Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 2.7e-91 338.6 160 100.0
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 6.6e-74 280.8 145 89.7
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 3.1e-63 245.4 136 83.1
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 3.1e-63 245.4 136 83.1
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 2.0e-62 242.7 149 79.9
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 7.0e-60 234.2 147 73.5
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 7.0e-60 234.2 147 73.5
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 4.6e-59 231.5 147 73.5
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 1.2e-54 216.9 148 72.3
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 7.5e-54 214.2 132 72.7
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 2.2e-53 212.6 144 66.0
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 4.9e-53 211.5 133 72.2
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 8.3e-53 210.7 131 75.6
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 8.3e-53 210.7 150 70.0
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 1.1e-52 210.3 144 72.9
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 1.1e-52 210.3 138 68.1
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 1.9e-52 209.5 133 73.7
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 1.2e-51 206.8 144 66.7
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 2.7e-51 205.7 145 70.3
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 6.0e-51 204.5 146 67.8
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.3e-50 203.4 142 64.8
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 1.7e-50 203.0 134 73.9
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 2.3e-50 202.6 131 68.7
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 2.3e-50 202.6 134 67.9
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 3.0e-50 202.2 137 66.4
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 3.9e-50 201.8 138 66.7
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 3.9e-50 201.8 144 67.4
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 5.1e-50 201.4 131 69.5
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.1e-50 201.4 138 66.7
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 8.6e-50 200.7 131 69.5
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 8.6e-50 200.7 135 69.6
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 8.6e-50 200.7 138 65.9
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 1.5e-49 199.9 133 68.4
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 1.9e-49 199.5 133 65.4
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 2.5e-49 199.1 131 71.0
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 2.5e-49 199.1 129 69.8
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 4.3e-49 198.4 131 68.7
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 4.3e-49 198.4 133 65.4
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 7.3e-49 197.6 136 68.4
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 1.2e-48 196.8 130 70.0
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 1.2e-48 196.8 144 63.9
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 2.1e-48 196.1 128 72.7
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 2.1e-48 196.1 133 65.4
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 2.8e-48 195.7 143 65.7
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 4.7e-48 194.9 134 70.1
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 6.2e-48 194.5 131 68.7
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 8.1e-48 194.1 131 67.2
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 8.1e-48 194.1 144 63.9
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 1.1e-47 193.7 135 68.1
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 1.8e-47 193.0 138 66.7
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 1.8e-47 193.0 143 64.3
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 1.8e-47 193.0 136 65.4
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 4.0e-47 191.8 131 71.0
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 4.0e-47 191.8 140 65.0
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 4.0e-47 191.8 131 67.2
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 6.8e-47 191.0 137 65.0
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 1.2e-46 190.3 139 66.2
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 1.2e-46 190.3 131 69.5
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 1.2e-46 190.3 132 65.2
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.5e-46 189.9 137 65.7
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.5e-46 189.9 137 65.7
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 2.6e-46 189.1 141 60.3
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 3.4e-46 188.7 138 65.9
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 3.4e-46 188.7 133 67.7
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 4.4e-46 188.3 131 65.6
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 4.4e-46 188.3 134 67.9
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 5.8e-46 188.0 133 60.9
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 7.6e-46 187.6 132 60.6
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 1.3e-45 186.8 138 65.2
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 1.7e-45 186.4 129 65.1
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 1.7e-45 186.4 138 65.2
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 1.7e-45 186.4 135 63.7
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 2.2e-45 186.0 129 65.1
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 2.2e-45 186.0 131 68.7
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 2.2e-45 186.0 135 64.4
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 2.9e-45 185.7 131 67.2
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.9e-45 185.7 132 61.4
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.9e-45 185.7 132 61.4
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 2.9e-45 185.7 134 66.4
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 2.9e-45 185.7 134 65.7
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 3.8e-45 185.3 131 64.9
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 4.9e-45 184.9 134 62.7
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 1.1e-44 183.7 141 63.1
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.9e-44 183.0 133 66.9
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.4e-44 182.6 132 59.1
