Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G022100 Phaseolus vulgaris HOM05D007681 ORTHO05D009734 1.3e-82 309.7 154 100.0
Glyma.07G166400 Glycine max HOM05D007681 ORTHO05D009734 1.3e-50 203.4 161 65.2
Ca_12590_v3 Cicer arietinum L. HOM05D007681 ORTHO05D009734 1.2e-37 160.2 174 52.3
Psat6g044480 Pisum sativum HOM05D007681 ORTHO05D009734 2.3e-36 156.0 181 50.8
Lj5g0022624 Lotus japonicus HOM05D007681 ORTHO05D009734 4.0e-36 155.2 173 49.1
Lj2g0022739 Lotus japonicus HOM05D007681 ORTHO05D009734 4.4e-35 151.8 172 48.3
TPR.G36897 Trifolium pratense HOM05D007681 ORTHO05D009734 6.4e-34 147.9 178 50.0
Lalb_Chr10g0095991 Lupinus albus HOM05D007681 ORTHO05D009734 1.0e-31 140.6 176 44.9
Medtr1g031740 Medicago truncatula HOM05D007681 ORTHO05D009734 1.3e-31 140.2 185 46.5
Phvul.005G062000 Phaseolus vulgaris HOM05D007681 ORTHO05D009734 1.3e-31 140.2 78 88.5
arahy.Tifrunner.gnm1.ann1.W0FD01 Arachis hypogaea HOM05D007681 ORTHO05D009734 2.5e-22 109.4 114 52.6
Cfa014982 Carpinus fangiana HOM05D007681 ORTHO05D009734 2.5e-22 109.4 127 42.5
Ciclev10016943m.g Citrus clementina HOM05D007681 ORTHO05D009734 2.5e-22 109.4 169 39.1
TWI77G0184 Tripterygium wilfordii HOM05D007681 ORTHO05D009734 3.3e-22 109.0 118 44.9
arahy.Tifrunner.gnm1.ann1.2VU2GF Arachis hypogaea HOM05D007681 ORTHO05D009734 4.3e-22 108.6 84 65.5
Cpa.g.sc2.238 Carica papaya HOM05D007681 ORTHO05D009734 7.3e-22 107.8 163 40.5
CsaV3_5G014700 Cucumis sativus L. HOM05D007681 ORTHO05D009734 7.3e-22 107.8 140 42.9
Thecc.02G287600 Theobroma cacao HOM05D007681 ORTHO05D009734 7.3e-22 107.8 116 46.6
Gohir.1Z015700 Gossypium hirsutum HOM05D007681 ORTHO05D009734 9.6e-22 107.5 112 49.1
Gohir.A01G150154 Gossypium hirsutum HOM05D007681 ORTHO05D009734 9.6e-22 107.5 112 49.1
Gorai.002G176600 Gossypium raimondii HOM05D007681 ORTHO05D009734 1.3e-21 107.1 112 48.2
Manes.15G131200 Manihot esculenta HOM05D007681 ORTHO05D009734 1.3e-21 107.1 141 43.3
Gohir.D01G143200 Gossypium hirsutum HOM05D007681 ORTHO05D009734 1.1e-20 104.0 112 47.3
Sed0010427 Sechium edule HOM05D007681 ORTHO05D009734 1.1e-20 104.0 155 39.4
Atru.chr11.647 Acer truncatum HOM05D007681 ORTHO05D009734 1.4e-20 103.6 125 46.4
Actinidia36647 Actinidia chinensis HOM05D007681 ORTHO05D009734 1.4e-20 103.6 137 38.7
BcaB07g30389 Brassica carinata HOM05D007681 ORTHO05D009734 2.4e-20 102.8 149 40.9
Eucgr.B02939 Eucalyptus grandis HOM05D007681 ORTHO05D009734 2.4e-20 102.8 122 40.2
Carub.0005s0053 Capsella rubella HOM05D007681 ORTHO05D009734 3.1e-20 102.4 112 49.1
