Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 8.1e-208 726.9 374 100.0
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 5.3e-191 671.0 378 92.3
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 3.4e-190 668.3 378 92.1
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 3.0e-186 655.2 374 91.7
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 5.0e-173 611.3 364 87.1
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 4.2e-172 608.2 364 86.3
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 6.1e-171 604.4 405 80.0
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 3.0e-170 602.1 363 86.8
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 8.8e-170 600.5 350 87.1
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 2.5e-156 555.8 350 81.4
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 2.5e-156 555.8 344 82.0
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 1.2e-155 553.5 342 81.0
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 2.1e-155 552.7 362 78.7
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 6.1e-155 551.2 350 79.4
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 1.4e-154 550.1 357 78.7
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 5.2e-154 548.1 350 79.7
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 3.3e-153 545.4 344 80.5
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 3.3e-153 545.4 350 79.1
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 3.3e-153 545.4 340 80.6
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 1.3e-152 543.5 339 82.0
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 2.2e-152 542.7 335 81.2
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 4.8e-152 541.6 338 80.8
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 1.1e-151 540.4 340 80.6
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 1.1e-151 540.4 340 80.6
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 1.1e-151 540.4 360 78.6
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 1.8e-151 539.7 374 74.6
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 1.8e-151 539.7 338 82.5
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 4.1e-151 538.5 352 79.0
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 7.0e-151 537.7 335 82.1
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 9.1e-151 537.3 351 78.1
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 1.2e-150 537.0 336 79.8
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 2.0e-150 536.2 351 78.6
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 2.0e-150 536.2 344 79.9
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 2.9e-149 532.3 352 77.6
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 3.8e-149 531.9 330 82.4
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 3.8e-149 531.9 335 80.9
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 6.5e-149 531.2 348 78.2
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 8.5e-149 530.8 360 78.6
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 1.1e-148 530.4 365 74.2
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 1.5e-148 530.0 351 78.3
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 1.9e-148 529.6 335 80.6
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 1.9e-148 529.6 313 84.3
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 3.2e-148 528.9 345 78.8
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 5.5e-148 528.1 374 73.0
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 7.2e-148 527.7 337 79.8
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 6.1e-147 524.6 403 69.2
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 1.4e-146 523.5 336 79.8
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 3.0e-146 522.3 347 76.7
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 4.0e-146 521.9 353 76.8
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 4.0e-146 521.9 384 71.1
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 5.2e-146 521.5 350 76.9
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 8.8e-146 520.8 329 81.2
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 1.2e-145 520.4 350 76.9
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 1.2e-145 520.4 353 76.8
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 1.5e-145 520.0 330 79.1
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 2.0e-145 519.6 353 76.5
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 2.0e-145 519.6 353 76.5
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 2.6e-145 519.2 360 75.3
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 3.3e-145 518.8 353 76.5
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 3.3e-145 518.8 317 82.6
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 4.4e-145 518.5 342 79.2
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 7.5e-145 517.7 320 80.6
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 1.7e-144 516.5 342 78.7
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 6.3e-144 514.6 384 70.3
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 6.3e-144 514.6 317 81.4
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 1.1e-143 513.8 340 77.4
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 1.8e-143 513.1 335 76.4
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 5.3e-143 511.5 335 77.0
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 7.0e-143 511.1 346 74.9
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 1.2e-142 510.4 335 76.7
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 2.7e-142 509.2 311 82.3
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 2.7e-142 509.2 402 67.2
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 1.0e-141 507.3 313 82.1
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 1.3e-141 506.9 311 81.4
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 1.9e-140 503.1 311 80.7
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 2.3e-138 496.1 316 79.4
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 8.3e-136 487.6 340 74.4
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 1.1e-135 487.3 305 82.0
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 3.1e-135 485.7 406 65.5
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 9.1e-135 484.2 340 71.8
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 2.7e-134 482.6 339 70.8
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 5.9e-134 481.5 302 80.8
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 1.3e-133 480.3 357 72.8
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 3.8e-133 478.8 361 72.3
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 1.1e-132 477.2 313 74.8
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 4.2e-132 475.3 370 71.1
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 1.2e-131 473.8 287 84.3
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 1.0e-130 470.7 353 72.0
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 5.2e-130 468.4 307 77.9
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 1.2e-129 467.2 304 79.3
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 4.1e-127 458.8 330 72.1
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 2.0e-126 456.4 428 59.6
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 5.9e-126 454.9 301 78.1
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 3.8e-125 452.2 287 78.7
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 2.5e-124 449.5 315 71.4
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 3.3e-124 449.1 308 75.3
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 8.9e-122 441.0 322 72.0
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 1.5e-116 423.7 329 69.0
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 1.3e-112 410.6 314 66.6
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 6.6e-109 398.3 334 63.2
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 6.6e-109 398.3 217 91.2
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 3.3e-108 396.0 325 62.2
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 5.6e-108 395.2 242 83.5
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 3.4e-105 386.0 255 75.7
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 2.6e-97 359.8 221 81.9
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 3.5e-86 322.8 305 56.4
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 6.9e-82 308.5 230 67.4
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 9.9e-81 304.7 308 54.9
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 1.6e-78 297.4 307 52.8
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 3.5e-78 296.2 192 77.6
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 1.0e-77 294.7 187 78.1
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 1.3e-72 277.7 220 65.0
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 8.4e-72 275.0 231 62.3
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 4.2e-71 272.7 167 82.6
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 1.3e-69 267.7 351 48.1
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 9.7e-60 235.0 151 78.1
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 1.0e-56 224.9 286 47.6
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 6.7e-53 212.2 160 68.8
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 9.1e-50 201.8 144 71.5
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 4.4e-44 183.0 242 48.3
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 1.7e-40 171.0 173 53.2
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 9.4e-39 165.2 123 65.0
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 2.7e-38 163.7 265 40.8
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 2.0e-36 157.5 110 68.2
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 6.3e-35 152.5 280 33.6
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 4.1e-34 149.8 263 37.6
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 3.5e-33 146.7 101 79.2
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 4.5e-33 146.4 140 60.7
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 1.7e-32 144.4 103 74.8
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 8.5e-32 142.1 81 91.4
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 3.4e-28 130.2 88 72.7
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 3.7e-19 100.1 108 53.7
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 4.8e-19 99.8 113 50.4
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 8.3e-19 99.0 70 72.9
Aa31LG11G8270 Aethionema arabicum HOM05D005313 ORTHO05D006317 9.1e-18 95.5 88 61.4
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 2.0e-17 94.4 54 77.8
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 5.9e-17 92.8 62 72.6
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.7e-16 91.3 56 82.1
BcaC06g31315 Brassica carinata HOM05D005313 ORTHO05D006317 2.8e-14 84.0 55 70.9
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.4e-10 71.6 43 76.7
AagrBONN_evm.TU.Sc2ySwM_117.3801 Anthoceros agrestis HOM05D005313 ORTHO05D006317 1.7e-08 64.7 87 42.5
DCAR_023607 Daucus carota HOM05D005313 ORTHO05D006317 1.5e-07 61.6 61 55.7


User provided reference genes

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