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 2.4e-44 182.6 144 61.1
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 3.2e-44 182.2 129 65.1
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 4.2e-44 181.8 131 64.9
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 5.4e-44 181.4 137 61.3
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 5.4e-44 181.4 132 65.2
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 7.1e-44 181.0 131 64.9
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 1.6e-43 179.9 136 58.8
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.6e-43 179.9 131 63.4
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 1.6e-43 179.9 130 63.8
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 1.6e-43 179.9 130 63.8
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 1.6e-43 179.9 130 63.8
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 2.7e-43 179.1 142 55.6
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 2.7e-43 179.1 133 65.4
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 3.5e-43 178.7 182 52.2
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 3.5e-43 178.7 131 64.1
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 4.6e-43 178.3 131 61.8
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.6e-43 178.3 131 61.8
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 1.0e-42 177.2 131 64.1
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 1.0e-42 177.2 130 62.3
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.7e-42 176.4 136 59.6
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 8.7e-42 174.1 137 62.0
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 1.9e-41 172.9 132 62.1
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 1.9e-41 172.9 132 62.9
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 2.5e-41 172.6 144 54.9
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 2.5e-41 172.6 144 54.9
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 5.6e-41 171.4 134 59.0
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 9.6e-41 170.6 133 56.4
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 9.6e-41 170.6 131 59.5
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 1.2e-40 170.2 135 57.0
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.6e-40 169.9 131 59.5
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 2.8e-40 169.1 131 59.5
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 6.2e-40 167.9 135 57.0
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 1.1e-39 167.2 137 62.0
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 1.1e-39 167.2 129 58.9
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.1e-39 167.2 129 58.9
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 4.0e-39 165.2 146 56.8
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 9.0e-39 164.1 150 54.7
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.2e-38 163.7 134 58.2
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 1.5e-38 163.3 131 58.8
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 2.0e-38 162.9 133 55.6
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 3.4e-38 162.2 126 61.1
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 4.4e-38 161.8 134 58.2
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 9.9e-38 160.6 136 56.6
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 9.9e-38 160.6 133 60.9
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 1.4e-36 156.8 134 56.7
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 1.9e-36 156.4 133 54.1
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 2.4e-36 156.0 131 60.3
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 9.3e-36 154.1 119 65.5
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 1.2e-35 153.7 132 50.8
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 2.1e-35 152.9 140 52.9
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 2.1e-35 152.9 133 52.6
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 1.0e-34 150.6 135 52.6
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.0e-34 149.1 192 41.1
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 3.9e-34 148.7 134 51.5
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 5.1e-34 148.3 115 62.6
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 1.1e-33 147.1 132 50.0
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 1.5e-33 146.7 128 54.7
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 4.3e-33 145.2 133 57.1
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 2.8e-32 142.5 129 56.6
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 6.2e-32 141.4 153 47.7
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 9.0e-31 137.5 93 65.6
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 7.6e-30 134.4 133 47.4
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 2.9e-29 132.5 126 52.4
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 2.4e-28 129.4 133 48.9
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.4e-28 129.4 131 50.4
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 1.8e-26 123.2 131 48.1
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 3.9e-26 122.1 92 59.8
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 1.3e-24 117.1 134 50.0
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 6.9e-23 111.3 133 42.9
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 2.0e-22 109.8 133 45.1
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 7.9e-19 97.8 112 49.1
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 1.1e-17 94.0 63 71.4
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 1.9e-17 93.2 78 62.8
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 3.3e-17 92.4 123 37.4
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.1e-15 87.4 65 66.2
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 3.1e-15 85.9 57 70.2
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 5.3e-15 85.1 67 55.2
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 7.6e-14 81.3 69 60.9
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 4.2e-12 75.5 103 42.7
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 1.3e-10 70.5 49 57.1
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 1.8e-10 70.1 38 65.8
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 7.4e-09 64.7 47 57.4
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 3.7e-08 62.4 75 50.7
FvH4_6g51211 Fragaria vesca HOM05D004290 ORTHO05D005025 1.5e-06 57.0 38 65.8


User provided reference genes

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