C02p49750 Brassica napus HOM05D007681 ORTHO05D009734 2.0e-19 99.8 112 47.3
AT2G01590 Arabidopsis thaliana HOM05D007681 ORTHO05D009734 2.6e-19 99.4 112 46.4
BcaC03g17055 Brassica carinata HOM05D007681 ORTHO05D009734 3.4e-19 99.0 112 46.4
A02p32170 Brassica napus HOM05D007681 ORTHO05D009734 3.4e-19 99.0 149 40.9
CiPaw.06G048600 Carya illinoinensis HOM05D007681 ORTHO05D009734 3.4e-19 99.0 167 36.5
ECA233G2077 Erigeron canadensis HOM05D007681 ORTHO05D009734 3.4e-19 99.0 144 36.8
BolC2t11054H Brassica oleracea HOM05D007681 ORTHO05D009734 4.4e-19 98.6 149 40.3
CARHR144140 Cardamine hirsuta HOM05D007681 ORTHO05D009734 4.4e-19 98.6 112 46.4
ClCG07G005970 Citrullus lanatus HOM05D007681 ORTHO05D009734 5.8e-19 98.2 140 41.4
BraA02t08231Z Brassica rapa HOM05D007681 ORTHO05D009734 9.9e-19 97.4 151 40.4
AL5G10680 Arabidopsis lyrata HOM05D007681 ORTHO05D009734 1.3e-18 97.1 112 47.3
Nn3g18293 Nelumbo nucifera HOM05D007681 ORTHO05D009734 1.3e-18 97.1 112 44.6
PGR102G0336 Punica granatum HOM05D007681 ORTHO05D009734 1.3e-18 97.1 144 36.8
Sp2g13030 Schrenkiella parvula HOM05D007681 ORTHO05D009734 1.3e-18 97.1 147 41.5
EL10Ac1g01492 Beta vulgaris HOM05D007681 ORTHO05D009734 1.7e-18 96.7 117 40.2
Dinv28046 Davidia involucrata HOM05D007681 ORTHO05D009734 2.2e-18 96.3 114 43.9
Thhalv10005039m.g Eutrema salsugineum HOM05D007681 ORTHO05D009734 2.2e-18 96.3 112 45.5
Lsat_1_v5_gn_8_44280 Lactuca sativa HOM05D007681 ORTHO05D009734 2.2e-18 96.3 143 39.9
Hma1.2p1_0330F.1_g127440 Hydrangea macrophylla HOM05D007681 ORTHO05D009734 4.9e-18 95.1 113 43.4
Aa31LG2G8310 Aethionema arabicum HOM05D007681 ORTHO05D009734 8.4e-18 94.4 113 47.8
Sabra10G0080500 Salix brachista HOM05D007681 ORTHO05D009734 1.4e-17 93.6 148 38.5
TAR629G0584 Trochodendron aralioides HOM05D007681 ORTHO05D009734 1.9e-17 93.2 144 38.2
Potri.010G110100 Populus trichocarpa HOM05D007681 ORTHO05D009734 3.2e-17 92.4 108 43.5
AUR62013520 Chenopodium quinoa HOM05D007681 ORTHO05D009734 4.2e-17 92.0 153 34.0
GSVIVG01011705001 Vitis vinifera HOM05D007681 ORTHO05D009734 9.3e-17 90.9 106 46.2
Nitab4.5_0001343g0010 Nicotiana tabacum HOM05D007681 ORTHO05D009734 1.6e-16 90.1 122 41.0
Prupe.1G330200 Prunus persica HOM05D007681 ORTHO05D009734 1.6e-16 90.1 150 36.7
Migut.L00587 Erythranthe guttata HOM05D007681 ORTHO05D009734 4.6e-16 88.6 122 37.7
Aqoxy3G00048 Aquilegia oxysepala HOM05D007681 ORTHO05D009734 6.0e-16 88.2 146 37.7
HanXRQChr12g0363581 Helianthus annuus HOM05D007681 ORTHO05D009734 1.0e-15 87.4 148 38.5
