Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 2.4e-249 865.1 469 100.0
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 3.1e-225 785.0 473 90.1
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 1.8e-220 769.2 470 88.7
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 1.4e-180 636.7 475 77.9
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 5.6e-158 561.6 407 79.1
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 2.2e-154 549.7 483 64.4
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 5.7e-142 508.4 487 60.2
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 4.2e-137 492.3 499 56.5
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 4.2e-137 492.3 507 57.2
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 4.2e-129 465.7 482 56.8
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 2.2e-125 453.4 412 60.9
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 2.2e-125 453.4 412 60.9
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 8.2e-125 451.4 492 55.7
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 3.5e-123 446.0 516 53.7
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 4.5e-123 445.7 486 52.7
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 8.5e-122 441.4 518 52.9
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 8.5e-122 441.4 503 50.7
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 4.2e-121 439.1 488 52.3
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 4.2e-121 439.1 411 59.9
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 3.6e-120 436.0 506 50.6
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 1.0e-119 434.5 488 51.6
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.0e-119 434.5 487 53.0
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 2.3e-119 433.3 488 51.4
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 2.6e-118 429.9 505 48.9
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 2.8e-117 426.4 490 51.6
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 1.4e-116 424.1 485 50.1
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 1.4e-116 424.1 361 70.4
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 2.4e-116 423.3 527 50.3
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 4.1e-116 422.5 480 50.6
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 2.0e-115 420.2 528 49.2
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 2.7e-115 419.9 496 51.8
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 3.5e-115 419.5 493 52.5
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 5.9e-115 418.7 495 55.2
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 6.5e-114 415.2 475 56.8
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 1.1e-113 414.5 487 48.7
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 2.5e-113 413.3 486 50.6
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 7.2e-113 411.8 489 48.7
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 2.1e-112 410.2 489 48.3
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 8.0e-112 408.3 477 49.9
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 4.0e-111 406.0 494 52.2
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.6e-110 403.3 482 49.6
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.6e-110 403.3 482 49.8
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 5.7e-110 402.1 482 49.4
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 5.7e-110 402.1 503 53.5
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 2.8e-109 399.8 472 48.9
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 3.7e-109 399.4 503 47.3
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 4.8e-109 399.1 487 46.8
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 4.8e-109 399.1 539 47.5
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 6.3e-109 398.7 478 49.4
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 1.4e-108 397.5 512 49.0
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 1.4e-108 397.5 481 48.0
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 4.1e-108 396.0 482 49.2
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 5.4e-108 395.6 511 48.3
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 1.6e-107 394.0 473 48.0
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 1.6e-107 394.0 473 48.0
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 4.5e-107 392.5 482 47.7
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 7.7e-107 391.7 482 47.7
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 6.6e-106 388.7 495 47.7
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 1.1e-105 387.9 479 46.6
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 4.2e-105 386.0 473 47.1
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 7.2e-105 385.2 483 49.3
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 3.6e-104 382.9 524 46.4
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 3.6e-104 382.9 524 46.4
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 3.6e-104 382.9 488 47.7
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 4.7e-104 382.5 468 47.2
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 8.0e-104 381.7 503 47.3
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 8.0e-104 381.7 476 47.3
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 8.9e-103 378.3 497 47.7
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 1.5e-102 377.5 506 46.8
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 2.0e-102 377.1 491 53.6
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 1.3e-101 374.4 486 47.9
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 1.7e-101 374.0 490 46.3
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 3.7e-101 372.9 494 46.4
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 3.7e-101 372.9 508 46.7
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 4.9e-101 372.5 510 47.6
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 4.9e-101 372.5 508 46.9
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 6.3e-101 372.1 478 46.7
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 6.3e-101 372.1 477 47.2
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 1.8e-100 370.5 461 49.5
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 4.1e-100 369.4 511 47.2
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 4.1e-100 369.4 499 45.9
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 9.2e-100 368.2 508 46.5
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 1.2e-99 367.9 475 48.6
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 1.2e-99 367.9 489 51.7
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 5.6e-97 359.0 468 47.0
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 2.1e-96 357.1 496 47.2
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 1.8e-95 354.0 519 43.9
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 1.8e-95 354.0 529 44.2
