3e-104 380.9 252 74.6
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 1.6e-103 379.8 250 73.2
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 1.6e-103 379.8 252 75.0
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 1.1e-102 377.1 252 71.8
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 1.8e-102 376.3 252 72.2
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 1.8e-102 376.3 252 73.4
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 4.0e-102 375.2 252 72.6
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 5.3e-102 374.8 252 72.6
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 6.9e-102 374.4 253 73.1
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 6.9e-102 374.4 251 73.3
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 9.0e-102 374.0 252 73.4
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 1.5e-101 373.2 252 71.0
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 1.5e-101 373.2 253 74.3
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 1.5e-101 373.2 252 73.4
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 5.8e-101 371.3 245 74.3
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 5.8e-101 371.3 252 72.6
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 7.6e-101 370.9 250 71.2
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 9.9e-101 370.5 252 71.0
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 1.7e-100 369.8 252 73.4
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 2.2e-100 369.4 252 71.8
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 4.9e-100 368.2 253 71.5
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 8.4e-100 367.5 246 74.4
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 8.4e-100 367.5 246 74.4
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 1.4e-99 366.7 252 71.8
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 4.2e-99 365.2 246 74.0
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 4.2e-99 365.2 252 69.0
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 4.2e-99 365.2 252 71.0
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 5.4e-99 364.8 253 72.7
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 7.1e-99 364.4 252 69.4
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 7.1e-99 364.4 252 69.8
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 7.1e-99 364.4 247 72.1
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 1.6e-98 363.2 243 71.2
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 2.7e-98 362.5 252 70.2
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 3.5e-98 362.1 250 68.4
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 4.6e-98 361.7 252 71.4
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 4.6e-98 361.7 252 71.4
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 4.6e-98 361.7 252 70.6
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 4.6e-98 361.7 252 69.0
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.0e-97 360.5 263 67.7
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 1.0e-97 360.5 251 68.5
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 1.0e-97 360.5 252 68.3
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 2.3e-97 359.4 244 73.8
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 2.3e-97 359.4 252 68.3
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 3.0e-97 359.0 252 67.9
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 3.9e-97 358.6 252 68.7
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 5.1e-97 358.2 252 70.6
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 6.7e-97 357.8 252 70.6
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 8.7e-97 357.5 252 70.6
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 8.7e-97 357.5 252 67.5
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 1.1e-96 357.1 241 69.7
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 1.1e-96 357.1 252 71.8
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.1e-96 357.1 252 70.6
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 1.5e-96 356.7 252 71.0
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 1.5e-96 356.7 252 71.0
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 1.9e-96 356.3 253 70.8
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 3.3e-96 355.5 250 68.4
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 4.3e-96 355.1 252 67.1
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 4.3e-96 355.1 250 67.6
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 7.4e-96 354.4 252 69.8
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 3.7e-95 352.1 252 67.5
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 1.8e-94 349.7 252 67.5
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 2.4e-94 349.4 255 66.3
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 2.4e-94 349.4 255 67.5
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 3.1e-94 349.0 255 69.0
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 5.3e-94 348.2 253 66.8
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 6.9e-94 347.8 252 66.7
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 6.9e-94 347.8 252 66.7
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 9.0e-94 347.4 252 65.9
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.2e-93 347.1 252 66.7
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 1.5e-93 346.7 252 66.3
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 1.5e-93 346.7 245 68.6
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 1.5e-93 346.7 254 66.9
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 2.0e-93 346.3 252 67.1
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 2.0e-93 346.3 245 68.6
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 2.6e-93 345.9 252 66.7
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 3.4e-93 345.5 252 66.3
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 3.4e-93 345.5 245 70.6
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 5.8e-93 344.7 252 66.7
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 5.8e-93 344.7 252 66.7
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 7.6e-93 344.4 242 69.0
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 7.6e-93 344.4 246 69.5
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 9.9e-93 344.0 252 65.9
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 9.9e-93 344.0 255 65.1
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 1.3e-92 343.6 252 65.9
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 2.9e-92 342.4 252 66.7
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 3.8e-92 342.0 245 67.8
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 6.4e-92 341.3 243 68.3
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 8.4e-92 340.9 274 62.4
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 8.4e-92 340.9 274 62.4
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.4e-91 340.1 252 63.9
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.4e-91 340.1 243 68.3
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 2.5e-91 339.3 252 66.7
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 5.5e-91 338.2 245 67.3
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 5.5e-91 338.2 245 67.3
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 2.7e-90 335.9 245 66.9
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 3.3e-88 328.9 256 66.0
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 9.6e-88 327.4 288 59.4
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 6.2e-87 324.7 250 64.0
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 8.2e-87 324.3 227 70.0
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 4.5e-85 318.5 241 63.5
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 5.8e-85 318.2 246 64.6
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 6.5e-84 314.7 248 60.1
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 8.4e-84 314.3 291 56.0
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 3.2e-83 312.4 186 79.6
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 6.0e-82 308.1 236 65.3
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.0e-81 307.4 252 60.7
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 1.3e-81 307.0 203 71.4
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 5.7e-80 301.6 249 60.2
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 1.8e-78 296.6 252 59.1
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 6.9e-78 294.7 175 78.3
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 2.6e-77 292.7 186 74.2
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 1.1e-75 287.3 246 62.2
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 1.4e-75 287.0 153 90.2
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 8.8e-73 277.7 253 56.9
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 2.5e-72 276.2 252 57.5
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 1.7e-63 246.9 188 64.9
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.7e-63 246.9 147 78.9
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.7e-63 246.9 147 78.9
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.6e-61 239.6 182 67.0
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 7.7e-61 238.0 201 54.7
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 1.2e-50 204.1 176 54.5
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 6.8e-49 198.4 175 57.1
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 2.8e-47 193.0 183 56.3
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 5.0e-44 182.2 193 51.8
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 5.0e-44 182.2 193 51.8
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 1.0e-41 174.5 110 76.4
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 3.7e-39 166.0 152 54.6
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 4.5e-37 159.1 196 42.3
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 9.5e-35 151.4 88 77.3
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 4.7e-26 122.5 85 69.4
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 6.1e-26 122.1 174 37.4
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 3.1e-25 119.8 63 84.1
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 4.0e-25 119.4 73 74.0
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 7.0e-22 108.6 168 35.7
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 4.6e-21 105.9 75 69.3
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 7.8e-21 105.1 99 53.5
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 7.8e-21 105.1 99 53.5
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 1.5e-19 100.9 108 52.8
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 7.8e-13 78.6 83 53.0
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 7.8e-13 78.6 94 48.9
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 1.0e-12 78.2 52 71.2
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 3.6e-10 69.7 54 70.4
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 3.6e-10 69.7 182 30.2
arahy.Tifrunner.gnm1.ann1.A5SBZK Arachis hypogaea HOM05D004292 ORTHO05D005206 8.9e-09 65.1 65 56.9
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 1.2e-08 64.7 47 68.1
Os09g0411500 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 2.6e-08 63.5 60 51.7
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 1.3e-07 61.2 167 29.9


User provided reference genes

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