Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 1.5e-236 822.4 407 100.0
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 1.5e-210 736.1 405 89.9
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 3.2e-181 638.6 371 83.6
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 2.7e-164 582.4 405 68.6
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 1.3e-163 580.1 405 69.9
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 1.3e-163 580.1 405 67.9
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 3.0e-163 578.9 401 68.8
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 1.6e-153 546.6 377 68.4
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 2.6e-143 512.7 391 63.9
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 4.2e-141 505.4 405 62.5
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 1.3e-139 500.4 389 63.8
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 5.1e-139 498.4 381 64.3
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 2.8e-137 492.7 380 63.7
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 8.1e-137 491.1 377 64.2
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 3.1e-136 489.2 371 65.2
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 9.0e-136 487.6 382 62.0
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 2.8e-121 439.5 408 54.9
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 2.6e-119 433.0 409 52.1
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 1.7e-118 430.3 396 54.5
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 2.2e-118 429.9 399 54.6
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 4.2e-117 425.6 411 52.8
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 7.2e-117 424.9 399 53.4
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 1.4e-115 420.6 407 52.1
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 2.3e-115 419.9 410 51.7
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.5e-114 417.2 399 52.6
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 2.0e-114 416.8 399 52.4
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 7.4e-114 414.8 399 52.4
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 7.4e-114 414.8 412 50.2
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 4.8e-113 412.1 399 52.4
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 6.3e-113 411.8 412 50.7
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 3.1e-112 409.5 404 50.5
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 2.0e-111 406.8 409 52.1
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 4.5e-111 405.6 386 53.9
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 1.0e-110 404.4 403 49.4
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 1.3e-110 404.1 398 50.8
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 2.9e-110 402.9 400 50.5
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 2.9e-110 402.9 405 49.6
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 5.0e-110 402.1 402 50.7
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 1.4e-109 400.6 402 50.5
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 1.9e-109 400.2 399 50.4
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 1.9e-109 400.2 404 49.5
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 2.5e-109 399.8 407 51.4
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 5.5e-109 398.7 379 54.4
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.5e-109 398.7 380 51.3
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 4.7e-108 395.6 405 51.6
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.7e-108 395.6 381 51.2
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 5.1e-107 392.1 399 49.1
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 4.4e-106 389.0 384 50.8
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 5.7e-106 388.7 411 48.9
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 7.4e-106 388.3 396 49.2
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 2.8e-105 386.3 391 49.1
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 2.8e-105 386.3 381 50.4
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 3.7e-105 386.0 416 50.0
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 2.4e-104 383.3 382 49.2
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 5.3e-104 382.1 406 47.8
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 7.0e-104 381.7 404 47.5
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 3.5e-103 379.4 371 51.2
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 7.7e-103 378.3 402 46.5
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 1.3e-102 377.5 409 47.9
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 1.1e-101 374.4 375 48.8
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 1.4e-101 374.0 387 48.3
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 1.9e-101 373.6 378 47.6
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 4.2e-101 372.5 413 46.2
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 3.6e-100 369.4 375 48.8
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 2.3e-99 366.7 399 48.6
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 3.0e-99 366.3 413 45.5
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 3.9e-99 365.9 355 50.4
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 3.9e-99 365.9 376 49.2
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 6.7e-99 365.2 371 48.2
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 1.1e-98 364.4 402 46.5
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 3.3e-98 362.8 376 52.1
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 3.7e-97 359.4 352 52.3