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 2.3e-95 353.6 487 45.8
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 8.9e-95 351.7 503 45.5
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 8.9e-95 351.7 534 42.9
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 3.4e-94 349.7 521 44.5
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 6.0e-91 339.0 351 53.8
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 3.0e-90 336.7 417 47.7
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 6.6e-90 335.5 385 51.2
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 1.9e-89 334.0 499 42.7
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 1.1e-87 328.2 477 45.1
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 3.4e-86 323.2 483 42.9
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 3.4e-86 323.2 499 43.1
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 2.2e-85 320.5 475 42.9
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 4.9e-85 319.3 477 44.2
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 2.3e-82 310.5 474 43.5
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 3.3e-81 306.6 476 43.1
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 7.3e-81 305.4 551 38.1
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 8.1e-80 302.0 469 40.5
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 1.2e-78 298.1 469 41.8
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 7.1e-76 288.9 474 40.1
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 7.1e-76 288.9 446 42.8
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 1.1e-71 275.0 423 45.4
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 8.9e-71 271.9 472 38.3
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 4.4e-70 269.6 483 40.6
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 1.7e-69 267.7 404 43.1
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 4.2e-68 263.1 334 46.4
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 6.0e-67 259.2 496 40.1
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 2.4e-60 237.3 478 35.4
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 1.2e-59 235.0 487 37.2
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 2.1e-59 234.2 490 34.1
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 5.6e-57 226.1 423 36.2
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 2.1e-56 224.2 379 39.1
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 2.1e-56 224.2 445 36.9
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 1.4e-55 221.5 497 34.2
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 1.2e-51 208.4 731 29.1
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 1.4e-44 184.9 210 53.8
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 1.3e-40 171.8 305 40.0
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 2.1e-40 171.0 201 51.2
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 3.7e-40 170.2 222 48.6
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 1.2e-35 155.2 208 46.2
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 1.6e-35 154.8 206 48.1
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 2.1e-35 154.5 661 28.1
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 6.7e-34 149.4 425 31.1
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 3.3e-33 147.1 395 32.2
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 6.5e-29 132.9 205 45.9
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 4.6e-27 126.7 567 26.6
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 3.9e-26 123.6 218 38.5
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 6.7e-26 122.9 210 40.0
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 7.4e-25 119.4 587 27.3
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 9.1e-23 112.5 201 37.8
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 4.5e-22 110.2 202 41.1
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 8.5e-21 105.9 139 46.0
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.2e-19 102.1 231 35.1
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 3.6e-19 100.5 396 29.8
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 7.9e-19 99.4 110 49.1
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 1.0e-18 99.0 80 60.0
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 3.9e-18 97.1 180 34.4
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 1.1e-17 95.5 76 57.9
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 5.7e-17 93.2 211 30.8
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 2.6e-14 84.3 562 26.0
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 2.6e-14 84.3 156 41.7
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 5.9e-14 83.2 142 35.9
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 7.7e-14 82.8 175 37.1
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 6.5e-13 79.7 156 34.6
COL.COLO4_35853 Corchorus olitorius HOM05D004572 ORTHO05D005425 5.2e-10 70.1 95 44.2
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 1.1e-09 68.9 273 24.2
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 3.1e-07 60.8 113 40.7
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 9.1e-07 59.3 75 42.7
Migut.B01491 Erythranthe guttata HOM05D003624 ORTHO05D004188 9.1e-07 59.3 97 37.1
Cpa.g.sc80.54 Carica papaya HOM05D003624 ORTHO05D004188 1.2e-06 58.9 99 36.4
PSO339G0082 Papaver somniferum HOM05D003624 ORTHO05D004188 1.2e-06 58.9 99 35.4
PSO384G3632 Papaver somniferum HOM05D003624 ORTHO05D004188 1.2e-06 58.9 99 35.4
Pp3c24_1610 Physcomitrium patens HOM05D003624 ORTHO05D004188 2.0e-06 58.2 98 36.7
Nn3g21232 Nelumbo nucifera HOM05D003624 ORTHO05D004188 2.7e-06 57.8 97 36.1
A05p17470 Brassica napus HOM05D003624 ORTHO05D004188 3.5e-06 57.4 98 35.7
C06p16060 Brassica napus HOM05D003624 ORTHO05D004188 3.5e-06 57.4 98 34.7
BraA05t20642Z Brassica rapa HOM05D003624 ORTHO05D004188 3.5e-06 57.4 98 35.7
ClCG05G013440 Citrullus lanatus HOM05D003624 ORTHO05D004188 3.5e-06 57.4 98 34.7
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 3.5e-06 57.4 111 38.7
MELO3C014877.2 Cucumis melo HOM05D003624 ORTHO05D004188 3.5e-06 57.4 98 34.7
Nn6g34375 Nelumbo nucifera HOM05D003624 ORTHO05D004188 3.5e-06 57.4 98 34.7
ClCG01G013570 Citrullus lanatus HOM05D003624 ORTHO05D004188 4.5e-06 57.0 98 34.7
Cc04_g09670 Coffea canephora HOM05D003624 ORTHO05D004188 4.5e-06 57.0 182 27.5
CsaV3_3G027090 Cucumis sativus L. HOM05D003624 ORTHO05D004188 5.9e-06 56.6 98 34.7
Sabra05G0101700 Salix brachista HOM05D004572 ORTHO05D005425 5.9e-06 56.6 41 58.5
BcaC08g44198 Brassica carinata HOM05D003624 ORTHO05D004188 7.7e-06 56.2 98 33.7
BolC6t36805H Brassica oleracea HOM05D003624 ORTHO05D004188 7.7e-06 56.2 98 33.7
Mapoly0087s0013 Marchantia polymorpha HOM05D003624 ORTHO05D004188 7.7e-06 56.2 98 35.7


User provided reference genes

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