AUR62026755 Chenopodium quinoa HOM05D007681 ORTHO05D009734 1.3e-15 87.0 166 32.5
MD13G1021700 Malus domestica HOM05D007681 ORTHO05D009734 1.3e-15 87.0 133 36.8
CANSAT01G2988 Cannabis sativa HOM05D007681 ORTHO05D009734 1.7e-15 86.7 123 40.7
Oeu063591.1 Olea europaea HOM05D007681 ORTHO05D009734 2.3e-15 86.3 140 35.7
PSO017G3157 Papaver somniferum HOM05D007681 ORTHO05D009734 3.0e-15 85.9 144 34.7
Nitab4.5_0012949g0010 Nicotiana tabacum HOM05D007681 ORTHO05D009734 8.7e-15 84.3 170 33.5
FAN17G1502 Fragaria x ananassa HOM05D007681 ORTHO05D009734 1.1e-14 84.0 113 39.8
FvH4_4g34062 Fragaria vesca HOM05D007681 ORTHO05D009734 1.5e-14 83.6 125 38.4
PSO478G3571 Papaver somniferum HOM05D007681 ORTHO05D009734 1.5e-14 83.6 145 34.5
PGSC0003DMG400015899 Solanum tuberosum HOM05D007681 ORTHO05D009734 1.5e-14 83.6 155 36.1
RcHm_v2.0_Chr4g0443571 Rosa chinensis HOM05D007681 ORTHO05D009734 1.9e-14 83.2 125 39.2
Rhsim09G0093700 Rhododendron simsii HOM05D007681 ORTHO05D009734 2.5e-14 82.8 120 38.3
Solyc05g026570.3 Solanum lycopersicum HOM05D007681 ORTHO05D009734 2.5e-14 82.8 155 35.5
Sopen05g023100 Solanum pennellii HOM05D007681 ORTHO05D009734 3.3e-14 82.4 113 41.6
Nitab4.5_0000018g0170 Nicotiana tabacum HOM05D007681 ORTHO05D009734 4.3e-14 82.0 120 40.0
FAN22G1679 Fragaria x ananassa HOM05D007681 ORTHO05D009734 9.6e-14 80.9 113 38.9
unitig_26.g8951 Utricularia gibba HOM05D007681 ORTHO05D009734 1.3e-13 80.5 118 39.8
COL.COLO4_13100 Corchorus olitorius HOM05D006947 ORTHO05D008818 2.1e-13 79.7 124 40.3
MSTRG.7616 Avicennia marina HOM05D007681 ORTHO05D009734 3.6e-13 79.0 166 30.7
Peaxi162Scf00376g00013 Petunia axillaris HOM05D007681 ORTHO05D009734 8.1e-13 77.8 68 54.4
Ah.01g006360 Amaranthus hybridus HOM05D007681 ORTHO05D009734 1.3e-10 70.5 148 29.7
MELO3C026423.2 Cucumis melo HOM05D007681 ORTHO05D009734 2.9e-10 69.3 98 40.8
Lj6A742G71 Lonicera japonica HOM05D007681 ORTHO05D009734 2.4e-09 66.2 87 42.5
THA.LOC104805073 Tarenaya hassleriana HOM05D007681 ORTHO05D009734 5.5e-09 65.1 144 36.1
Os09g0306650 Oryza sativa ssp. japonica HOM05D007681 ORTHO05D009734 6.0e-08 61.6 137 30.7
VMungo0130G0001 Vigna mungo HOM05D060897 ORTHO05D051612 1.8e-07 60.1 39 71.8
Phvul.004G068500 Phaseolus vulgaris HOM05D007681 ORTHO05D009734 2.3e-07 59.7 42 69.0
MBI16_g06252_MAGBIO Magnolia biondii HOM05D007681 ORTHO05D009734 5.1e-07 58.5 87 40.2


User provided reference genes

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