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 1.1e-96 357.8 398 48.2
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 5.3e-96 355.5 401 46.1
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 4.5e-95 352.4 391 47.8
SGA_v2.0_scaffold20G09144 Striga asiatica HOM05D002238 ORTHO05D007272 4.5e-95 352.4 367 47.7
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 1.7e-94 350.5 402 45.3
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 2.9e-94 349.7 403 45.4
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 1.1e-93 347.8 383 47.5
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 7.2e-93 345.1 383 47.3
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 9.4e-93 344.7 387 48.1
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 1.2e-92 344.4 413 45.5
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 1.6e-92 344.0 408 45.3
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 2.1e-92 343.6 383 47.3
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 1.0e-91 341.3 383 46.5
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 1.4e-91 340.9 414 45.4
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 1.8e-91 340.5 386 46.1
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 4.0e-91 339.3 375 46.9
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 5.2e-91 339.0 388 46.9
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 8.8e-91 338.2 388 46.9
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 3.3e-90 336.3 386 46.6
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 2.8e-89 333.2 383 47.0
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 6.5e-86 322.0 375 44.3
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 3.2e-85 319.7 397 44.1
Glyma.09G122801 Glycine max HOM05D002238 ORTHO05D007272 4.2e-85 319.3 181 84.0
HanXRQChr13g0402681 Helianthus annuus HOM05D002238 ORTHO05D007272 8.8e-83 311.6 365 46.8
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 2.4e-80 303.5 364 45.6
Nitab4.5_0009119g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.1e-80 302.8 323 49.8
BraA06t26543Z Brassica rapa HOM05D002238 ORTHO05D007272 2.3e-78 297.0 287 54.4
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 2.9e-78 296.6 372 43.0
QL01p053808 Quercus lobata HOM05D002238 ORTHO05D007272 5.0e-78 295.8 255 56.1
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 5.5e-77 292.4 406 39.7
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 9.5e-77 291.6 404 40.6
Nitab4.5_0017994g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.0e-70 271.6 295 49.2
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 4.9e-65 252.7 363 39.4
ATR1156G046 Amborella trichopoda HOM05D002238 ORTHO05D007272 2.4e-64 250.4 263 49.0
Duzib187G0736 Durio zibethinus HOM05D002238 ORTHO05D007272 3.0e-62 243.4 208 56.7
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 1.6e-60 237.7 260 46.9
MD15G1119600 Malus domestica HOM05D002238 ORTHO05D007272 1.2e-58 231.5 280 46.4
ECA233G3411 Erigeron canadensis HOM05D002238 ORTHO05D007272 1.7e-57 227.6 206 52.9
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 1.2e-55 221.5 285 39.3
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 1.5e-53 214.5 270 43.3
Atru.chr7.2387 Acer truncatum HOM05D002238 ORTHO05D007272 7.3e-53 212.2 160 63.8
Zm00001eb090760 Zea mays HOM05D002238 ORTHO05D007272 6.2e-52 209.1 294 41.2
Os11g0207300 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D007272 2.2e-49 200.7 298 39.3
BcaNung07110 Brassica carinata HOM05D002238 ORTHO05D007272 8.3e-49 198.7 164 57.9
Nitab4.5_0004440g0040 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.6e-47 194.5 157 59.2
SEGI_41370 Sequoiadendron giganteum HOM05D002238 ORTHO05D007272 3.6e-44 183.3 342 32.5
Peaxi162Scf00108g00048 Petunia axillaris HOM05D002238 ORTHO05D007272 9.3e-40 168.7 194 49.5
Nitab4.5_0013543g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.5e-37 160.6 134 59.7
Nitab4.5_0011728g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.3e-37 160.2 323 32.5
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 6.2e-36 156.0 193 45.6
Atru.chr7.2264 Acer truncatum HOM05D002238 ORTHO05D007272 1.8e-35 154.5 191 40.8
SalBow7G3196 Salvia bowleyana HOM05D002238 ORTHO05D007272 1.8e-35 154.5 186 43.5
SalBow6G2105 Salvia bowleyana HOM05D002238 ORTHO05D007272 5.8e-34 149.4 189 42.9
Nitab4.5_0012587g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.7e-33 147.9 279 34.1
QL10p065406 Quercus lobata HOM05D002238 ORTHO05D007272 1.7e-33 147.9 260 35.0
BcaB07g29994 Brassica carinata HOM05D002238 ORTHO05D007272 2.5e-29 134.0 163 45.4
A06p36210 Brassica napus HOM05D002238 ORTHO05D007272 1.6e-28 131.3 162 48.8
Nitab4.5_0011591g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.1e-24 118.6 108 55.6
Nitab4.5_0002007g0110 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.4e-24 116.3 109 54.1
MD15G1118500 Malus domestica HOM05D002238 ORTHO05D007272 2.1e-23 114.4 112 51.8
Medtr3g118420 Medicago truncatula HOM05D002238 ORTHO05D026268 3.7e-20 103.6 86 55.8
Nitab4.5_0002007g0090 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.1e-19 100.5 97 52.6
Nitab4.5_0011728g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 9.0e-19 99.0 116 41.4
Nitab4.5_0012587g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.4e-18 97.1 116 40.5
Nitab4.5_0002007g0100 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.3e-14 84.3 87 48.3
Nitab4.5_0011591g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.4e-11 75.1 71 49.3
Atru.chr7.2385 Acer truncatum HOM05D002238 ORTHO05D026268 4.5e-10 70.1 93 39.8
Actinidia22361 Actinidia chinensis HOM05D002238 ORTHO05D055889 1.6e-07 61.6 52 53.8


User provided reference genes

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